Lsi03G007120 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G007120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 9514223 .. 9522280 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTGTAATATTATTCGTGGGTGTGAATATTAAATATCTTACTGTTAAAGAACTTGAATATTTGGAATAATAGCTAACATGAGTGTAGTTTGGCAGGCATGAACTTATATTATCAACTTCGAGATCTAAGGTTCAATCTCCTACTACACATTTCGTAAAAAAAATGTTTGAAATAATAAACGTGCGTGTAAATAGCATAATTAAACAAATAAACATAGATTTTCTATATATGTTTGTCAAAATCTTTCAAATCCAGTACAACAAAATAGGGCTCAGGGCCTATAGAGAGTCTGTTTTAAACAATCCCATGCGAACTAGTTAGGGCTAATTTGATGAGATTTTTCTTCTTTTTTTTTCCTCTCTCATAAGATGGTCCATACCTAATTTGAAGGAAAATTTTCACAGCTAGAAAAAATATCAAACTATTTACAGAAAATAGCAAAAAAAAAAAAAAATACTCATAGACATTGATAGACTTCTATCAGCATCTATCAGTCTATCATTTCTATCACTAATAGATCCCGATAGACTTCTATCAGCGTCTATCACAACTATTTAAAAATTTTGCTACTTTGTGTAAATAATTTTCCTTATTTTTCTATGTCTAAAACTTCCCCTAATTTTAATGTAATTTTTAAGTTTAATACTACTTTTATCCTTGTATTTTTGGCTTTGGTTCATTTAGTCTTTTTACTTTCAATTTTGGTTCATTTTGATTTATATGTTTTTAAATTTGATTTTTTTTTTGTCATTTCACATATTTTTATTTTTAAGGGACTAAAATAGTCAACTTTTGAAAAGTACCAGGACCATAACTAAAAGTTAAAAATCAAGTTTTTTTATTTTTATTTTATTTTATTTAAAAAACGAGATTGAGAGTAAAAAAATTAAAATGAACATTTTGAAAGTATACAAATTAAAATAAACTAAAGTACAAGGACCAAAATGATGAATTTTAAAGTACAATAATCATAAAATGGACCAAATTAGTATTGAAACCTAATTTTAAAGTAAATTCATAAAGTACATATTCTCCAAAGCTGTCTAATTATTCTAATTTAGATAAATGTTAAGTAAAAGATATCCTAGCATTTTGAGTAGCTCAAGTAAGAGATATGCTTAATTGCATCAATTCCTCTTTTTTATTATCTAAGAAAGGTCAAAGAAATTAGTAAAATTTACATCTGTGGCTTATATATTACGGACTAAATATATTTAAAAAAAATAGCATAGTAATTTAAAATTTTATTTTCGTAAAATGCATTTTCATATGCAGCTTTTATCTTTAATTACATTTTTTTTACAGAACAGTAATTATTTATAAATAATTATCAACAAGTCTATTTTTAAATTTTCATTTAAAAAAAGGTTAAAAAAAACACAAAACACAAAGTATCTTATGAAATGATCCTTAATCTCTAATTATTCTCTTTAACAATGTATATAAACTTTCTCAATACCCTCATTCTCCTTTTACTAATTATCTTCCACTATAAGCTTAAACTCATAGTTGAACTGATTAGAAAAAGAAAATATAAAACATTTTTTTCCTTAAATAATTATCATTGTTATATTGCAACAAAAACTCAAAGTTGATGAGAAAACCTTTTTTCTTTTTCTTTAGTTTTATAAATTACAGAGACTTGCACTAGTTAGCATTTTTAGAAATAATAATTAAGTGTATAGCAAAAATTTTAAAGAATTATAAATATAGCAAAATTTATGAGTGATAGACTCTATCGATGATGATGATAGACTCTAAAAATTGAATCTAAATTTTGTTATAACTGCAAATTATTTTGAATTGTGTTATATATGATAATATTTTGGTTTGATTGCTATATTTGCCACTCCTCCTAATTTTATTGGGAATATTTTTCATGTTTCATTTGTAATAATGTTATAAATTGTTTAAAGTATTATGTATACATTTAAATATAATATAACTTTAGTATTTTTTTTCTTTCCATCTGAAGCATCCAGGGGATACTTGAGAGACATAATAGTGTTCATTCAGAGAACCTTCCCAATTTGAATGAACCATCAGTTGAGTTGCAGGTAATTAATTAATAATATCTATTTAGTTCATAAATCTAGAGTTATTTTCAAACATACAGTGATTATTTATTTCCTCAAAATTACATCTTACAGTATTAGATTACTGTTGAAACAGCTTTAAAATCAGACCTAGTTAGGGCAAAATGGTAATATACATATAAAAAAAAGTAACTTATTTAGATCTTGGTAGAATGATCTTGAATAGATATGGTAGTTCAGGGATAAACCATTCCCAAAATTCTAATTCAAGAATGTTGAATTTTCTGTAAAAACACATCTTTTTTAATGAAATGTAAAGGTCAGACTCATATGTATTAATTGAACATGTTATTATTGAATTCGTTAAATCATAAGTTTAGTCCCGAAAACTTTAAAGTTTTTGTTTTGGTCTCTAAAATTTTTTAAAAATTTAATAGGCTATGAATTTTCAATTTTTGTGTTTAATAGATATTCTTGAGTATTAATAATGTCTAATAAGTCTTAATATATTCGATATTTTTAAGATAAATAGATTAGAGAAAAGTTTGAATTTTATGTCCAAGAGAATTATATCTCATAAGTTTTTGAATTCTTAAAAATATCAATTATGCTAAAAGTTTAAACTACCTAATAGCACAAACTATTAGAAACTAAATTAAAAGTTTAAAAGTTTTATAGGTTTTAAGATTTTGAGGTTTTGAGACCTAACTATTAGAAACTAAATTAAAAGTTTAGGGATCTATTTGACATAGTTTAAAGTTTAGAAATCTATTAGCACAAATTAACTTTAAAGTTTAAAGACTAAACTTGTAATTTAACATAATAAAATAACAAGATGTTCTTTAATGTAAAGAAGTTGAACGGAAAGGAGAAGAAATTAGAGCTCGTTTGATAACTATTTTGATTTTTGTTTCTAGTTTTTGTAAATTAAGCTTACAAAAACTACTACTATTCATAAGTTTCTATGTTTTGTTATCCACTTTCTACTAGTGTTCTAAAAAACTAAAAAAAATGTAAGAATTGAACTAGAACTTCAAAAAAAACATTATCAAACGAAGCCTAAATAATCATTTTGAATGAAATTTTTTTCTATATGGTCAATATGAGAATAGAAACTCATCCGTTGAACATCTCTCTATTTCTTTTAAAAGACCGTTTGTTTGAATCCTCCACCCCACATGATGTCATTGTCTTTTTAACAGCTCGAGAGTAATATTCGAGCCAAGTTGAATGATGAAGTTGAGAAAAAGAGCCATGAACTGAGGTGAGTGCAAAACCACTAAGGCATTTTTGAAGAACACATTGTTATTCATTTCTAAGCAAAGGCATTTGTGTGAATAAATGTGTGTATAATAGGCAAATGAAAGGAGAGGAGCTTCAAGGGTTAGGGTTGGAGGAACTTAAGAAATTAGAGAAATCACTTCAAGGAGGACTCAACCGTGTTGCAGAAATTATGGTTAATTAATTCAATCATTTTTGTTTTTTGTTTTTTACTCTAATTAACATCCCATCATTTAACCTAAGTTTGGCAAATGAATTTATATATGTTTCAGGATGGAAGAAATACTGAATTGATCAGTGATATTGGAAGGAAGGTAATCCATTAATTAAGCTCTTCAAATCAATTATTTGTATTGGAAACCATTAGATTAATCTTATTAGTAATTCTTGAGGATCCCACGTTCAAAATACTAAAAGAACTCATAATGTTTATAAGATAGACGAGTTACTTCTCTCTTAGTCAATTGGTTTTGAGATGGATCTCAGTTATTGAGCATTCGGTCCAAAAATAAAAATTGAGATCCCATCCAAGAATGGTGAACTCAAGGAGGCATCATTTTGAGGAGCGTGTTGAGGATCATATCCTAGTTAACCATATCTATGACACACCCTAATGGCTTGATATTGTTAGTGTTATAGGCTTTGATATTGTTAGGGTTGGGAAGAACCTCCCATTACTATCGTTGGAATAAGTAGAAAAATAATAGAGAAATTGAAAGAAAACAATAAAACTAGGAACATAAGAATTTACGTGGAAAAACTCCAAACTGGAGAAAAACCACGGACTCGAAAAATTTCACTATGTGAAAATTTATTAAAATCACACAAAATTATTCTCTCTCTCCCGATCTCGATTACAAGAGCACTCTCTCAAAGTCTTTGTACCCACTCACACCCTTTAATCCCACTTTCAAACTAGAGTATACAAAGAGGAAATTTAAATACAGTTAGCACACCTAAACTTAAAATGTTTTGAACTGGGACAATTTGAAACCAAAACCATAGGCTCCTTTTGTAGTGCTTGAAGCTCATCACTTTCATGAATCTTTTCGATGTGAGAAATAACTGCACTTCTAATATTTTGCCAAGATCCAACAAATTCCATCTTGGTAAGATATTTGAAGAATCTACAACTTCTGCTACATCTATTATCCTCACCAACAATCATAATTCTCAACTCAGAGAATTCTAACTCACTTCGCTACAAAGAATAGGCCACTTGGAAAATCATCTTCCAAGATTTTCCTTATCTTCTCTGCTCGAAAACTTTCTTCTTTGAACCTCTACTAGAATCACTCTTTGACTCCAAAACCACCATCACAACTTAACTTGCACTTGTGTAACTCATATTGTATTAACACATCCTTGACTTGTACATGCTACAAGTCGAAGTTGATCCTTCCATCAAATTTCTCTACTTCATAATTTACTAGGACTTATAAAGCTTGACACACATCTGCAAATAGTGTACAACTACTATTCACAATCACGCAACACGTTTCAAGAATTCTTTTCTGATATGGAAGTCCGACAATACTGCAACCATGGAGTATACTCAGAAATTCAAGAAACTACGGATGTACTAAAGCTCTGATACCACTTATTGAGGACAACGACCCTCCAAATATCTTCATAATGGTATGATATTGTCCATTTTGGGCATAAAATCTCATGGCTTGATTTTATCCCAAAGGCCTCGTACCAATGAAGATAGTTGTCCTTACTTATATACCCATGATGATCATCTTCTTATCTACCAATGTGAGACTTTGGTTGCTTCCCAAAAATCCAAACTTCACTAATTTTAGCAGTGAAGGAAGAGATCTATAGTATATGAGTGATCCATGGTATATGGAGATGGGAAGAAAGAGACCCCTAGTATATGAGTGAAGACAAATATCGCTATTGGTACAAGATCTTTTGGATGAAACTAAAAAACAAAGCCATGAGATCGACCTTATGTCCAAAGTAAATAATATCATACTAATGTAAAGACTGGTAGATATTTCACTTCTATCTTTTCTTCCCTCCATTCTCCCGCAAATAATGCTCTAATTCCAAATTAGTAAATCCCTAATCATTTATGCAAATTACAGAATGGTCACAGTCACGTTCCCAACTCTCCCTTCATCACTTGAACATGAACTATTAACCCTAAACCCTAAACATAAACACATGCCCTTCCTCTCAATCTAATCCAAAACACTTATATAAATTACTATAAAAGTTTGAACAAAACCATTAAAATATTGATATATTTAAACTTACTGTAACTTAACTTAAGTTTTTAGATCTAATGATTAGTTTTATATGGTATTACGACGTAAAGTCTTTATAATGTCATTTTCTATCTAATTCATATTGATTTTCATATATTTGTCATTTTACAAATTTGCAAGACTATAAATGAAGGAGAATATTAAAAGTATCATATAATTAAATTTATCGTAATCTATAAATTTAAATGAGGAATGCTGGATCATAGAATTAGGCATATTAGTATGTATGGTCTAATTATTCCTTCATTTTTTTTAATTTTAATTTGTTTCTAATTTCGTTTTGGGATTCCAATGGTTTAGTTTATTCTAATTGAAACACAGTTTCATTTATACGTCGAATTATGAAGGAGAGTAATAGATGTTATTGTATTACTAAAAATTTCTCAATTTACTTGTTATTCTTTTCTAAAAATATTATTTGGAGCCTTAATTACTTGTTCTACTACTTAAAATGCACCAAAACCTGTAGCCTATTACATTTTTAGCTACTGGTTCAAGTTTTAATGTTGCAAGAGAACTAAGGTACTCAAGGAAGCATGTTTATTTATGGAGCTATATAGGTTAAATATTCATATTAATTGCCATTTCAATTTAGTCTAAGGCTATTACTCAATAAAGTTTTTGGAAAAATACCAATTTATACCTTTAAACTTTAGGGTTGTATCAATTTAAATCCTGAGCTAATAATTGTATCAATTTAAATTCTGAACTTTTATAAGTGTATCAGTTTACACCCTCCATTACGTTTCGTTTGGAAAAACTTCATGTGAAACTTATAATTGTATCAATAAAACTCCTAAACTTTCATAAATGAATCAATTTAGACTCTTAAATGGAATTTCATTTGAAAATTGTTCATGTATTTATTCTAATTGTCCATTTTCTAAAATTAACATTAAGAAAAGTCTACACACGCTAGTGAATTAATTCATGGATATTGATTTTCAAAAGTCATCGAAATGAATAGTCTAAATTGACTTATGACTTGTTTATAATTTTTTAATTTATCCAACACAACACATCCCTTTTTTACATTACTTATAATTACTTCCTACATGAAAACTCACATTATTTCTTTTGTAATTTACTCGCCTAAAGTATGGTATGGGGGAGATTTGAACTTTTAAATCTTTGAGTTAGAAAGTATATATTGTTTCTCAATTAAACTATGCTCATGTTGGGATGCTATAATAATGTTTTATTTGACATATCAATAATATACAAACTTTTATAAATTTTATAAAAAAATGTAAATTTAATATAAACAACTTGATTTATAGTTTGCCAAAGTAAGCATATATAGTTTAGCAATAATTGATATGTACTACATGCTTTCAGGTCAGAGTTTCAAATCTTCATATCATGTCTGTTGTAAAAAAATCATGTTAGTTTAATATTTCAAACCAATGATTGAGTTAGCAATTCATTTTATAAATCAACTTAATTCACGCATCCAGTTTATATATGATATAGCGCTATTTTCAAATATAGAAAAATGAATCAAAATATTTGCCAAATATAGCAAAATTTCACTATCTATTTGTCAAATAGATAGTGAAATTTTGCTATATTTGTAAATATTTTTAGCATTCTATAATGGTTTAAATATTACTTTGAACCCTCTACTTTTGGGTTTGGTTCATTTTAGTTCATGTACTTTTAAAATGTTCATTATGACTCCTATACTTTCAACTTTGGTTCATTATGGTCCCTGTACTTTCAAAATGTTCATTTTGGTCCTTGAACTTTCAACTTTGGTTCATTTTAGTCCTTAAACTTTCAAAAATAGATCATTTTGATGCCTTAAAAATGAAGTAAAAATGAAAGTGGGGGGACCATAATGGTCACTTTTTAAAAGTATAAGGACCAAAATGAACATTATGAAGTACATGGACCAAAATGAACATTTTGAAAGTATAAGGATCAAAATGAACTAAAATCAAAATTATAGAGACCAAAGTAGTATTTAAACCTTCTATAATTTAAAATAATTTTCCTATGATATATGAATTAAATTGTTTTTTTTTTCAGTAAAATAAATACAAAATTGTTTACTAAATAAAATCAAACACACCTGGTCTCAAAATAATAACAATAATAATAATCAAACACACATTGTAAATTATTTTTGATACATTCTACACAAAGGGGTAAATATGTTAAATTGCTGCCCATTTCGTGTGAGAATCTTAAAAACCCACCTTTATAAACATCCAAATAGGTTTATGTGCCGTTATAAATGAACATCTTAATAGCCTCTACAACTTTAAAAGTTTATATTAGAATCATTAATAATGGTGAATCATATATTGCAGTGAATATATATTTGAAAGGATACCGAACTGAACCCAATCGAACCGATTATACCTTTAACCGAGCCCTCTATACATCTGCCCATTCACCCTTTTAGAATAGATTTCACCCACAACATCTACAACTTCTTACTCAAAAGATAA

