Lsi03G007100 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G007100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	11S seed storage protein
Location	chr03 : 9357101 .. 9357614 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTTGAACTGTGAGGAGGCGCCGCTAGATGTGGACGTGAAGAATGGAGGACGAGTTGTGGTTTTGAACATGAAGAATCTCTCTCTGGTAGGAGAGGTAGGATTGGGAGCCGATCTGGTCCGATTGGATGGAAGTGCGATGTGTTCGCCTGGATTCTCGTGCGATTCAGCATTGCAGGTAGGTCACATACATCGTGAAAGGAAGTGGAAGAGTAGAGATTGTAGGAATAGATGGGAAGAAGGTTCTAGAAACGAGAGTGAAAGCTGTTGGAAATCTGTTTATTGTACCAAGGTTCTTTGTGGTATCGAAGATAGGAGATCCTGAAGGAATGGAGTGGTTCTCTATTATCACCACTCCTAATCCTGTTTTCACTCATTTGGCTGGCAGCATCGATGTCTGGAAAGCTCTGTCGCCTGAAGTTATTCAAGCAGCCTTCAATGTTGATGCTGATTTGGTCAAGAACTTCTCTTCAAAGAGGGCTTCTGATGCCATCTTCTTCCCTCCAAATTAA

mRNA sequence

ATGACGTTGAACTGTGAGGAGGCGCCGCTAGATGTGGACGTGAAGAATGGAGGACGAGTTGTGGTTTTGAACATGAAGAATCTCTCTCTGGTAGGAGAGGTAGGATTGGGAGCCGATCTGGTCCGATTGGATGGAAGTGCGATGTGTTCGCCTGGATTCTCGTGCGATTCAGCATTGCAGGTAGGTCACATACATCGTGAAAGGAAGTGGAAGAGTAGAGATTGTAGGAATAGATGGGAAGAAGGAGATCCTGAAGGAATGGAGTGGTTCTCTATTATCACCACTCCTAATCCTGTTTTCACTCATTTGGCTGGCAGCATCGATGTCTGGAAAGCTCTGTCGCCTGAAGTTATTCAAGCAGCCTTCAATGTTGATGCTGATTTGGTCAAGAACTTCTCTTCAAAGAGGGCTTCTGATGCCATCTTCTTCCCTCCAAATTAA

Coding sequence (CDS)

ATGACGTTGAACTGTGAGGAGGCGCCGCTAGATGTGGACGTGAAGAATGGAGGACGAGTTGTGGTTTTGAACATGAAGAATCTCTCTCTGGTAGGAGAGGTAGGATTGGGAGCCGATCTGGTCCGATTGGATGGAAGTGCGATGTGTTCGCCTGGATTCTCGTGCGATTCAGCATTGCAGGTAGGTCACATACATCGTGAAAGGAAGTGGAAGAGTAGAGATTGTAGGAATAGATGGGAAGAAGGAGATCCTGAAGGAATGGAGTGGTTCTCTATTATCACCACTCCTAATCCTGTTTTCACTCATTTGGCTGGCAGCATCGATGTCTGGAAAGCTCTGTCGCCTGAAGTTATTCAAGCAGCCTTCAATGTTGATGCTGATTTGGTCAAGAACTTCTCTTCAAAGAGGGCTTCTGATGCCATCTTCTTCCCTCCAAATTAA

Protein sequence

MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQVGHIHRERKWKSRDCRNRWEEGDPEGMEWFSIITTPNPVFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPN

Homology

[Close]

BLAST of Lsi03G007100 vs. TrEMBL
Match: A0A0A0K666_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G281380 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-55
Identity = 120/168 (71.43%), Postives = 129/168 (76.79%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           M LNCEEAPLDVDVKNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 188 MALNCEEAPLDVDVKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 247

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I +     +    D +   E                    GDPEGMEWFSII+TPNP
Sbjct: 248 VTYIVKGSGRAEVVGVDGKKVLETRVKAGNLFIVPRFFVVSKIGDPEGMEWFSIISTPNP 307

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPN 147
           VFTHLAGSI VWKALSPEVI+AAFNV+ADLVKNFSSKR+SDAIFFPP+
Sbjct: 308 VFTHLAGSIGVWKALSPEVIEAAFNVEADLVKNFSSKRSSDAIFFPPS 355

[Close]

BLAST of Lsi03G007100 vs. TrEMBL
Match: M5WIK4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007808mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-51
Identity = 112/167 (67.07%), Postives = 122/167 (73.05%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           MTLNCEEAPLDVD+KNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 187 MTLNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 246

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I R     +    D +   E                     DP+G+EWFSIITTPNP
Sbjct: 247 VTYIVRGSGRVQVVGVDGKRVLETTIKAGNLFIVPRYFVVSKIADPDGLEWFSIITTPNP 306

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPP 146
           +FTHLAGSI  WKALSP+V+QAAFNVDAD  K F SKR +DAIFFPP
Sbjct: 307 IFTHLAGSIGCWKALSPQVLQAAFNVDADTEKLFRSKRTADAIFFPP 353

[Close]

