Lsi03G008130 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G008130
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	B-box zinc finger family protein
Location	chr03 : 12276586 .. 12278919 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTATAAGCGTACACCCGGCCCTCTTGGTTAGAGTTAAGTTTGCAGAAGAATGAAGATTCAGTGCGACGTGTGCAGCAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGATGCAGCCCTCTGCTCCGCCTGCGACCACCGCCTCCACCACCCCAATCTCCTCGCCACTAACCACAATCGTTTTCCCCTCCTCCACTCCAACAACAACAGCAACAACCATTTTCCCGTTTGCGATATCTGTCAGGTAAGAATTTTCAGATCTTTCCTAATCTTTTCACCTTACCTTTCTTCAATACTGTTTTGTGTTCTCCAGATCCTGGCGATTTGAAAATTTATGTTGCAGGAAAGACGAGCGTTCTTGTTCTGCCAGCAAGACAGGGCGATTCTGTGCAAAGATTGCGATCTTCCAATACATTCGGCGAATCAACTTACTCGGAATCACCAACGTTTTCTTCTTACTGGTGTTAAGCTTTCTTGTGTTTCTGCATCTCAACCTAATTTTAATTCGCATCCTCTGCCGACGAATGATTCTTGTGTTGCTGAGAGTTCGACTTCTACTGCCCCGACTGCGACTGCTGACGCCATGAATGGTGTGGCAGAGTATTTGATTGAGACGCTTCCTGAATGGCATTTTGAAGAATTTCTTGATTCTTCCTCTACTACTGCTCCTCCTCCTTTTGGTTTCTCTAAGGTCTGCAACCCTGCATTTACATAACCATACTTTTTTTGGGTGGTCCCCACTTTTAGTGCAATACTTAAGTACAAAAAGGATATATTTTTTAATTATTTAAAAAATTAATCCGAATCAATTTTTAATTGGGTGCCGGAGGGGCTGCACAATACATAGATGCAACATGTTGCATCTAAGTTTTTTCCCATTTTTAATGGTTCAATTTTAGTTTAGGATGTTAATTATTACCAAAATTGGTTAAATAATAATAATAATAATTTTTATGTAAATAAATATAATGTAGGAATATGTTTTCAAAATTTATAATAAAAATATTAATAGATGAAAACAAAATTTTAAAAATTAACAAAAAAAGGAAAAAAAAAACTAAAATTGGAGACTGAATTTGAAATTTCTTGAAATGATGAGGAATAAAATTGGACAATTGAAAGTATAAATACTAAAATTGAAAAAATTTCAAAATATACAGACCAAAATGATATTTTAACCTAATTTGTATTTTATTTCATCTTAGTCATGTACTTTCAAATGTCTACTTTTAATTATTGTATTTTCAATAATTTTTAAAGTGTTAGTTTTCAATTTTAGTCTATAAAATTTTAGTCCATAAATTAAAATGTCCAATTTTTCAGTCTATGTATTTTTGAAAAATCTTAAATTCACTCGAAGTTATATTTTATCAAAATTGGTTAAATAATAATTATAATTTAATCGAGTAAAATAACATATATGTTAATATGTTTTCAAAATTTATAATAAAAATGTTAATAGATAATCTTTTTTTTTTTTTGAAAAAACCGACAATAAACTAATAGGAATGACTAAACTTAAAATTTATTAGAAGTATAAGAACTAAAATTAGACATTTCAAAGTACATGAACTAAATTTGAATAAGTCTAAAAAATATCATTTTAATCTTCTTAAAATTAGGCCTGAAGTTAAGTTTGTAGTTATTTTTTTTTCAAAAAGTAAAATTCTTTGTAAATTTTTAAAATTATTATTATTATTTAACCAGTTTTAATTTAAAAAATTTAATTTATTAAGATCTGGTTTAGTAACCATTTGATCTTTTATTTTTAGTTTTTAAAAATTAAGTCTATAAATACTCATTTCACCCTTAAGTTTCTTTCTTTTTTATCTATCTCTTACCAATTTTTTAAAAAATCAAATCAAAATTTTAAAACTAAAAAATAATTTTTAAAAAACTTGCTTTTAGTTTTGAAATTTGGCTAAGAAATAAACTTAAGGGTGAATTATGAAAGTAGAGAGGAAAATTATATTGTAAAGTTGTTTTTTTGAATAGTGGGAGTGGGAGGGTGTGGAGTGGAGATGGATGTAAAATCAATTTTGATGTTATTTGTATAAATAAACTCAGCTGCAGAGCAATGATGGTGATTGGGTTTTTCCATTTGTTGATGCTGTAGTGGAATTAGAAACCAACCCTACAGATTCTCTCTCACTGCAACACATTCAGATGGAGCTGAAGAAGGAATGTGGCGGTGGTGGAAGCGGCAGCGGCAGCGGTGGAGATTCATCTTTGGTCAGTAACATTCAGATGTTCTTGATTTTAACTATCTGAAATCTCTTGCATTTCCTATTTACATTTTGGATTAGAAAGAAGTTCGCTCTTTTTTTGGCC