mRNA sequence

ATGAATATTGGGATACTTGAGAGACATAATAGTGTTCATTCAGAGAACCTTCCCAATTTGAATGAACCATCAGTTGAGTTGCAGAGTTATTTTCAAACATACAGTGATTATTTATTTCCTCAAAATTACATCTTACAGCAAATGAAAGGAGAGGAGCTTCAAGGGTTAGGGTTGGAGGAACTTAAGAAATTAGAGAAATCACTTCAAGGAGGACTCAACCGTGTTGCAGAAATTATGGATGGAAGAAATACTGAATTGATCAGTGATATTGGAAGGAAGGATACCGAACTGAACCCAATCGAACCGATTATACCTTTAACCGAGCCCTCTATACATCTGCCCATTCACCCTTTTAGAATAGATTTCACCCACAACATCTACAACTTCTTACTCAAAAGATAA

Coding sequence (CDS)

ATGAATATTGGGATACTTGAGAGACATAATAGTGTTCATTCAGAGAACCTTCCCAATTTGAATGAACCATCAGTTGAGTTGCAGAGTTATTTTCAAACATACAGTGATTATTTATTTCCTCAAAATTACATCTTACAGCAAATGAAAGGAGAGGAGCTTCAAGGGTTAGGGTTGGAGGAACTTAAGAAATTAGAGAAATCACTTCAAGGAGGACTCAACCGTGTTGCAGAAATTATGGATGGAAGAAATACTGAATTGATCAGTGATATTGGAAGGAAGGATACCGAACTGAACCCAATCGAACCGATTATACCTTTAACCGAGCCCTCTATACATCTGCCCATTCACCCTTTTAGAATAGATTTCACCCACAACATCTACAACTTCTTACTCAAAAGATAA

Protein sequence

MNIGILERHNSVHSENLPNLNEPSVELQSYFQTYSDYLFPQNYILQQMKGEELQGLGLEELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTELNPIEPIIPLTEPSIHLPIHPFRIDFTHNIYNFLLKR

Homology

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BLAST of Lsi03G007120 vs. Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEE 64
           +LERHN + S+NL  L++PS+ELQ    S     S  +  +++ L+QM+GEELQGL +EE
Sbjct: 65  VLERHN-LQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEE 124

Query: 65  LKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           L++LEK+L+ GL RV E    +    IS++ +K  +L
Sbjct: 125 LQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQL 160

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BLAST of Lsi03G007120 vs. Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-10
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEE 64
           ILER + +HS+NL  L++PS+ELQ    S +   S  +  +++ L+QM+GEELQGL +EE
Sbjct: 65  ILERRD-LHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEE 124

Query: 65  LKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           L++LE+SL+ GL+RV E    +    I+ + +K   L
Sbjct: 125 LQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHL 160

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BLAST of Lsi03G007120 vs. Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 37/96 (38.54%), Postives = 63/96 (65.62%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQSYFQTYS---DYLFPQNYILQQMKGEELQGLGLEEL 64
           I++++N+ HS NL    +PS++L      Y+   + L   +  L+QM+GEEL+GL ++EL
Sbjct: 65  IIDKYNT-HSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDEL 124

Query: 65  KKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           ++LEK+L+ GL+RV    D +  E IS++ RK ++L
Sbjct: 125 QQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQL 159

