Lsi03G008400 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G008400
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUDP-glucosyl transferase 74D1
Locationchr03 : 13245966 .. 13248323 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAAGGGCACATAAACCCTATCCTTCAATTTTCCAAACGTTTGGCTTCCAAAGGGCTGAAGGTCACACTTCTCAACGTCCTCCATGAAAACAATCAATCTTACCAGCTCGATGTTAGTGGTGGTGGTAACGGTAACGGTAATAGTAACGATTATTAGAACTCCATTATTAACGTGGAAGAGAGGGCTCGAGTGCTCTACAATGGCAGAGAAGCGGAGTCGATAGAGTCGCACATACATCGTCTGCAATCCTCAACTTGTTTCCATTTAACAAAGCTAATCACAGAACAACAAATTTCAAAATCTCCATTTGCATGCGTTGTGTACGATGACAAAAGGAGGAGACCTTTGAAAAGAGAAAGAACAAAGTAAAAAGTAAATTGCTTTTACTTCTACAATTTCTTTCACAACTTACTTTTGGCAAGTGTTACAATATCACTAGATATAGTCTCACAAGGTGTCTCTCTAAATTCCTTTAATAAAAGCAAAATTAAAGAGATTACAATAATTAAGATAGAATTTAGAAAGTTGCAGTAATTCTTGACCTTTCATTACTTAAACTGCCATAACTTTTTCTAAAAACCTCCAAACATCCTGAAACTTGAACCATTAGAAAGTACACATTCGGGGCATCAAAATCCATAGGTCATACATTTAATTTGGATATCGTTTGACCTTTCAAATACCTGCTAAAAAACTCCTAAAGAACTGATTATCTTGAGTTTAATGCTCAACAAAATCCCTTAAACTCAAATCTTTCGAGTCCTTCATCCTGATCATCTTCTTCAAATTTTCAAATAGAGTTATTGGTAGAGGTTTTGTGAAAATGTCAGCTACTTGATCATGACTTGAGACATGAATCATTTTCACTTCTCCATTTTTTACATGTTCTCTAATGAAATGAAACCGAGCATCAATATGCTTACTTCTTTCATGATGGACAGGATTCTTTGCTAACTGAATGGCTGATTTATTGTCGACTCGTATTTCAGTTGCCTCATGTTGTTCTAGTATTAACTCATGCAGTAAATTTCTTAGCCAAATTGTGTGACACACACACCAAGATGCTGCTACATATTTTGCTTCACATGTTGACAAAGTTACGATTGGTTGTTTTTTCGAGAGCCATGTGAATGTTGTATTTCCCATGTAGAACACATATCCTCCTGTGCTTTTCCTATCATCTATATCGCCGCACCAATCACTGTCAGAGTATCCTATCAACTTGTATTCACTTGACTTTGTATAGAGAAGCCCGAGTGATTCTGTTCCTCAAATGTATCGAAGAATTCTTTTAATGGATTTGAGATGCGAGTGTCTTGGATCCTCCATGTATCGGCTCACTACACCGACACAATATGCAATATTCGGTCTTGTGCATGTGAGATATCTCAGACTCCCTATCAAACTTCGGTATTCATGTGCATTTACTTGATCTCCTCCCTTAAATCTAGAGAGTTATGTGCCAAGCTCCATAGGTGTTGCTACAGGCTTGCATTCTCCGATCTTATTTTTCTTCAGAATGTCTCTGGCATGTGCTTCCTGTGAAACAAAAATTCCAAAATTTCCTCGTCTAATTTCAAGACCAATAAAATATTTCATCAATCCCAAGTTTGCCATTTCAAACTCTCGCATCATAGCATCTTTAAATTCCAGAACTAAGTTCTCATTGCTCCCCATGAAAATAAGATCATCAACATAAAGGGCAACGATAAGCAGATTACCTTCTTCCTTTTTTACGTATAATGCATGCTCATAAGGGCACCGAATGAACTTGTTCTTCTTGAAGTAAGTGTCAATGCGAGTGTTCCATGCTCGAGGTGCTTGCTTTAACCCATAGAGCGCCTTCTTTAGTTTCAACACCTTACTTTCCTTTCCAGGTTTCATGTATCCAGGAGGTTGCTCCACATAGACTTCTTCTTCAAGAACTCCATTTAAAAATGCTGATTTCGCATCCATTTGATAAATAGCCCATTCGAATTGCGCAGCTAGAGATAGGAGAAGTCTAATTGTTTCCATTCTTGTAATTGGAGCAAAAACTTCGTCATAATCGATTCCTGCCTTTTGTATGTAACCTTTTGCAACTAGACGCGCCTTGTACCTTTCAATCTCACCTTGGGCATTCATTTTTTTCTTGTATACCCATTTTAACACCAATGGGTCTACATCTATCGGGTAGTTCCACCAAATCCCAAGTTTTGTTTCTTTCGATTGCTTCTATTTCTTCATCCATTGCGGCTTTCCACTTTTTATCTCTTATGGCTTCCTCAGAAGTAATGTTCTCCGAGTCTGCTAATAAGCAAACTAGGTGCACTTCATCGGTTGAGTTGTATAGATCTTGTAGACTCCGCATCGTAG

mRNA sequence

CAACAAGGGCACATAAACCCTATCCTTCAATTTTCCAAACGTTTGGCTTCCAAAGGGCTGAAGGTCACACTTCTCAACGTCCTCCATGAAAACAATCAATCTTACCAGCTCGATGTTAGTGGTGGTGGTAACGGTAACGACTCCGCATCGTAG