mRNA sequence

CGTCTATAAGCGTACACCCGGCCCTCTTGGTTAGAGTTAAGTTTGCAGAAGAATGAAGATTCAGTGCGACGTGTGCAGCAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGATGCAGCCCTCTGCTCCGCCTGCGACCACCGCCTCCACCACCCCAATCTCCTCGCCACTAACCACAATCGTTTTCCCCTCCTCCACTCCAACAACAACAGCAACAACCATTTTCCCGTTTGCGATATCTGTCAGGAAAGACGAGCGTTCTTGTTCTGCCAGCAAGACAGGGCGATTCTGTGCAAAGATTGCGATCTTCCAATACATTCGGCGAATCAACTTACTCGGAATCACCAACGTTTTCTTCTTACTGGTGTTAAGCTTTCTTGTGTTTCTGCATCTCAACCTAATTTTAATTCGCATCCTCTGCCGACGAATGATTCTTGTGTTGCTGAGAGTTCGACTTCTACTGCCCCGACTGCGACTGCTGACGCCATGAATGGTGTGGCAGAGTATTTGATTGAGACGCTTCCTGAATGGCATTTTGAAGAATTTCTTGATTCTTCCTCTACTACTGCTCCTCCTCCTTTTGGTTTCTCTAAGCTGCAGAGCAATGATGGTGATTGGGTTTTTCCATTTGTTGATGCTGTAGTGGAATTAGAAACCAACCCTACAGATTCTCTCTCACTGCAACACATTCAGATGGAGCTGAAGAAGGAATGTGGCGGTGGTGGAAGCGGCAGCGGCAGCGGTGGAGATTCATCTTTGGTCAGTAACATTCAGATGTTCTTGATTTTAACTATCTGAAATCTCTTGCATTTCCTATTTACATTTTGGATTAGAAAGAAGTTCGCTCTTTTTTTGGCC

Coding sequence (CDS)

ATGAAGATTCAGTGCGACGTGTGCAGCAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGATGCAGCCCTCTGCTCCGCCTGCGACCACCGCCTCCACCACCCCAATCTCCTCGCCACTAACCACAATCGTTTTCCCCTCCTCCACTCCAACAACAACAGCAACAACCATTTTCCCGTTTGCGATATCTGTCAGGAAAGACGAGCGTTCTTGTTCTGCCAGCAAGACAGGGCGATTCTGTGCAAAGATTGCGATCTTCCAATACATTCGGCGAATCAACTTACTCGGAATCACCAACGTTTTCTTCTTACTGGTGTTAAGCTTTCTTGTGTTTCTGCATCTCAACCTAATTTTAATTCGCATCCTCTGCCGACGAATGATTCTTGTGTTGCTGAGAGTTCGACTTCTACTGCCCCGACTGCGACTGCTGACGCCATGAATGGTGTGGCAGAGTATTTGATTGAGACGCTTCCTGAATGGCATTTTGAAGAATTTCTTGATTCTTCCTCTACTACTGCTCCTCCTCCTTTTGGTTTCTCTAAGCTGCAGAGCAATGATGGTGATTGGGTTTTTCCATTTGTTGATGCTGTAGTGGAATTAGAAACCAACCCTACAGATTCTCTCTCACTGCAACACATTCAGATGGAGCTGAAGAAGGAATGTGGCGGTGGTGGAAGCGGCAGCGGCAGCGGTGGAGATTCATCTTTGGTCAGTAACATTCAGATGTTCTTGATTTTAACTATCTGA

Protein sequence

MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPVCDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSASQPNFNSHPLPTNDSCVAESSTSTAPTATADAMNGVAEYLIETLPEWHFEEFLDSSSTTAPPPFGFSKLQSNDGDWVFPFVDAVVELETNPTDSLSLQHIQMELKKECGGGGSGSGSGGDSSLVSNIQMFLILTI

Homology

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BLAST of Lsi03G008130 vs. Swiss-Prot
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-45
Identity = 105/225 (46.67%), Postives = 135/225 (60.00%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKI+CDVC K+EA +FCTAD+A+LC  CDH++HH N LA+ H RF LL+ ++ SN   P+
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSS-SNTSSPL 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA---SQPN 120
           CDICQ+++A LFCQQDRAILCKDCD  IH+AN+ T+ H RFLLTGVKLS  S+       
Sbjct: 61  CDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSK 120

Query: 121 FNSHPLPTNDSCVAESSTSTAPTATA--------------DAMNG-------------VA 180
            +S      D  V  SS S  P                    +NG             ++
Sbjct: 121 SSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTIS 180

Query: 181 EYLIETLPEWHFEEFLDSSSTTAPPPFGFSKLQSNDGDWVFPFVD 196
           EYL++TLP WH E+FLDSS     P +GFSK  S D D V P+++
Sbjct: 181 EYLMDTLPGWHVEDFLDSSL----PTYGFSK--SGDDDGVLPYME 218