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BLAST of Lsi03G007120 vs. TrEMBL
Match: B9S9I5_RICCO (MADS-box transcription factor, putative OS=Ricinus communis GN=RCOM_0885930 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQSYFQT-YSDYLFPQNYILQQMKGEELQGLGLEELKK 64
           ++ERHN +H  NL  L++PS+ELQ    T  S  +  +   L+QM+GEELQGL +EEL++
Sbjct: 25  VIERHN-LHPRNLGRLDQPSLELQLENCTALSKEVAEKTQELRQMRGEELQGLSMEELQQ 84

Query: 65  LEKSLQGGLNRVAEIMDGRNTELISDIGRKDTELNPIEPIIPLTEPSIHLPIHPFRI 121
           LEKSL+GGL RV E  D   T  I+D+ RK  EL  +E    L +  ++ P+   ++
Sbjct: 85  LEKSLEGGLKRVMETKDDAITNEINDLKRKGAEL--MEENERLKQQMVNAPVERLQL 138

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BLAST of Lsi03G007120 vs. TrEMBL
Match: A0A0A0KIR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499000 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 4   GILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLE 63
           GI+ERHN +HS+NL  L +PS+ELQ    S +   +  +  + + L+QM+GEELQ L +E
Sbjct: 20  GIIERHN-LHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIE 79

Query: 64  ELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           EL++LEKSL+ GL+RV E    R  + I+D+ RK  EL
Sbjct: 80  ELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAEL 116

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BLAST of Lsi03G007120 vs. TrEMBL
Match: A0A023JC23_9ROSI (MADS-box transcription factor (Fragment) OS=Clutia sp. DAV B80.252/F1980.8371 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-11
Identity = 43/97 (44.33%), Postives = 68/97 (70.10%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEE 64
           +LERH  +HS+NL  L +PS+ELQ    S F   S+ +  +++ L+QM+GEELQGL +E+
Sbjct: 48  VLERHK-LHSKNLEKLQQPSLELQLVENSNFSRLSEEVAKKSHQLRQMRGEELQGLNIED 107

Query: 65  LKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           L++LEKSL+ GL+R+ E    +  + I+++ RK T+L
Sbjct: 108 LQQLEKSLESGLSRIIEKKGDKIMKEITELQRKGTQL 143

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BLAST of Lsi03G007120 vs. TrEMBL
Match: A0A059AL85_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00556 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQSY----FQTYSDYLFPQNYILQQMKGEELQGLGLEE 64
           ILERH+S HSENL  L++PS+ELQ      +   S  +  + + L+QM+GEELQGL ++E
Sbjct: 16  ILERHHS-HSENLGKLDQPSLELQLVENGDYSRLSKEVAEKGHQLRQMRGEELQGLNIDE 75

Query: 65  LKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           L++LEKSL+ GLNRV E    +  + I+D+ +K  +L
Sbjct: 76  LQQLEKSLEAGLNRVIEKKGEKIVKEITDLQQKGAKL 111

[Close]

BLAST of Lsi03G007120 vs. TrEMBL
Match: A0A059AKT4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00556 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQSY----FQTYSDYLFPQNYILQQMKGEELQGLGLEE 64
           ILERH+S HSENL  L++PS+ELQ      +   S  +  + + L+QM+GEELQGL ++E
Sbjct: 65  ILERHHS-HSENLGKLDQPSLELQLVENGDYSRLSKEVAEKGHQLRQMRGEELQGLNIDE 124

Query: 65  LKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           L++LEKSL+ GLNRV E    +  + I+D+ +K  +L
Sbjct: 125 LQQLEKSLEAGLNRVIEKKGEKIVKEITDLQQKGAKL 160

[Close]

BLAST of Lsi03G007120 vs. TAIR10
Match: AT2G22540.1 (AT2G22540.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-12
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLEE 64
           +LERHN + S+NL  L++PS+ELQ    S     S  +  +++ L+QM+GEELQGL +EE
Sbjct: 65  VLERHN-LQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEE 124

