Lsi03G009030 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G009030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGeneral transcription factor 3C-like protein
Locationchr03 : 16558051 .. 16561354 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACTGTTTACAGTTAAAATTTCAAAAAAAAAGGAAAAAAAAGAAAGAAAAGAAAGAAGACATGTAATGATTTGCACAAAGTAAGTCTTCCACCTTGAGATACGCTAAATCATTTCCATCTATTCAATTTCTTTTGAATTTCATCCATTACTGGCTGCCAAAAAGAAACTTTCTTTGGGTATCCACCAAGTGGAAGGCCAATGTACAAGAAAGGCTAAAATTCTACCTTACAACACAACCGACATGACATGGACAATAACTTATCTTCTTCCACATTAACCTCACATAATGCTGATCTCTCACAATTTACCTTTTGGCCAGAACACCACTCAAAGAACTCAAATAGTTCTAATGAGACTATTTAACATCTCGTCACTATATCTGCAAAATAAAAGTGCGTCATCAGCAAACTGAAGAATGGAGATGTGAACTTTGTCTTTTCCCACTACAAAACCTTCAGAAGCCCCATTTTCATTGATAACAGAAATAAGAGCACTCAATACCTCAATGACTAGAAGGAAAAGAAAAGGCGAGAGAGGTTCTCTGTGCCGAATTCCTCTAGAGCATGTATTCTACCATGAGGTTTCCTATTAATAAAAACTGAAAATCTTGGGTCTCGAATACAACCAAACCAGTTGACATCCACTTGGAGTCAAATCCTTTGAGAAGAAGCACTTTCTCAAGAAAATCTCAACCAACCCGATCAAAAGGTCTTTTCTAAATCAAGTTTGAGTAAAAGTCTTCTAATTTCATCATCAATTTTGTTAATTCTGTTTCTAAAAATTAATTGTTGATTTCATTTAGTAGCAATTTCACGCAACTCATGATGGCATGATGCAATTATTTTCTTATAATACACAGGATAGCAACCAAATGTGATAGGATTTTTTTTTTTTTTTAAAAAAAAACCAAATGCGATAGGATTATAAATATGGTACTGTTGATCTGGGATCTGATTTCATATTTTTGGCACATACAGTATGAATCTGGATGGTTTTCTCTGCGTATCCTAAATTGCATCCGACAACGAATCATGATGAGGTTTTTATCAGTATTCCCAACGGCAGGTGCTGAAGCTTTACTCAGAGCAGCCTCTGAAAGCTTTGAAAAATTGAAGAGGGAGGATAGAAAAGACTGCACAAAGGTCGACCAGGGAGGGGAACATGAAGCCAATGCAGGTTTAAATTAAAATTCAACAACTTCTATTTATTTGTGTGTTTCCGTATGTTTGCCTTTATTTTTTTCCTTCCGTTGGGGATAGGAACGTAGCATGATTGAAAGTAAAGTTTCCATGAAATCTGGCTTTACTGTATAGAACCACAGAGATAGCAGAAATCAGACTTATTAAGAGATAGAAGAAAATCCTCCACATCCCGAGGCGAGGAATGTAATGATAATCAGTTACTAATTTTCCATCCTAAATACTTTCATTATCGAGCCTTCTCTGTTACTAGAATAATAGTAAACTAATTTCCACTTGTTGATTCCATTAAACATTTTTCAAGATTCGGTTCTGAGCGTAACCAAAAGATTTTTGAGAATAAGCAGTGGTGTTGGTTGGAGTTCTTTGATATTTCCTAGACTATAGACTTCTTTCTAAATTGTTCATTCGTTATGCTTTTCATGATATTTATATTAATTGATTACTTCAATGTAAAGTTTCGTTTCTGGTTATTCTCTGATATTTCCAACCTTTCAGCTTTGGTTTATTCGTCGTAAAGATTCATTAAGGGTTCATTGGATAGTGAACAAAAGATGTTAGCTTAATAATAGCCTAATAGGTGAAGGGTATTTATTAATGCTGATTAAGTTTTGCAGCTGTGATCAATGATGACAAACTGGATGCTAATTACGCCGAAGAAGATGAAGAAGAAGATGGCCTAGGTGTTGAGAGTGGTGATGAGGCATTAGATGCATATGACGATTTCGATATGGTAATTATATAGTTTATCCGAAATATATTAAAATCTTGTTTGAATTGGCTTTCTAAAGATTAAAATCACTTTTTCAAGTCCTCTGAAAGTTAATCCAAACATGTTTCTGACTGCTTTTATTTATTTCCTTATTCTGTAGGTTGGTGACGATGACGAGATCTCTCTGCAGTCACATTCATGTAATTTACCCACCTCTTTTACAAGTCCTACCTTTTCTTTTTTTTTCCATGTCAAGTTTTGTTGTTAGATGCAAGGGTTGATAATAGCCAGTTTTGCTTTAGTTTTCAGAGGTTAAAAAGCATTTTTGGTCCATAGATTTTCATGAAAGTAACAATTTAGTCCCTGAATTTTTGTTTGTAGCAATTTAGTCCTTGTACTTTCAATTTTGTAACAATTTAATCCTTGAACTTTATTAAGTAATAATTAGTCTTTATACTTTCAAATTTGGAACAATTTAGTCTCTAAACTTTAGTATGTAACAATTTAGTCCCTAGTGTAAAAAAAAATTCATCAAAATTGCATATCAATTTTTATTATTTTATGTTGTAGACTTTGTATTTCATAAACATATTGAGTCTCTAACTAGTTTATCAGTTTATTGCAAGAAATCTTATAAATTTTAAAGTACAAGGACTAAATTGTTACACAGTAAAGTTTAGGGATTAAATTGTTATAAAATCTAAAGTACATGGATTAAATCGTTACATGCTAGAGTTTAAGGACTAAATTGTTAATTCTATGAAAGTTTAGGGAGTAAAAGTAATTTTTAATCTTTTTCTAAAATGATTGGTTTGTTTTCAAGTTTATGAATTTGATAAGTTTGTGAAGATGTTTACTTTTGAGGAAGAGAATTCGAAGCCTGCTCTTCCTTTGGGGATGGAGTTTAGAAGTAGCAGTGGATGGGGAAAATAAATCTAAATTATAATATATATATTTTCTTTATTTATTTAATTTTTTGAGTTGAGTTGTAGTAACGTGATGGAGTTTCAGATTTAAACATGGACGATGTTTCAAGAACACATTTGCAAGAATTGTTTGGTAGCTTTGAAGATGGAGAGAAGATGGACGATGGAGATGGCAGTGAGGATGAGTATCAAATATATGAGCAAGATACTGATATGGACTCTGACGATGATCAATCATAGCTTTTCTTTTCTTTTTTTCCTTTTTTCAGAATATTGTCAGTTAGTTTATGTTTACTTAATTTAATTGGAAAATTACTATAATTAAAAAAAATATCCAACTATTTGATAGATCTATTTTATGTTTTGAGATTTACTGAGTTGAGCAAAGATGTGTTTAGCACATAACTCAAATTTTGTTTCATCACTTGGATTCTAGTACAAATTTTGAAAACATTTTTATG