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BLAST of Lsi03G008130 vs. Swiss-Prot
Match: BBX20_ARATH (B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 77/172 (44.77%), Postives = 101/172 (58.72%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKI C VC K+EA +FC AD+AALC+ CD  +H  N LA  H RF L    + +    P+
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL---TSPTFKDAPL 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSASQPNFNS 120
           CDIC ERRA LFCQ+DRAILC++CD+PIH AN+ T+ H RFLLTGVK+S   ++ P  ++
Sbjct: 61  CDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASN 120

Query: 121 HPLPTNDSCVAESSTSTAPTATADAMNGVAEYLIETLPEWHFEEFLDSSSTT 173
                ++S  A     T P + +  +   A            E F  SSSTT
Sbjct: 121 -----SNSAAAFGRAKTRPKSVSSEVPSSASN----------EVFTSSSSTT 154

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BLAST of Lsi03G008130 vs. Swiss-Prot
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.4e-29
Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQCDVC K  A + C AD+AALC  CD  +H  N LA+ H R  L    N+ +  FP 
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL----NSLSTKFPR 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVS--ASQPNF 120
           CDICQE+ AF+FC +DRA+LC+DCD  IH AN  + NHQRFL TG+K++  S   S+   
Sbjct: 61  CDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIE 120

Query: 121 NSHPLPTNDSCVAESSTSTAPTATADAMNGVAEYLIETLPEWHFEEFLDSSSTTAPPPFG 180
            + P P+N+   A    + + +      +         LP W  ++F   S   +    G
Sbjct: 121 KNQPEPSNNQQKANQIPAKSTSQQQQQPSSAT-----PLP-WAVDDFFHFSDIESTDKKG 180

Query: 181 FSKLQSNDGDW 190
              L + + DW
Sbjct: 181 QLDLGAGELDW 181

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BLAST of Lsi03G008130 vs. Swiss-Prot
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 2.3e-27
Identity = 73/171 (42.69%), Postives = 95/171 (55.56%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQCDVC K  A L C AD+AALC+ CD  +H  N LA+ H R  L    ++ +  FP 
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFL----DSLSTKFPP 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVK--LSCVSASQPNF 120
           CDIC E+ AF+FC +DRA+LC+DCD   H+ N  + NHQRFL TG++  LS  S +Q   
Sbjct: 61  CDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVE 120

Query: 121 NSHPLPTNDSCVAESSTSTAPTATADAMNGVAEYLIETLPEWHFEEFLDSS 170
            +H  P+N     + S S  PT    A +          P W  +EF   S
Sbjct: 121 KNHFDPSN-----QQSLSKPPTQQPAAPS----------PLWATDEFFSYS 152

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BLAST of Lsi03G008130 vs. Swiss-Prot
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-27
Identity = 66/134 (49.25%), Postives = 82/134 (61.19%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQC+VC   EA + C AD+AALC ACD ++H  N LA  H R PL    + S +  P 
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL----SASASSIPK 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA-SQPNFN 120
           CDICQE   F FC QDRA+LC+ CD+ IH+ N     HQRFLLTG+K+   S  + P+  
Sbjct: 61  CDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTK 120

Query: 121 SHPLPTNDSCVAES 134
           S   PTND    E+
Sbjct: 121 SS--PTNDDKTMET 128

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BLAST of Lsi03G008130 vs. TrEMBL
Match: A0A0A0K5U5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G056460 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 9.7e-86
Identity = 180/284 (63.38%), Postives = 207/284 (72.89%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHH---PNLLATNHNRFPLLHSNNNSNNH 60
           MKIQCDVCSKDEA+LFCTADDAALCS+CDHRLHH   P+LL++NH+RFPLL+ NNN+NNH
Sbjct: 1   MKIQCDVCSKDEAMLFCTADDAALCSSCDHRLHHQQQPDLLSSNHHRFPLLYPNNNNNNH 60

Query: 61  FPVCDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA---- 120
           FP+CDICQERRAFLFCQ+DRAILCKDCD+ IH ANQ+TRNHQRFLLTGVKLS  +A    
Sbjct: 61  FPLCDICQERRAFLFCQEDRAILCKDCDVAIHWANQVTRNHQRFLLTGVKLSSAAAFSLS 120

Query: 121 SQPNFNSHPLPTND---------SCVAESSTSTAPTA-TADAMNGVAEYLIETLPEWHFE 180
           S PN NSH +  N+           VAESST+TA  A    +MNGVAEYLIE LPEWHFE
Sbjct: 121 SLPNSNSHLVGANNVSSTPVSHSPSVAESSTATASAAHGCGSMNGVAEYLIEPLPEWHFE 180

Query: 181 EFLDSSSTT---APPPFGFSKLQSNDGDWVFPFVDAVVELETNPTDSLSLQH-------- 240
           EFLDSSSTT   APPP   +  +S+DGD +FPFVDAVVELE   TDSLSL+H        
Sbjct: 181 EFLDSSSTTTTNAPPPHPLAFSKSDDGDCIFPFVDAVVELEIT-TDSLSLEHWRISTSVD 240

