Lsi03G007340 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G007340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 9882022 .. 9882489 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCACTCTGCCCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCCCCCTCTCCATCTCCGTCACCAGCCCTGTCCCCCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCACCAACGCCGTCGCATGAAACCAAGCCCACTCCACCGCCGTCGTCTCCGGCACCAGCACCGTCGCCTACTCCAGTTCCGCCGCTGGCTCATCACCATGCACCAACTCCGGGTCCAGTTTCCCCGCCGCCGCCGCAGAGCCCTTCTCCGTCCCCTCTGTCAGTACCATCTCCGTCTCCGTCTCCGTCCTGGATCGACGGACCGCCGTCGGAAGCACCGGCGCCGTCAAAACCGAAGAGCGATGCCTTTCATAATAGATTCTCGGTGGTGGGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA

mRNA sequence

ATGCCTCACTCTGCCCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCCCCCTCTCCATCTCCGTCACCAGCCCTGTCCCCCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCACCAACGCCGTCGCATGAAACCAAGCCCACTCCACCGCCGTCGTCTCCGGCACCAGCACCGTCGCCTACTCCAGTTCCGCCGCTGGCTCATCACCATGCACCAACTCCGGGTCCAGTTTCCCCGCCGCCGCCGCAGAGCCCTTCTCCGTCCCCTCTGTCAGTACCATCTCCGTCTCCGTCTCCGTCCTGGATCGACGGACCGCCGTCGGAAGCACCGGCGCCGTCAAAACCGAAGAGCGATGCCTTTCATAATAGATTCTCGGTGGTGGGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA

Coding sequence (CDS)

ATGCCTCACTCTGCCCTTCTCAACGCCCTCTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCCCCCTCTCCATCTCCGTCACCAGCCCTGTCCCCCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCACCAACGCCGTCGCATGAAACCAAGCCCACTCCACCGCCGTCGTCTCCGGCACCAGCACCGTCGCCTACTCCAGTTCCGCCGCTGGCTCATCACCATGCACCAACTCCGGGTCCAGTTTCCCCGCCGCCGCCGCAGAGCCCTTCTCCGTCCCCTCTGTCAGTACCATCTCCGTCTCCGTCTCCGTCCTGGATCGACGGACCGCCGTCGGAAGCACCGGCGCCGTCAAAACCGAAGAGCGATGCCTTTCATAATAGATTCTCGGTGGTGGGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAA

Protein sequence

MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDGPPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL
BLAST of Lsi03G007340 vs. Swiss-Prot
Match: Y091_NPVOP (Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=ORF92 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-06
Identity = 59/117 (50.43%), Postives = 69/117 (58.97%), Query Frame = 1

Query: 22  PSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPS---SPAPAPSPTPV 81
           PSP+P+PALSPTP  +PSP    TP   P P PTPS    PTP PS   SP P PSPTP 
Sbjct: 69  PSPTPTPALSPTP--TPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPS 128

Query: 82  PPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDGP---PSEAPAPSKPKS 133
           P       PTP P +P P  SP+P+P   PSP+P+PS    P   PS  P+P+ P S
Sbjct: 129 PTPTPSPTPTPSP-TPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPPPS 182

BLAST of Lsi03G007340 vs. TrEMBL
Match: A0A0A0K238_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064060 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-29
Identity = 105/156 (67.31%), Postives = 111/156 (71.15%), Query Frame = 1

Query: 1   MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHE 60
           MPHS LLNALLAAALLFSAAA SPSPSP  SPTPPAS SPPWRW PITKPP  PPTPSHE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSP--SPTPPASLSPPWRWAPITKPPTQPPTPSHE 60

Query: 61  TKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDG 120
           T+P+ PP      PSPT VPP AHH  P            P+  P    SPSPSP+WI  
Sbjct: 61  TEPSTPP------PSPTSVPPPAHHDEP------------PTAQP---DSPSPSPTWIAE 120

Query: 121 PPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL 156
           PPSEA +PSK KSD F N FS+VGSVAIGAMAAA L
Sbjct: 121 PPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133

BLAST of Lsi03G007340 vs. TrEMBL
Match: A0A093H3P1_PICPB (Neurofilament heavy polypeptide (Fragment) OS=Picoides pubescens GN=N307_08864 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-06
Identity = 61/114 (53.51%), Postives = 73/114 (64.04%), Query Frame = 1

Query: 21  APSPSPSPALSPTPPASPSPPWRWTPITKPPPPPTPSHETKPTPPPSSPAPAPSPTPVPP 80
           +P PSPSP  SP+PP SPSPP   +P   P PPP+PS    P+PPP SP+P PSP+P P 
Sbjct: 51  SPLPSPSPPPSPSPPPSPSPPPSLSPPPSPSPPPSPSPLPSPSPPP-SPSPLPSPSPPPS 110

Query: 81  LAHHHAPTPGP-VSPPPPQSPSPSPLSVPSPSPSPSWIDGP-PSEAPAPSKPKS 133
            +   +P+P P +SPPP  SP PSP   PSPSP PS    P PS  P+PS P S
Sbjct: 111 PSPPPSPSPPPSLSPPPSPSPLPSPSPPPSPSPPPSPSPPPSPSPPPSPSPPPS 163

BLAST of Lsi03G007340 vs. NCBI nr
Match: gi|778730170|ref|XP_011659717.1| (PREDICTED: vegetative cell wall protein gp1-like [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 105/156 (67.31%), Postives = 111/156 (71.15%), Query Frame = 1

Query: 1   MPHSALLNALLAAALLFSAAAPSPSPSPALSPTPPASPSPPWRWTPITKPP-PPPTPSHE 60
           MPHS LLNALLAAALLFSAAA SPSPSP  SPTPPAS SPPWRW PITKPP  PPTPSHE
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSP--SPTPPASLSPPWRWAPITKPPTQPPTPSHE 60

Query: 61  TKPTPPPSSPAPAPSPTPVPPLAHHHAPTPGPVSPPPPQSPSPSPLSVPSPSPSPSWIDG 120
           T+P+ PP      PSPT VPP AHH  P            P+  P    SPSPSP+WI  
Sbjct: 61  TEPSTPP------PSPTSVPPPAHHDEP------------PTAQP---DSPSPSPTWIAE 120

Query: 121 PPSEAPAPSKPKSDAFHNRFSVVGSVAIGAMAAALL 156
           PPSEA +PSK KSD F N FS+VGSVAIGAMAAA L
Sbjct: 121 PPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y091_NPVOP4.0e-0650.43Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosi... [more]
Match NameE-valueIdentityDescription
A0A0A0K238_CUCSA1.8e-2967.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G064060 PE=4 SV=1[more]
A0A093H3P1_PICPB8.1e-0653.51Neurofilament heavy polypeptide (Fragment) OS=Picoides pubescens GN=N307_08864 P... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778730170|ref|XP_011659717.1|2.6e-2967.31PREDICTED: vegetative cell wall protein gp1-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G007340.1Lsi03G007340.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 75..96
score: 3.3E-9coord: 34..50
score: 3.3E-9coord: 62..74
score: 3.3E-9coord: 20..32
score: 3.