mRNA sequence

ATGCATACTTATGAATCTGGATGGTTTTCTCTGCGTATCCTAAATTGCATCCGACAACGAATCATGATGAGGTTTTTATCAGTATTCCCAACGGCAGGTGCTGAAGCTTTACTCAGAGCAGCCTCTGAAAGCTTTGAAAAATTGAAGAGGGAGGATAGAAAAGACTGCACAAAGGTCGACCAGGGAGGGGAACATGAAGCCAATGCAGCTGTGATCAATGATGACAAACTGGATGCTAATTACGCCGAAGAAGATGAAGAAGAAGATGGCCTAGGTGTTGAGAGTGATTTAAACATGGACGATGTTTCAAGAACACATTTGCAAGAATTGTTTGGTAGCTTTGAAGATGGAGAGAAGATGGACGATGGAGATGGCAGTGAGGATGAGTATCAAATATATGAGCAAGATACTGATATGGACTCTGACGATGATCAATCATAGCTTTTCTTTTCTTTTTTTCCTTTTTTCAGAATATTGTCAGTTAGTTTATGTTTACTTAATTTAATTGGAAAATTACTATAATTAAAAAAAATATCCAACTATTTGATAGATCTATTTTATGTTTTGAGATTTACTGAGTTGAGCAAAGATGTGTTTAGCACATAACTCAAATTTTGTTTCATCACTTGGATTCTAGTACAAATTTTGAAAACATTTTTATG

Coding sequence (CDS)