Query: 241 ------------IQMELKKECGGGGSGSGSGGDSSLVSNIQMFL 245
                       ++ME + EC    S S SGGDS+LV  I+MFL
Sbjct: 241 VLPLCSLLIRYEVEMEKRNEC---SSDSDSGGDSTLVDTIKMFL 280

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BLAST of Lsi03G008130 vs. TrEMBL
Match: B9H4I6_POPTR (Zinc finger protein CONSTANS-LIKE 6 OS=Populus trichocarpa GN=POPTR_0005s25590g PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 8.3e-53
Identity = 117/216 (54.17%), Postives = 146/216 (67.59%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQCDVCSK+EA +FCTAD+AALC  CDHR+HH N LA+ H RF LLH    S+ +FP+
Sbjct: 1   MKIQCDVCSKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHP---SSKNFPI 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA------S 120
           CDICQ++RAFLFCQQDRAILC+DCD PIH+AN+ T+ H RFLLTGVKLS  SA      S
Sbjct: 61  CDICQDKRAFLFCQQDRAILCRDCDGPIHTANEHTQKHNRFLLTGVKLSATSAVYMSSSS 120

Query: 121 QPNFNSHPLPTNDSCVAES-------STSTAPTATADAMNGVAEYLIETLPEWHFEEFLD 180
               NS+P     +  A +       +  T+    +   + ++EYL+ETLP WH EEFLD
Sbjct: 121 SVTMNSNPPAVPSTLSANTVINKDGDNLVTSEGFGSTTSSTISEYLMETLPGWHVEEFLD 180

Query: 181 SSSTTAPPPFGFSKLQSNDGDWVFPFVDAVVELETN 204
           SSSTT   PFGFSK+     D + P++D   +LE N
Sbjct: 181 SSSTT---PFGFSKID----DGLLPYMD-THDLERN 205

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BLAST of Lsi03G008130 vs. TrEMBL
Match: A0A0D2PR68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G110700 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.0e-51
Identity = 120/230 (52.17%), Postives = 146/230 (63.48%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQCDVC K+ A + CTAD+AALC ACDHR+HH N LA+ H RF LLH +  S+   P+
Sbjct: 1   MKIQCDVCEKEAASVCCTADEAALCGACDHRVHHANKLASKHQRFSLLHPS--SSKQVPL 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA-----SQ 120
           CDICQE+R F+FC QDRAILCKDCD+PIHSANQ T+ H RFLLTGVKLS  SA     S 
Sbjct: 61  CDICQEKRGFVFCVQDRAILCKDCDVPIHSANQYTQKHDRFLLTGVKLSATSALYDGDSL 120

Query: 121 PNFNSH----------PLPTNDSCVAESSTSTA-------------PTATADAMNGVAEY 180
           P FNS           P   N S  A ++T+TA             P+ T  +++ +++Y
Sbjct: 121 PQFNSQTLVNDPFSVSPASFNPSSAAMTTTATAAVINKNSGDNNLLPSETCASVSSISDY 180

Query: 181 LIETLPEWHFEEFLDSSSTTAPPPFGFSKLQSNDGDWVFPFVDAVVELET 203
           LIE LP WH E+FLDS         GFSK  S+DG  + PFVDAV+E  T
Sbjct: 181 LIEMLPGWHVEDFLDS---------GFSK--SDDG--LLPFVDAVLERNT 215

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BLAST of Lsi03G008130 vs. TrEMBL
Match: V4JQU5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018860mg PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49
Identity = 112/222 (50.45%), Postives = 142/222 (63.96%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKI+CDVC K+EA +FCTAD+A+LC  CDHR+HH N LA+ H RF LL+ ++ SNN  P+
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHRVHHANKLASKHLRFSLLYPSS-SNNSSPI 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA-SQPNFN 120
           CDICQE++A LFCQQDRAILCKDCD  IHSAN+ T+ H RFLLTGVKLS  S+  +P   
Sbjct: 61  CDICQEKKALLFCQQDRAILCKDCDSSIHSANEHTKKHDRFLLTGVKLSATSSVYKPTSE 120

Query: 121 SHPLPTNDSCVAESS------------------TSTAPTATADA-------MNGVAEYLI 180
           S    ++  C    S                  +   P++  DA        + ++EYLI
Sbjct: 121 SSSSSSSQDCSVPGSSISNPPIKKPLSSPQSNNSKIQPSSKVDAALNQWGSTSTISEYLI 180

Query: 181 ETLPEWHFEEFLDSSSTTAPPPFGFSKLQSNDGDWVFPFVDA 197
           +TLP WH E+FLDSS     PPFGFSK  S+D D V P+V+A
Sbjct: 181 DTLPGWHVEDFLDSSL----PPFGFSK--SSDDDGVLPYVEA 215

[Close]