Query: 65  LKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           L++LEK+L+ GL RV E    +    IS++ +K  +L
Sbjct: 125 LQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQL 160

[Close]

BLAST of Lsi03G007120 vs. NCBI nr
Match: gi|778724526|ref|XP_004136891.2| (PREDICTED: MADS-box protein SVP-like [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.1e-26
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEEL 64
           ILERHNSVHSENLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EEL
Sbjct: 65  ILERHNSVHSENLPNLNEPSVELQLESNIRAKLNEEVEKKSHELRQMKGEELQGLGMEEL 124

Query: 65  KKLEKSLQGGLNRVAEIMDGRNTELISDIGRK 94
           KKLEKSLQGGL+RVAEIMDG+NT+L+SDIGRK
Sbjct: 125 KKLEKSLQGGLSRVAEIMDGKNTDLLSDIGRK 156

[Close]

BLAST of Lsi03G007120 vs. NCBI nr
Match: gi|659110275|ref|XP_008455141.1| (PREDICTED: MADS-box protein JOINTLESS-like isoform X2 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 5.7e-25
Identity = 65/95 (68.42%), Postives = 81/95 (85.26%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEEL 64
           ILERHN+VHS+NLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EEL
Sbjct: 65  ILERHNNVHSDNLPNLNEPSVELQLESNIRAKLNEEVEKKSHELRQMKGEELQGLGMEEL 124

Query: 65  KKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTE 97
           KKLEKSLQGGL+RVAEIMDG+N+EL+S IGRK+ E
Sbjct: 125 KKLEKSLQGGLSRVAEIMDGKNSELLSVIGRKEVE 159

[Close]

BLAST of Lsi03G007120 vs. NCBI nr
Match: gi|659110273|ref|XP_008455140.1| (PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQ---SYFQTYSDYLFPQNYILQQMKGEELQGLGLEEL 64
           ILERHN+VHS+NLPNLNEPSVELQ   +     ++ +  +++ L+QMKGEELQGLG+EEL
Sbjct: 65  ILERHNNVHSDNLPNLNEPSVELQLESNIRAKLNEEVEKKSHELRQMKGEELQGLGMEEL 124

Query: 65  KKLEKSLQGGLNRVAEIMDGRNTELISDIGRK 94
           KKLEKSLQGGL+RVAEIMDG+N+EL+S IGRK
Sbjct: 125 KKLEKSLQGGLSRVAEIMDGKNSELLSVIGRK 156

[Close]

BLAST of Lsi03G007120 vs. NCBI nr
Match: gi|449451385|ref|XP_004143442.1| (PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 4   GILERHNSVHSENLPNLNEPSVELQ----SYFQTYSDYLFPQNYILQQMKGEELQGLGLE 63
           GI+ERHN +HS+NL  L +PS+ELQ    S +   +  +  + + L+QM+GEELQ L +E
Sbjct: 64  GIIERHN-LHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIE 123

Query: 64  ELKKLEKSLQGGLNRVAEIMDGRNTELISDIGRKDTEL 98
           EL++LEKSL+ GL+RV E    R  + I+D+ RK  EL
Sbjct: 124 ELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAEL 160

[Close]

BLAST of Lsi03G007120 vs. NCBI nr
Match: gi|223538130|gb|EEF39741.1| (MADS-box transcription factor, putative [Ricinus communis])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-11
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1


Query: 5   ILERHNSVHSENLPNLNEPSVELQSYFQT-YSDYLFPQNYILQQMKGEELQGLGLEELKK 64
           ++ERHN +H  NL  L++PS+ELQ    T  S  +  +   L+QM+GEELQGL +EEL++
Sbjct: 25  VIERHN-LHPRNLGRLDQPSLELQLENCTALSKEVAEKTQELRQMRGEELQGLSMEELQQ 84

Query: 65  LEKSLQGGLNRVAEIMDGRNTELISDIGRKDTELNPIEPIIPLTEPSIHLPIHPFRI 121
           LEKSL+GGL RV E  D   T  I+D+ RK  EL  +E    L +  ++ P+   ++
Sbjct: 85  LEKSLEGGLKRVMETKDDAITNEINDLKRKGAEL--MEENERLKQQMVNAPVERLQL 138