ATGCATACTTATGAATCTGGATGGTTTTCTCTGCGTATCCTAAATTGCATCCGACAACGAATCATGATGAGGTTTTTATCAGTATTCCCAACGGCAGGTGCTGAAGCTTTACTCAGAGCAGCCTCTGAAAGCTTTGAAAAATTGAAGAGGGAGGATAGAAAAGACTGCACAAAGGTCGACCAGGGAGGGGAACATGAAGCCAATGCAGCTGTGATCAATGATGACAAACTGGATGCTAATTACGCCGAAGAAGATGAAGAAGAAGATGGCCTAGGTGTTGAGAGTGATTTAAACATGGACGATGTTTCAAGAACACATTTGCAAGAATTGTTTGGTAGCTTTGAAGATGGAGAGAAGATGGACGATGGAGATGGCAGTGAGGATGAGTATCAAATATATGAGCAAGATACTGATATGGACTCTGACGATGATCAATCATAG

Protein sequence

MHTYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESDLNMDDVSRTHLQELFGSFEDGEKMDDGDGSEDEYQIYEQDTDMDSDDDQS
Homology
[Close]
BLAST of Lsi03G009030 vs. TrEMBL
Match: A0A0A0KV91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630700 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.8e-46
Identity = 120/173 (69.36%), Postives = 128/173 (73.99%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           +YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALL AASESFEKLKR DRKDC+KVDQ 
Sbjct: 402 SYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLTAASESFEKLKRGDRKDCSKVDQE 461

Query: 63  GEHEANAAVINDDKLDANYAEEDEEEDGLGVES---------DLNM---DDVSRTHL--- 122
            EHEANA   +DDKLDA+YAEED EEDG+GVES         D NM   DD    H    
Sbjct: 462 EEHEANAVANHDDKLDASYAEED-EEDGIGVESGNEALDAYDDFNMVGDDDEFSLHSHSY 521

Query: 123 -----------QELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD 145
                      QELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSD+D
Sbjct: 522 LGMEDVSRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYEQDTDMDSDED 573

[Close]
BLAST of Lsi03G009030 vs. TrEMBL
Match: V7CIJ9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G1131000g PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           T+ +GWFS  ++NCIRQR+M+RFLSVFP  GAE LLRAA+  FEKLKRE  +   KVD+ 
Sbjct: 185 TFGTGWFSQHMINCIRQRLMVRFLSVFPKPGAENLLRAATLKFEKLKRESYRHAMKVDEE 244

Query: 63  GEHEANAAVINDDKLD----------ANYAEEDEEED---------GLGVESDLNMDDVS 122
              +AN  +   ++LD           N +EE+ EE+          L  ES  N++++S
Sbjct: 245 ECQQANLGLEEHEELDNAEDEEEAAEGNDSEEEWEEELDLAGDIQIPLPSESYTNIENIS 304

Query: 123 RTHLQELFGSF--EDGEKMDDGDGSEDEYQIYEQDTDMDSDDD 145
           R HLQELFGSF   DG  +   +GS++EY IYE+D++ +  D+
Sbjct: 305 RIHLQELFGSFPPNDGANL-QANGSDEEYHIYEEDSEENYSDE 346

[Close]
BLAST of Lsi03G009030 vs. TrEMBL
Match: G7L2C6_MEDTR (General transcription factor 3C-like protein OS=Medicago truncatula GN=MTR_7g059160 PE=4 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           T+ESGWFSL  +NC+RQR+M+R+LS+FP  GAE+LLR A+  FEKLKRE  ++  K+   
Sbjct: 401 TFESGWFSLNKINCLRQRLMVRYLSIFPKPGAESLLRVAASKFEKLKRECNREAVKLCVE 460

Query: 63  GEHEANAAV--------INDD---KLDANYAEEDEEEDGLGVESDLNM-------DDVSR 122
              +AN  +        + DD     +AN ++E+ EE+ L +  D  M        ++S 
Sbjct: 461 ERQQANTGLEESEEPENVEDDDGEAAEANNSDEESEEE-LDLTGDTEMPLPSPSHPNISM 520

Query: 123 THLQELFGSFE----DGEKMDDGDGSEDEYQIYEQDTDMDSDD 144
           THLQELFGSF     DG+K  + +GSE+EY IYE+D+D  S++
Sbjct: 521 THLQELFGSFPSDEIDGDKAQE-NGSEEEYHIYEEDSDNYSEE 561