BLAST of Lsi03G008130 vs. TrEMBL
Match: M4CHR5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 109/215 (50.70%), Postives = 138/215 (64.19%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKI+CDVC K+EA +FCTAD+A+LC  CDH++HH N LA+ H RF LL+ ++ SNN  PV
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSS-SNNSSPV 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA-SQPNFN 120
           CDICQE++A LFCQQDRAILCKDCD  IHSAN+  + H RFLLTGVKLS  S+  +P   
Sbjct: 61  CDICQEKKALLFCQQDRAILCKDCDTSIHSANEHKKKHDRFLLTGVKLSATSSVYKPTSG 120

Query: 121 SHPLPTNDSCVAESSTSTAPTATAD------------------AMNGVAEYLIETLPEWH 180
           S    + D  V      +AP +                     + + V+EYLI+TLP WH
Sbjct: 121 SSSSSSQDCSVPSKKPLSAPQSNTSKIQLSSKIGGDSEVSQWGSTSTVSEYLIDTLPGWH 180

Query: 181 FEEFLDSSSTTAPPPFGFSKLQSNDGDWVFPFVDA 197
            E+FLDSS     PPFGFSK   +DG  V P+++A
Sbjct: 181 VEDFLDSSL----PPFGFSKSGHDDG--VLPYIEA 208

[Close]

BLAST of Lsi03G008130 vs. TAIR10
Match: AT1G75540.1 (AT1G75540.1 salt tolerance homolog2)

HSP 1 Score: 184.5 bits (467), Expect = 8.0e-47
Identity = 105/225 (46.67%), Postives = 135/225 (60.00%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKI+CDVC K+EA +FCTAD+A+LC  CDH++HH N LA+ H RF LL+ ++ SN   P+
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSS-SNTSSPL 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA---SQPN 120
           CDICQ+++A LFCQQDRAILCKDCD  IH+AN+ T+ H RFLLTGVKLS  S+       
Sbjct: 61  CDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSK 120

Query: 121 FNSHPLPTNDSCVAESSTSTAPTATA--------------DAMNG-------------VA 180
            +S      D  V  SS S  P                    +NG             ++
Sbjct: 121 SSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTIS 180

Query: 181 EYLIETLPEWHFEEFLDSSSTTAPPPFGFSKLQSNDGDWVFPFVD 196
           EYL++TLP WH E+FLDSS     P +GFSK  S D D V P+++
Sbjct: 181 EYLMDTLPGWHVEDFLDSSL----PTYGFSK--SGDDDGVLPYME 218

[Close]

BLAST of Lsi03G008130 vs. TAIR10
Match: AT4G39070.1 (AT4G39070.1 B-box zinc finger family protein)

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-33
Identity = 77/172 (44.77%), Postives = 101/172 (58.72%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKI C VC K+EA +FC AD+AALC+ CD  +H  N LA  H RF L    + +    P+
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL---TSPTFKDAPL 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSASQPNFNS 120
           CDIC ERRA LFCQ+DRAILC++CD+PIH AN+ T+ H RFLLTGVK+S   ++ P  ++
Sbjct: 61  CDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASN 120

Query: 121 HPLPTNDSCVAESSTSTAPTATADAMNGVAEYLIETLPEWHFEEFLDSSSTT 173
                ++S  A     T P + +  +   A            E F  SSSTT
Sbjct: 121 -----SNSAAAFGRAKTRPKSVSSEVPSSASN----------EVFTSSSSTT 154

[Close]

BLAST of Lsi03G008130 vs. TAIR10
Match: AT1G06040.1 (AT1G06040.1 B-box zinc finger family protein)

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-30
Identity = 75/191 (39.27%), Postives = 103/191 (53.93%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQCDVC K  A + C AD+AALC  CD  +H  N LA+ H R  L    N+ +  FP 
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL----NSLSTKFPR 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVS--ASQPNF 120
           CDICQE+ AF+FC +DRA+LC+DCD  IH AN  + NHQRFL TG+K++  S   S+   
Sbjct: 61  CDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIE 120

Query: 121 NSHPLPTNDSCVAESSTSTAPTATADAMNGVAEYLIETLPEWHFEEFLDSSSTTAPPPFG 180
            + P P+N+   A    + + +      +         LP W  ++F   S   +    G
Sbjct: 121 KNQPEPSNNQQKANQIPAKSTSQQQQQPSSAT-----PLP-WAVDDFFHFSDIESTDKKG 180

Query: 181 FSKLQSNDGDW 190
              L + + DW
Sbjct: 181 QLDLGAGELDW 181

[Close]

BLAST of Lsi03G008130 vs. TAIR10
Match: AT2G31380.1 (AT2G31380.1 salt tolerance homologue)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-28
Identity = 73/171 (42.69%), Postives = 95/171 (55.56%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQCDVC K  A L C AD+AALC+ CD  +H  N LA+ H R  L    ++ +  FP 
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFL----DSLSTKFPP 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVK--LSCVSASQPNF 120
           CDIC E+ AF+FC +DRA+LC+DCD   H+ N  + NHQRFL TG++  LS  S +Q   
Sbjct: 61  CDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVE 120

