Lsi03G008110 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G008110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 12214241 .. 12214432 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAA

mRNA sequence

ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAA

Coding sequence (CDS)

ATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGGAAAAGAATAAAAGAATAGAAGAAGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAA

Protein sequence

MIYFTGEVSGSSPGWPSYAKEKNKRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV

Homology

[Close]

BLAST of Lsi03G008110 vs. TrEMBL
Match: A0A166G702_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001145 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-13
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 24 KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV 64
          KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Sbjct: 9  KRIEEASDSFMHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 48

[Close]

BLAST of Lsi03G008110 vs. TrEMBL
Match: K4D765_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.4e-11
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 24  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV 64
           KRIEEASD FM APLGSGGYSSVGRA LL+LGRCDYGLDV
Sbjct: 77  KRIEEASDYFMHAPLGSGGYSSVGRALLLKLGRCDYGLDV 116

[Close]

BLAST of Lsi03G008110 vs. NCBI nr
Match: gi|1021050837|gb|KZN08615.1| (hypothetical protein DCAR_001145 [Daucus carota subsp. sativus])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1


Query: 24 KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV 64
          KRIEEASDSFM APLGSGGYSSVGRAPLLQLGRCDYGLDV
Sbjct: 9  KRIEEASDSFMHAPLGSGGYSSVGRAPLLQLGRCDYGLDV 48

[Close]

BLAST of Lsi03G008110 vs. NCBI nr
Match: gi|698440134|ref|XP_009759657.1| (PREDICTED: uncharacterized protein LOC104212153 [Nicotiana sylvestris])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 24  KRIEEASDSFMQAPLGSGGYSSVGRAPLLQLGRCDYGLDV 64
           KRIE+ASD FM APLGS GYSSVGRAPLLQLGRC+YGLDV
Sbjct: 390 KRIEKASDYFMHAPLGSEGYSSVGRAPLLQLGRCNYGLDV 429

The following BLAST results are available for this feature:

BLAST of Lsi03G008110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G008110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A166G702_DAUCA	1.6e-13	97.50	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001145 PE=4 SV=1	[more]
K4D765_SOLLC	3.4e-11	90.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Lsi03G008110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G008110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021050837\|gb\|KZN08615.1\|	2.4e-13	97.50	hypothetical protein DCAR_001145 [Daucus carota subsp. sativus]	[more]
gi\|698440134\|ref\|XP_009759657.1\|	1.1e-10	87.50	PREDICTED: uncharacterized protein LOC104212153 [Nicotiana sylvestris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G008110.1	Lsi03G008110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G008110	Silver-seed gourd	carlsiB590
Lsi03G008110	Silver-seed gourd	carlsiB674
Lsi03G008110	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G008110	Watermelon (97103) v2	lsiwmbB246
Lsi03G008110	Wax gourd	lsiwgoB320
Lsi03G008110	Cucumber (Gy14) v1	cgylsiB560
Lsi03G008110	Cucurbita maxima (Rimu)	cmalsiB117
Lsi03G008110	Cucurbita maxima (Rimu)	cmalsiB482
Lsi03G008110	Cucurbita moschata (Rifu)	cmolsiB104
Lsi03G008110	Cucurbita moschata (Rifu)	cmolsiB466
Lsi03G008110	Cucurbita pepo (Zucchini)	cpelsiB206
Lsi03G008110	Cucurbita pepo (Zucchini)	cpelsiB544
Lsi03G008110	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G008110	Cucumber (Chinese Long) v2	culsiB522
Lsi03G008110	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G008110	Watermelon (Charleston Gray)	lsiwcgB211
Lsi03G008110	Watermelon (97103) v1	lsiwmB237
Lsi03G008110	Cucumber (Gy14) v2	cgyblsiB411
Lsi03G008110	Cucumber (Gy14) v2	cgyblsiB489
Lsi03G008110	Melon (DHL92) v3.6.1	lsimedB260