[Close]
BLAST of Lsi03G009030 vs. TrEMBL
Match: G7L2C5_MEDTR (General transcription factor 3C-like protein OS=Medicago truncatula GN=MTR_7g059160 PE=4 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           T+ESGWFSL  +NC+RQR+M+R+LS+FP  GAE+LLR A+  FEKLKRE  ++  K+   
Sbjct: 424 TFESGWFSLNKINCLRQRLMVRYLSIFPKPGAESLLRVAASKFEKLKRECNREAVKLCVE 483

Query: 63  GEHEANAAV--------INDD---KLDANYAEEDEEEDGLGVESDLNM-------DDVSR 122
              +AN  +        + DD     +AN ++E+ EE+ L +  D  M        ++S 
Sbjct: 484 ERQQANTGLEESEEPENVEDDDGEAAEANNSDEESEEE-LDLTGDTEMPLPSPSHPNISM 543

Query: 123 THLQELFGSFE----DGEKMDDGDGSEDEYQIYEQDTDMDSDD 144
           THLQELFGSF     DG+K  + +GSE+EY IYE+D+D  S++
Sbjct: 544 THLQELFGSFPSDEIDGDKAQE-NGSEEEYHIYEEDSDNYSEE 584

[Close]
BLAST of Lsi03G009030 vs. TrEMBL
Match: A0A0L9URP4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g056800 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.7e-18
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           TY +GWFS  ++NCIRQR+M+RFLSVFP  G E+L +AA   FEKL+RE  +   K+D+ 
Sbjct: 397 TYATGWFSQHMINCIRQRLMVRFLSVFPKPGGESLHKAAISKFEKLRRESYRHAMKLDEE 456

Query: 63  GEHEANAAVINDDKLDANYAEEDEEEDG--------------------LGVESDLNMDDV 122
              + N  +   ++LD    EE+E  +G                    L  +S  N+++ 
Sbjct: 457 ECQQPNLGLEEHEELDNAEDEEEEAAEGNDSEEEWEEELDLAGDIQIPLQSQSYTNIENF 516

Query: 123 SRTHLQELFGSFEDGEKMDDG-----DGSEDEYQIYEQDTDMDSDDD 145
           SRTHLQELFGSF   E   DG     +GS++EY IYE+D++ +S  +
Sbjct: 517 SRTHLQELFGSFPHNEV--DGANLQTNGSDEEYHIYEEDSEENSSGE 561

[Close]
BLAST of Lsi03G009030 vs. TAIR10
Match: AT5G24450.1 (AT5G24450.1 Transcription factor IIIC, subunit 5)

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 54/169 (31.95%), Postives = 88/169 (52.07%), Query Frame = 1 

Query: 4   YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKR------------- 63
           Y++GWFS  +L+ +R R+ +RF+SVFP  G E + ++  E FE+ ++             
Sbjct: 386 YKTGWFSEALLDNLRLRVAVRFVSVFPEPGFEDVFKSIQEEFERSEKTRIQKDALQPSQR 445

Query: 64  ------EDRKDCTKVDQGGEHEANAAVINDDKLDANYAEEDEEEDGLGVESD--LNMDDV 123
                 +D K C   ++  + + NA   ++D LD  Y EE   +D + + S    +M++ 
Sbjct: 446 NHQETTKDMKKCKNTNKEKDDDVNADEDSED-LDDEY-EEAANDDDISISSHGYGDMENN 505

Query: 124 SRTHLQELFGSFED------GEKMDDGDGSEDEYQIYEQDTDMDSDDDQ 146
           SRT+LQ LF  F        G   DD D S+ EY IYEQ+++   DD++
Sbjct: 506 SRTYLQGLFNRFPSSASALYGSANDDND-SDGEYPIYEQESNALDDDEE 551

[Close]
BLAST of Lsi03G009030 vs. TAIR10
Match: AT3G49410.1 (AT3G49410.1 Transcription factor IIIC, subunit 5)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 56/182 (30.77%), Postives = 91/182 (50.00%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKRED---------- 62
           +++SGWFS  +L+ +R R+ +RF+SVFP  G E + ++  E FE+ ++            
Sbjct: 383 SHKSGWFSEAMLDTLRLRVAVRFVSVFPETGFEDVFKSIQEEFERSEKVQIQKETLKPSL 442

Query: 63  --RKDCTKVDQGGE-----HEANAAVINDDKLDANYAEEDEEED--------------GL 122
              ++ TK  +  E     +E   A +N+D  D N  +EDE+E+               L
Sbjct: 443 VKHREATKGSEDMETFKSVNENVDANVNEDGEDENLDDEDEDEEEEEELDMAAGDNEISL 502