Query: 121 NSHPLPTNDSCVAESSTSTAPTATADAMNGVAEYLIETLPEWHFEEFLDSS 170
            +H  P+N     + S S  PT    A +          P W  +EF   S
Sbjct: 121 KNHFDPSN-----QQSLSKPPTQQPAAPS----------PLWATDEFFSYS 152

[Close]

BLAST of Lsi03G008130 vs. TAIR10
Match: AT1G78600.2 (AT1G78600.2 light-regulated zinc finger protein 1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-28
Identity = 66/134 (49.25%), Postives = 82/134 (61.19%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQC+VC   EA + C AD+AALC ACD ++H  N LA  H R PL    + S +  P 
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL----SASASSIPK 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA-SQPNFN 120
           CDICQE   F FC QDRA+LC+ CD+ IH+ N     HQRFLLTG+K+   S  + P+  
Sbjct: 61  CDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTK 120

Query: 121 SHPLPTNDSCVAES 134
           S   PTND    E+
Sbjct: 121 SS--PTNDDKTMET 128

[Close]

BLAST of Lsi03G008130 vs. NCBI nr
Match: gi|778730151|ref|XP_011659712.1| (PREDICTED: B-box zinc finger protein 20 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.4e-85
Identity = 180/284 (63.38%), Postives = 207/284 (72.89%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHH---PNLLATNHNRFPLLHSNNNSNNH 60
           MKIQCDVCSKDEA+LFCTADDAALCS+CDHRLHH   P+LL++NH+RFPLL+ NNN+NNH
Sbjct: 1   MKIQCDVCSKDEAMLFCTADDAALCSSCDHRLHHQQQPDLLSSNHHRFPLLYPNNNNNNH 60

Query: 61  FPVCDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA---- 120
           FP+CDICQERRAFLFCQ+DRAILCKDCD+ IH ANQ+TRNHQRFLLTGVKLS  +A    
Sbjct: 61  FPLCDICQERRAFLFCQEDRAILCKDCDVAIHWANQVTRNHQRFLLTGVKLSSAAAFSLS 120

Query: 121 SQPNFNSHPLPTND---------SCVAESSTSTAPTA-TADAMNGVAEYLIETLPEWHFE 180
           S PN NSH +  N+           VAESST+TA  A    +MNGVAEYLIE LPEWHFE
Sbjct: 121 SLPNSNSHLVGANNVSSTPVSHSPSVAESSTATASAAHGCGSMNGVAEYLIEPLPEWHFE 180

Query: 181 EFLDSSSTT---APPPFGFSKLQSNDGDWVFPFVDAVVELETNPTDSLSLQH-------- 240
           EFLDSSSTT   APPP   +  +S+DGD +FPFVDAVVELE   TDSLSL+H        
Sbjct: 181 EFLDSSSTTTTNAPPPHPLAFSKSDDGDCIFPFVDAVVELEIT-TDSLSLEHWRISTSVD 240

Query: 241 ------------IQMELKKECGGGGSGSGSGGDSSLVSNIQMFL 245
                       ++ME + EC    S S SGGDS+LV  I+MFL
Sbjct: 241 VLPLCSLLIRYEVEMEKRNEC---SSDSDSGGDSTLVDTIKMFL 280

[Close]

BLAST of Lsi03G008130 vs. NCBI nr
Match: gi|659110497|ref|XP_008455255.1| (PREDICTED: probable salt tolerance-like protein At1g75540 isoform X1 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 3.9e-80
Identity = 161/233 (69.10%), Postives = 185/233 (79.40%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHH---PNLLATNHNRFPLLHSNNNSNN- 60
           MKIQCDVCSKDEA+LFCTADDAALCS+CDHRLHH   P+LL++NH+RFPLL+ NNN+NN 
Sbjct: 1   MKIQCDVCSKDEAMLFCTADDAALCSSCDHRLHHHQQPDLLSSNHHRFPLLYPNNNNNNN 60

Query: 61  -HFPVCDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVS--- 120
            HFP+CDICQERRAFLFCQ+DRAILCKDCD+ IH ANQ+TRNHQRFLLTGVKLS  +   
Sbjct: 61  SHFPLCDICQERRAFLFCQEDRAILCKDCDVAIHWANQVTRNHQRFLLTGVKLSSAAFSL 120

Query: 121 ASQPNFNSHPL-------PTNDS-CVAESSTSTAPTATA-DAMNGVAEYLIETLPEWHFE 180
           +S PN NSH +       P +DS  VAESST+TA  A    +MNG+AEYLIE LPEWHFE
Sbjct: 121 SSLPNSNSHHVGANVSSTPVSDSPSVAESSTATASAAHGYGSMNGMAEYLIEPLPEWHFE 180

Query: 181 EFLDSSSTTAPPP----FGFSKLQSNDGDWVFPFVDAVVELETNPTDSLSLQH 213
           EF+DSSST    P      FSKLQS++GDW+FPFVD VVELE   TDSLS +H
Sbjct: 181 EFIDSSSTPTTAPHHHHLAFSKLQSDEGDWIFPFVDTVVELEKTMTDSLSPEH 233