Coding sequence (CDS)

CAACAAGGGCACATAAACCCTATCCTTCAATTTTCCAAACGTTTGGCTTCCAAAGGGCTGAAGGTCACACTTCTCAACGTCCTCCATGAAAACAATCAATCTTACCAGCTCGATGTTAGTGGTGGTGGTAACGGTAACGACTCCGCATCGTAG

Protein sequence

QQGHINPILQFSKRLASKGLKVTLLNVLHENNQSYQLDVSGGGNGNDSAS
Homology
[Close]
BLAST of Lsi03G008400 vs. TrEMBL
Match: A0A0A0K2F3_CUCSA (Glycosyltransferase OS=Cucumis sativus GN=Csa_7G051380 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-07
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 1  QQGHINPILQFSKRLASKGLKVTLLNVLHE-NNQSYQL 38
          +QGHINPILQFSKRLA KGLKVTLLN+LHE N  +YQL
Sbjct: 20 EQGHINPILQFSKRLAFKGLKVTLLNLLHEKNTTTYQL 57

[Close]
BLAST of Lsi03G008400 vs. NCBI nr
Match: gi|659110525|ref|XP_008455270.1| (PREDICTED: UDP-glycosyltransferase 74E2-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-07
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 1  QQGHINPILQFSKRLASKGLKVTLLNVLHENNQSYQLDVSGGGNGN 47
          +QGHINPILQFSKRLA KGLKVTLLN+LHENN     D S   + N
Sbjct: 21 EQGHINPILQFSKRLAFKGLKVTLLNLLHENNTLTTYDPSRCSSSN 66

[Close]
BLAST of Lsi03G008400 vs. NCBI nr
Match: gi|449438520|ref|XP_004137036.1| (PREDICTED: UDP-glycosyltransferase 74E2-like [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-07
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 

Query: 1  QQGHINPILQFSKRLASKGLKVTLLNVLHE-NNQSYQL 38
          +QGHINPILQFSKRLA KGLKVTLLN+LHE N  +YQL
Sbjct: 20 EQGHINPILQFSKRLAFKGLKVTLLNLLHEKNTTTYQL 57

The following BLAST results are available for this feature:
BLAST of Lsi03G008400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G008400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2F3_CUCSA3.1e-0781.58Glycosyltransferase OS=Cucumis sativus GN=Csa_7G051380 PE=3 SV=1[more]
BLAST of Lsi03G008400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G008400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110525|ref|XP_008455270.1|4.4e-0769.57PREDICTED: UDP-glycosyltransferase 74E2-like [Cucumis melo][more]
gi|449438520|ref|XP_004137036.1|4.4e-0781.58PREDICTED: UDP-glycosyltransferase 74E2-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009813 flavonoid biosynthetic process
biological_process GO:0052696 flavonoid glucuronidation
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0080043 quercetin 3-O-glucosyltransferase activity
molecular_function GO:0080044 quercetin 7-O-glucosyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G008400.1Lsi03G008400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownSSF53756UDP-Glycosyltransferase/glycogen phosphorylasecoord: 2..37
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G008400Wax gourdlsiwgoB320
Lsi03G008400Cucumber (Gy14) v1cgylsiB310
Lsi03G008400Cucurbita maxima (Rimu)cmalsiB117
Lsi03G008400Cucurbita maxima (Rimu)cmalsiB482
Lsi03G008400Cucurbita moschata (Rifu)cmolsiB104
Lsi03G008400Cucurbita moschata (Rifu)cmolsiB466
Lsi03G008400Cucurbita pepo (Zucchini)cpelsiB206
Lsi03G008400Cucurbita pepo (Zucchini)cpelsiB544
Lsi03G008400Cucumber (Chinese Long) v2culsiB446
Lsi03G008400Watermelon (Charleston Gray)lsiwcgB211
Lsi03G008400Watermelon (97103) v1lsiwmB228
Lsi03G008400Cucumber (Gy14) v2cgyblsiB411
Lsi03G008400Melon (DHL92) v3.6.1lsimedB278
Lsi03G008400Silver-seed gourdcarlsiB590
Lsi03G008400Silver-seed gourdcarlsiB674
Lsi03G008400Watermelon (97103) v2lsiwmbB250
Lsi03G008400Watermelon (97103) v2lsiwmbB246