Query: 123 GVESDLNMDDVSRTHLQELFGSFEDGEKMDDG-----DGSEDEYQIYEQDTD--MDSDDD 147
                L+ ++ SRT+LQ LF SF   E    G     DGS+ E+QIYE++++     DDD
Sbjct: 503 DSHGYLDTENSSRTYLQGLFDSFPSSEPNLYGDFAVDDGSDGEFQIYEEESEGLYSIDDD 562

[Close]
BLAST of Lsi03G009030 vs. NCBI nr
Match: gi|778707017|ref|XP_011655959.1| (PREDICTED: general transcription factor 3C polypeptide 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46
Identity = 123/174 (70.69%), Postives = 130/174 (74.71%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           +YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALL AASESFEKLKR DRKDC+KVDQ 
Sbjct: 383 SYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLTAASESFEKLKRGDRKDCSKVDQE 442

Query: 63  GEHEANAAVIN-DDKLDANYAEEDEEEDGLGVES---------DLNM---DDVSRTHL-- 122
            EHEANAAV N DDKLDA+YAEED EEDG+GVES         D NM   DD    H   
Sbjct: 443 EEHEANAAVANHDDKLDASYAEED-EEDGIGVESGNEALDAYDDFNMVGDDDEFSLHSHS 502

Query: 123 ------------QELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD 145
                       QELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSD+D
Sbjct: 503 YLGMEDVSRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYEQDTDMDSDED 555

[Close]
BLAST of Lsi03G009030 vs. NCBI nr
Match: gi|449449447|ref|XP_004142476.1| (PREDICTED: general transcription factor 3C polypeptide 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 8.3e-46
Identity = 120/173 (69.36%), Postives = 128/173 (73.99%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           +YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALL AASESFEKLKR DRKDC+KVDQ 
Sbjct: 383 SYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLTAASESFEKLKRGDRKDCSKVDQE 442

Query: 63  GEHEANAAVINDDKLDANYAEEDEEEDGLGVES---------DLNM---DDVSRTHL--- 122
            EHEANA   +DDKLDA+YAEED EEDG+GVES         D NM   DD    H    
Sbjct: 443 EEHEANAVANHDDKLDASYAEED-EEDGIGVESGNEALDAYDDFNMVGDDDEFSLHSHSY 502

Query: 123 -----------QELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD 145
                      QELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSD+D
Sbjct: 503 LGMEDVSRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYEQDTDMDSDED 554

[Close]
BLAST of Lsi03G009030 vs. NCBI nr
Match: gi|700197190|gb|KGN52367.1| (hypothetical protein Csa_5G630700 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 8.3e-46
Identity = 120/173 (69.36%), Postives = 128/173 (73.99%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           +YESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALL AASESFEKLKR DRKDC+KVDQ 
Sbjct: 402 SYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLTAASESFEKLKRGDRKDCSKVDQE 461

Query: 63  GEHEANAAVINDDKLDANYAEEDEEEDGLGVES---------DLNM---DDVSRTHL--- 122
            EHEANA   +DDKLDA+YAEED EEDG+GVES         D NM   DD    H    
Sbjct: 462 EEHEANAVANHDDKLDASYAEED-EEDGIGVESGNEALDAYDDFNMVGDDDEFSLHSHSY 521

Query: 123 -----------QELFGSF----EDGEK-MDDGDGSEDEYQIYEQDTDMDSDDD 145
                      QELFGSF    EDGEK MDDGDGS++EYQIYEQDTDMDSD+D
Sbjct: 522 LGMEDVSRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYEQDTDMDSDED 573

[Close]
BLAST of Lsi03G009030 vs. NCBI nr
Match: gi|659130220|ref|XP_008465056.1| (PREDICTED: general transcription factor 3C polypeptide 5-like isoform X1 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 5.6e-42
Identity = 115/177 (64.97%), Postives = 126/177 (71.19%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           +YESGWFS+R LNCIRQRIMMRFLSVFPTAGAEALL AASE+FEKLKREDRKDC+KVDQ 
Sbjct: 384 SYESGWFSMRTLNCIRQRIMMRFLSVFPTAGAEALLTAASENFEKLKREDRKDCSKVDQE 443