[Close]

BLAST of Lsi03G008130 vs. NCBI nr
Match: gi|659110499|ref|XP_008455256.1| (PREDICTED: probable salt tolerance-like protein At1g75540 isoform X2 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 8.2e-78
Identity = 158/231 (68.40%), Postives = 184/231 (79.65%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHH---PNLLATNHNRFPLLHSNNNSNN- 60
           MKIQCDVCSKDEA+LFCTADDAALCS+CDHRLHH   P+LL++NH+RFPLL+ NNN+NN 
Sbjct: 1   MKIQCDVCSKDEAMLFCTADDAALCSSCDHRLHHHQQPDLLSSNHHRFPLLYPNNNNNNN 60

Query: 61  -HFPVCDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVS--- 120
            HFP+CDICQERRAFLFCQ+DRAILCKDCD+ IH ANQ+TRNHQRFLLTGVKLS  +   
Sbjct: 61  SHFPLCDICQERRAFLFCQEDRAILCKDCDVAIHWANQVTRNHQRFLLTGVKLSSAAFSL 120

Query: 121 ASQPNFNSHPL-------PTNDS-CVAESSTSTAPTATA-DAMNGVAEYLIETLPEWHFE 180
           +S PN NSH +       P +DS  VAESST+TA  A    +MNG+AEYLIE LPEWHFE
Sbjct: 121 SSLPNSNSHHVGANVSSTPVSDSPSVAESSTATASAAHGYGSMNGMAEYLIEPLPEWHFE 180

Query: 181 EFLDSSS--TTAPPPFGFSKLQSNDGDWVFPFVDAVVELETNPTDSLSLQH 213
           EF+DSSS  TTAP     +  +S++GDW+FPFVD VVELE   TDSLS +H
Sbjct: 181 EFIDSSSTPTTAPHHHHLAFSKSDEGDWIFPFVDTVVELEKTMTDSLSPEH 231

[Close]

BLAST of Lsi03G008130 vs. NCBI nr
Match: gi|659110501|ref|XP_008455257.1| (PREDICTED: probable salt tolerance-like protein At1g75540 isoform X3 [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 7.2e-66
Identity = 136/193 (70.47%), Postives = 156/193 (80.83%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHH---PNLLATNHNRFPLLHSNNNSNN- 60
           MKIQCDVCSKDEA+LFCTADDAALCS+CDHRLHH   P+LL++NH+RFPLL+ NNN+NN 
Sbjct: 1   MKIQCDVCSKDEAMLFCTADDAALCSSCDHRLHHHQQPDLLSSNHHRFPLLYPNNNNNNN 60

Query: 61  -HFPVCDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVS--- 120
            HFP+CDICQERRAFLFCQ+DRAILCKDCD+ IH ANQ+TRNHQRFLLTGVKLS  +   
Sbjct: 61  SHFPLCDICQERRAFLFCQEDRAILCKDCDVAIHWANQVTRNHQRFLLTGVKLSSAAFSL 120

Query: 121 ASQPNFNSHPL-------PTNDS-CVAESSTSTAPTATA-DAMNGVAEYLIETLPEWHFE 177
           +S PN NSH +       P +DS  VAESST+TA  A    +MNG+AEYLIE LPEWHFE
Sbjct: 121 SSLPNSNSHHVGANVSSTPVSDSPSVAESSTATASAAHGYGSMNGMAEYLIEPLPEWHFE 180

[Close]

BLAST of Lsi03G008130 vs. NCBI nr
Match: gi|224082950|ref|XP_002306904.1| (Zinc finger protein CONSTANS-LIKE 6 [Populus trichocarpa])

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 117/216 (54.17%), Postives = 146/216 (67.59%), Query Frame = 1


Query: 1   MKIQCDVCSKDEALLFCTADDAALCSACDHRLHHPNLLATNHNRFPLLHSNNNSNNHFPV 60
           MKIQCDVCSK+EA +FCTAD+AALC  CDHR+HH N LA+ H RF LLH    S+ +FP+
Sbjct: 1   MKIQCDVCSKEEASVFCTADEAALCDTCDHRVHHANKLASKHQRFSLLHP---SSKNFPI 60

Query: 61  CDICQERRAFLFCQQDRAILCKDCDLPIHSANQLTRNHQRFLLTGVKLSCVSA------S 120
           CDICQ++RAFLFCQQDRAILC+DCD PIH+AN+ T+ H RFLLTGVKLS  SA      S
Sbjct: 61  CDICQDKRAFLFCQQDRAILCRDCDGPIHTANEHTQKHNRFLLTGVKLSATSAVYMSSSS 120

Query: 121 QPNFNSHPLPTNDSCVAES-------STSTAPTATADAMNGVAEYLIETLPEWHFEEFLD 180
               NS+P     +  A +       +  T+    +   + ++EYL+ETLP WH EEFLD
Sbjct: 121 SVTMNSNPPAVPSTLSANTVINKDGDNLVTSEGFGSTTSSTISEYLMETLPGWHVEEFLD 180