The following BLAST results are available for this feature:

BLAST of Lsi03G007120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SVP_ARATH	7.9e-11	43.30	MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1	[more]
JOIN_SOLLC	5.1e-10	42.27	MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1	[more]
MAD22_ORYSJ	1.9e-09	38.54	MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 ...	[more]

BLAST of Lsi03G007120 vs. TrEMBL


Match Name	E-value	Identity	Description
B9S9I5_RICCO	3.2e-11	42.74	MADS-box transcription factor, putative OS=Ricinus communis GN=RCOM_0885930 PE=4...	[more]
A0A0A0KIR9_CUCSA	3.2e-11	46.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499000 PE=4 SV=1	[more]
A0A023JC23_9ROSI	5.5e-11	44.33	MADS-box transcription factor (Fragment) OS=Clutia sp. DAV B80.252/F1980.8371 PE...	[more]
A0A059AL85_EUCGR	1.2e-10	46.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00556 PE=4 SV=1	[more]
A0A059AKT4_EUCGR	1.2e-10	46.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00556 PE=4 SV=1	[more]

BLAST of Lsi03G007120 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G22540.1	4.5e-12	43.30	K-box region and MADS-box transcription factor family protein	[more]

BLAST of Lsi03G007120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724526\|ref\|XP_004136891.2\|	5.1e-26	72.83	PREDICTED: MADS-box protein SVP-like [Cucumis sativus]	[more]
gi\|659110275\|ref\|XP_008455141.1\|	5.7e-25	68.42	PREDICTED: MADS-box protein JOINTLESS-like isoform X2 [Cucumis melo]	[more]
gi\|659110273\|ref\|XP_008455140.1\|	3.7e-24	69.57	PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis melo]	[more]
gi\|449451385\|ref\|XP_004143442.1\|	4.6e-11	46.94	PREDICTED: MADS-box protein SVP-like isoform X1 [Cucumis sativus]	[more]
gi\|223538130\|gb\|EEF39741.1\|	4.6e-11	42.74	MADS-box transcription factor, putative [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002487	TF_Kbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G007120.1	Lsi03G007120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 46..97 score: 4.
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 5..97 score: 8.1
None	No IPR available	PANTHER	PTHR11945:SF179	MADS-BOX PROTEIN SVP	coord: 5..97 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G007120	CSPI07G05940	Wild cucumber (PI 183967)	cpilsiB531
Lsi03G007120	ClCG09G016000	Watermelon (Charleston Gray)	lsiwcgB215
Lsi03G007120	Carg22814	Silver-seed gourd	carlsiB262
Lsi03G007120	CsaV3_7G006940	Cucumber (Chinese Long) v3	cuclsiB555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G007120	Cucumber (Gy14) v1	cgylsiB363
Lsi03G007120	Cucumber (Gy14) v1	cgylsiB367
Lsi03G007120	Cucurbita maxima (Rimu)	cmalsiB117
Lsi03G007120	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G007120	Cucurbita moschata (Rifu)	cmolsiB104
Lsi03G007120	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G007120	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G007120	Cucurbita pepo (Zucchini)	cpelsiB544
Lsi03G007120	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G007120	Cucumber (Chinese Long) v2	culsiB517
Lsi03G007120	Cucumber (Chinese Long) v2	culsiB522
Lsi03G007120	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G007120	Melon (DHL92) v3.5.1	lsimeB250
Lsi03G007120	Watermelon (97103) v1	lsiwmB233
Lsi03G007120	Cucumber (Gy14) v2	cgyblsiB484
Lsi03G007120	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G007120	Melon (DHL92) v3.6.1	lsimedB263
Lsi03G007120	Cucumber (Chinese Long) v3	cuclsiB551
Lsi03G007120	Watermelon (97103) v2	lsiwmbB251
Lsi03G007120	Wax gourd	lsiwgoB318
Lsi03G007120	Wax gourd	lsiwgoB320