Query: 63  GEHEANAAVINDDKL-DANYAEED---EEEDGLGVES---------DLNM--DDVSRTHL 122
            EHEANA VI+DDKL DA+YAEED   +EEDGLGVES         D NM  DD   +  
Sbjct: 444 EEHEANAVVIHDDKLDDASYAEEDAEEDEEDGLGVESGNEALDAYDDFNMVGDDDEFSLQ 503

Query: 123 QELFGSFE-------------------DGEK-MDDGDGSEDEYQIYEQDTDMDSDDD 145
              + S E                   DGEK MDDGDGS++EYQIYEQDTDMDSDDD
Sbjct: 504 SHSYLSMEDISRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYEQDTDMDSDDD 560

[Close]
BLAST of Lsi03G009030 vs. NCBI nr
Match: gi|659130224|ref|XP_008465058.1| (PREDICTED: general transcription factor 3C polypeptide 5-like isoform X2 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 5.6e-42
Identity = 115/177 (64.97%), Postives = 126/177 (71.19%), Query Frame = 1 

Query: 3   TYESGWFSLRILNCIRQRIMMRFLSVFPTAGAEALLRAASESFEKLKREDRKDCTKVDQG 62
           +YESGWFS+R LNCIRQRIMMRFLSVFPTAGAEALL AASE+FEKLKREDRKDC+KVDQ 
Sbjct: 377 SYESGWFSMRTLNCIRQRIMMRFLSVFPTAGAEALLTAASENFEKLKREDRKDCSKVDQE 436

Query: 63  GEHEANAAVINDDKL-DANYAEED---EEEDGLGVES---------DLNM--DDVSRTHL 122
            EHEANA VI+DDKL DA+YAEED   +EEDGLGVES         D NM  DD   +  
Sbjct: 437 EEHEANAVVIHDDKLDDASYAEEDAEEDEEDGLGVESGNEALDAYDDFNMVGDDDEFSLQ 496

Query: 123 QELFGSFE-------------------DGEK-MDDGDGSEDEYQIYEQDTDMDSDDD 145
              + S E                   DGEK MDDGDGS++EYQIYEQDTDMDSDDD
Sbjct: 497 SHSYLSMEDISRTHLQELFGSFPSLDEDGEKMMDDGDGSDEEYQIYEQDTDMDSDDD 553

The following BLAST results are available for this feature:
BLAST of Lsi03G009030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G009030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV91_CUCSA5.8e-4669.36Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630700 PE=4 SV=1[more]
V7CIJ9_PHAVU1.9e-2044.17Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G1131000g PE=4 SV=1[more]
G7L2C6_MEDTR2.5e-2043.56General transcription factor 3C-like protein OS=Medicago truncatula GN=MTR_7g059... [more]
G7L2C5_MEDTR2.5e-2043.56General transcription factor 3C-like protein OS=Medicago truncatula GN=MTR_7g059... [more]
A0A0L9URP4_PHAAN6.7e-1840.12Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g056800 PE=4 SV=1[more]
BLAST of Lsi03G009030 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24450.16.0e-1031.95 Transcription factor IIIC, subunit 5[more]
AT3G49410.11.3e-0930.77 Transcription factor IIIC, subunit 5[more]
BLAST of Lsi03G009030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778707017|ref|XP_011655959.1|3.7e-4670.69PREDICTED: general transcription factor 3C polypeptide 5 isoform X1 [Cucumis sat... [more]
gi|449449447|ref|XP_004142476.1|8.3e-4669.36PREDICTED: general transcription factor 3C polypeptide 5 isoform X2 [Cucumis sat... [more]
gi|700197190|gb|KGN52367.1|8.3e-4669.36hypothetical protein Csa_5G630700 [Cucumis sativus][more]
gi|659130220|ref|XP_008465056.1|5.6e-4264.97PREDICTED: general transcription factor 3C polypeptide 5-like isoform X1 [Cucumi... [more]
gi|659130224|ref|XP_008465058.1|5.6e-4264.97PREDICTED: general transcription factor 3C polypeptide 5-like isoform X2 [Cucumi... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G009030.1Lsi03G009030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G009030Cla97C09G176900Watermelon (97103) v2lsiwmbB246
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G009030Cucurbita maxima (Rimu)cmalsiB482
Lsi03G009030Cucurbita moschata (Rifu)cmolsiB466
Lsi03G009030Cucurbita pepo (Zucchini)cpelsiB168
Lsi03G009030Cucurbita pepo (Zucchini)cpelsiB206
Lsi03G009030Watermelon (Charleston Gray)lsiwcgB211
Lsi03G009030Wax gourdlsiwgoB320