Query: 181 SSSTTAPPPFGFSKLQSNDGDWVFPFVDAVVELETN 204
           SSSTT   PFGFSK+     D + P++D   +LE N
Sbjct: 181 SSSTT---PFGFSKID----DGLLPYMD-THDLERN 205

The following BLAST results are available for this feature:

BLAST of Lsi03G008130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BBX21_ARATH	1.4e-45	46.67	B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1	[more]
BBX20_ARATH	1.2e-31	44.77	B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1	[more]
BBX24_ARATH	5.4e-29	39.27	B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1	[more]
BBX25_ARATH	2.3e-27	42.69	B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2	[more]
BBX22_ARATH	3.0e-27	49.25	B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2	[more]

BLAST of Lsi03G008130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5U5_CUCSA	9.7e-86	63.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G056460 PE=4 SV=1	[more]
B9H4I6_POPTR	8.3e-53	54.17	Zinc finger protein CONSTANS-LIKE 6 OS=Populus trichocarpa GN=POPTR_0005s25590g ...	[more]
A0A0D2PR68_GOSRA	2.0e-51	52.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G110700 PE=4 SV=1	[more]
V4JQU5_EUTSA	2.5e-49	50.45	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018860mg PE=4 SV=1	[more]
M4CHR5_BRARP	1.2e-48	50.70	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Lsi03G008130 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75540.1	8.0e-47	46.67	salt tolerance homolog2	[more]
AT4G39070.1	6.5e-33	44.77	B-box zinc finger family protein	[more]
AT1G06040.1	3.0e-30	39.27	B-box zinc finger family protein	[more]
AT2G31380.1	1.3e-28	42.69	salt tolerance homologue	[more]
AT1G78600.2	1.7e-28	49.25	light-regulated zinc finger protein 1	[more]

BLAST of Lsi03G008130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730151\|ref\|XP_011659712.1\|	1.4e-85	63.38	PREDICTED: B-box zinc finger protein 20 [Cucumis sativus]	[more]
gi\|659110497\|ref\|XP_008455255.1\|	3.9e-80	69.10	PREDICTED: probable salt tolerance-like protein At1g75540 isoform X1 [Cucumis me...	[more]
gi\|659110499\|ref\|XP_008455256.1\|	8.2e-78	68.40	PREDICTED: probable salt tolerance-like protein At1g75540 isoform X2 [Cucumis me...	[more]
gi\|659110501\|ref\|XP_008455257.1\|	7.2e-66	70.47	PREDICTED: probable salt tolerance-like protein At1g75540 isoform X3 [Cucumis me...	[more]
gi\|224082950\|ref\|XP_002306904.1\|	1.2e-52	54.17	Zinc finger protein CONSTANS-LIKE 6 [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR000315	Znf_B-box

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G008130.1	Lsi03G008130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 4..44 score: 3.3E-5coord: 59..99 score: 4.
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 56..103 score: 8.2E-17coord: 4..47 score: 0.
IPR000315	B-box-type zinc finger	PROFILE	PS50119	ZF_BBOX	coord: 56..103 score: 9.94coord: 1..47 score: 11
None	No IPR available	PANTHER	PTHR31832	FAMILY NOT NAMED	coord: 1..181 score: 1.1
None	No IPR available	PANTHER	PTHR31832:SF6	SUBFAMILY NOT NAMED	coord: 1..181 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G008130	Csa7G056460	Cucumber (Chinese Long) v2	culsiB522
Lsi03G008130	CSPI07G05130	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G008130	Cucsa.345890	Cucumber (Gy14) v1	cgylsiB560
Lsi03G008130	Cla009424	Watermelon (97103) v1	lsiwmB237
Lsi03G008130	MELO3C018684	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G008130	ClCG09G013560	Watermelon (Charleston Gray)	lsiwcgB211
Lsi03G008130	Cla97C09G176180	Watermelon (97103) v2	lsiwmbB246
Lsi03G008130	Bhi05G000633	Wax gourd	lsiwgoB320
Lsi03G008130	CsGy7G004690	Cucumber (Gy14) v2	cgyblsiB489
Lsi03G008130	CsaV3_7G006080	Cucumber (Chinese Long) v3	cuclsiB555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G008130	Cucurbita maxima (Rimu)	cmalsiB117
Lsi03G008130	Cucurbita maxima (Rimu)	cmalsiB482
Lsi03G008130	Cucurbita moschata (Rifu)	cmolsiB104
Lsi03G008130	Cucurbita moschata (Rifu)	cmolsiB466
Lsi03G008130	Cucurbita pepo (Zucchini)	cpelsiB206
Lsi03G008130	Cucurbita pepo (Zucchini)	cpelsiB544
Lsi03G008130	Cucumber (Gy14) v2	cgyblsiB411
Lsi03G008130	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G008130	Silver-seed gourd	carlsiB590
Lsi03G008130	Silver-seed gourd	carlsiB674