Lsi03G007350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G007350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 9886496 .. 9886774 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAGAAGCTTCGTTGTTCTTCTTCTAGTCCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCACCATTCACACCCGAAGTCGCCGGCGCCTGCACCGTCTCCGGCAGTTGTGGTAGCTCCGTCGGTGTCGCCGTCTTCTATTGCCGGAACTCCTGTTGAGGCGCCTGCACCGGCGGCGAGTGGCGCTGGTTTTGCTAGTGGATTTGGTGTTGCTGGATCAACAATGGCTGTTAGTGTTGGGATCTTTGCTGCTGCTTTGTTTGTTTAG

mRNA sequence

ATGGCTTCCAGAAGCTTCGTTGTTCTTCTTCTAGTCCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCACCATTCACACCCGAAGTCGCCGGCGCCTGCACCGTCTCCGGCAGTTGTGGTAGCTCCGTCGGTGTCGCCGTCTTCTATTGCCGGAACTCCTGTTGAGGCGCCTGCACCGGCGGCGAGTGGCGCTGGTTTTGCTAGTGGATTTGGTGTTGCTGGATCAACAATGGCTGTTAGTGTTGGGATCTTTGCTGCTGCTTTGTTTGTTTAG

Coding sequence (CDS)

ATGGCTTCCAGAAGCTTCGTTGTTCTTCTTCTAGTCCTCGCTTTGGTAGCTTCTTCTGCTACGGCAGGGCATCACCATTCACACCCGAAGTCGCCGGCGCCTGCACCGTCTCCGGCAGTTGTGGTAGCTCCGTCGGTGTCGCCGTCTTCTATTGCCGGAACTCCTGTTGAGGCGCCTGCACCGGCGGCGAGTGGCGCTGGTTTTGCTAGTGGATTTGGTGTTGCTGGATCAACAATGGCTGTTAGTGTTGGGATCTTTGCTGCTGCTTTGTTTGTTTAG

Protein sequence

MASRSFVVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVVAPSVSPSSIAGTPVEAPAPAASGAGFASGFGVAGSTMAVSVGIFAAALFV
Homology
[Close]
BLAST of Lsi03G007350 vs. TrEMBL
Match: A0A0A0K427_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.6e-25
Identity = 78/93 (83.87%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 1  MASRSFVVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVVAPSVSPSSIAGTPVEAPA 60
          MASRSF+VLLLVLALVASSATAGHHHSHPKSPAPAPSPAVV APSV PSSI+GTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFASGFGVAGSTMAVSVGI-FAAALFV 93
          PAA+GAG  SG      +MAVSVGI FAAALFV
Sbjct: 61 PAANGAGLVSG------SMAVSVGIFFAAALFV 87

[Close]
BLAST of Lsi03G007350 vs. NCBI nr
Match: gi|659110322|ref|XP_008455166.1| (PREDICTED: classical arabinogalactan protein 10-like [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 1 

Query: 1  MASRSFVVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVVAPSVSPSSIAGTPVEAPA 60
          MASRSF+VLLLVLALVASSATAGHHHSHPKSPAPAPSPAVV APSV PSSI+GTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFASGFGVAGSTMAVSVGIFAAALFV 93
          PAASGAGF SG      +MAVSVGIFAAALFV
Sbjct: 61 PAASGAGFVSG------SMAVSVGIFAAALFV 86

[Close]
BLAST of Lsi03G007350 vs. NCBI nr
Match: gi|700188511|gb|KGN43744.1| (hypothetical protein Csa_7G064050 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 5.1e-25
Identity = 78/93 (83.87%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 1  MASRSFVVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVVAPSVSPSSIAGTPVEAPA 60
          MASRSF+VLLLVLALVASSATAGHHHSHPKSPAPAPSPAVV APSV PSSI+GTPVEAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFASGFGVAGSTMAVSVGI-FAAALFV 93
          PAA+GAG  SG      +MAVSVGI FAAALFV
Sbjct: 61 PAANGAGLVSG------SMAVSVGIFFAAALFV 87

The following BLAST results are available for this feature:
BLAST of Lsi03G007350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G007350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K427_CUCSA3.6e-2583.87Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064050 PE=4 SV=1[more]
BLAST of Lsi03G007350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G007350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110322|ref|XP_008455166.1|1.9e-2786.96PREDICTED: classical arabinogalactan protein 10-like [Cucumis melo][more]
gi|700188511|gb|KGN43744.1|5.1e-2583.87hypothetical protein Csa_7G064050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G007350.1Lsi03G007350.1mRNA