BLAST of Lsi03G007100 vs. TrEMBL
Match: M5VZT7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007808mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-51
Identity = 112/167 (67.07%), Postives = 122/167 (73.05%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           MTLNCEEAPLDVD+KNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 157 MTLNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 216

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I R     +    D +   E                     DP+G+EWFSIITTPNP
Sbjct: 217 VTYIVRGSGRVQVVGVDGKRVLETTIKAGNLFIVPRYFVVSKIADPDGLEWFSIITTPNP 276

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPP 146
           +FTHLAGSI  WKALSP+V+QAAFNVDAD  K F SKR +DAIFFPP
Sbjct: 277 IFTHLAGSIGCWKALSPQVLQAAFNVDADTEKLFRSKRTADAIFFPP 323

[Close]

BLAST of Lsi03G007100 vs. TrEMBL
Match: A0A0J8BZZ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g159780 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.0e-51
Identity = 111/168 (66.07%), Postives = 118/168 (70.24%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           M LNCEEAPLDVD+KNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 191 MVLNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 250

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I R     +    D R   E                     DP GMEWFSIITTPNP
Sbjct: 251 VTYIVRGSGRVQVVGIDGRRMLETTVKAGQLFIVPRFCVVSKIADPSGMEWFSIITTPNP 310

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPN 147
           +FTHLAG    WKALSPEV+QAAFNV AD+   F SKR SDAIFFPP+
Sbjct: 311 IFTHLAGKTSAWKALSPEVLQAAFNVSADIENKFRSKRTSDAIFFPPS 358

[Close]

BLAST of Lsi03G007100 vs. TrEMBL
Match: A0A022QA16_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022874mg PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.6e-50
Identity = 109/167 (65.27%), Postives = 124/167 (74.25%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           M LNCEEAPLDVD+KNGG+VVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 87  MALNCEEAPLDVDIKNGGKVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 146

Query: 61  VGHIHR----------------ERKWKSRD--CRNRW----EEGDPEGMEWFSIITTPNP 120
           V +I R                E + K+ D     R+    +  DPEGM+WFSIITTPNP
Sbjct: 147 VTYIVRGSGRVQVVGVDGKRVLETRLKAGDLFIVPRFFVVSKIADPEGMDWFSIITTPNP 206

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPP 146
           +FTHLAG   VWKALSPEV+QAAFNV AD+ + F+SKR ++ IFFPP
Sbjct: 207 IFTHLAGRTSVWKALSPEVLQAAFNVPADVEEKFTSKRKAEEIFFPP 253

[Close]

BLAST of Lsi03G007100 vs. TAIR10
Match: AT2G28680.1 (AT2G28680.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 181.4 bits (459), Expect = 4.0e-46
Identity = 96/166 (57.83%), Postives = 111/166 (66.87%), Query Frame = 1


Query: 3   LNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQV- 62
           LNC EAPLDVD+K+GGRVVVLN KNL LVGEVG GADLVR+DG +MCSPGFSCDSALQV 
Sbjct: 190 LNCLEAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDGHSMCSPGFSCDSALQVT 249

Query: 63  ------GHIHRERKWKSRDCRNRWEEG---------------DPEGMEWFSIITTPNPVF 122
                 G +        R      + G               D +G+ WFSI+TTP+P+F
Sbjct: 250 YIVGGSGRVQIVGADGKRVLETHVKAGVLFIVPRFFVVSKIADSDGLSWFSIVTTPDPIF 309

Query: 123 THLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPN 147
           THLAG   VWKALSPEV+QAAF VD ++ K F SKR SDAIFF P+
Sbjct: 310 THLAGRTSVWKALSPEVLQAAFKVDPEVEKAFRSKRTSDAIFFSPS 355

[Close]

BLAST of Lsi03G007100 vs. TAIR10
Match: AT1G07750.1 (AT1G07750.1 RmlC-like cupins superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 3   LNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQVG 62
           LNC EAPLDVD+K+GGRVVVLN KNL LVGEVG GADLVR+D  +MCSPGFSCDSALQV 
Sbjct: 190 LNCLEAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDAHSMCSPGFSCDSALQVT 249

Query: 63  HI 65
           +I
Sbjct: 250 YI 251

[Close]

BLAST of Lsi03G007100 vs. NCBI nr
Match: gi|659123123|ref|XP_008461502.1| (PREDICTED: glutelin type-A 1-like [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 6.8e-56
Identity = 121/168 (72.02%), Postives = 129/168 (76.79%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           M LNCEEAPLDVDVKNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 188 MALNCEEAPLDVDVKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 247

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I +     +    D +   E                    GDPEGMEWFSII+TPNP
Sbjct: 248 VTYIVKGSGRAEVVGVDGKKVLETRVKAGNLFIVPRFFVVSKIGDPEGMEWFSIISTPNP 307

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPN 147
           VFTHLAGSI VWKALSPEVIQAAFNV+ADLVKNFSSKR+SDAIFFPP+
Sbjct: 308 VFTHLAGSIGVWKALSPEVIQAAFNVEADLVKNFSSKRSSDAIFFPPS 355

[Close]

BLAST of Lsi03G007100 vs. NCBI nr
Match: gi|449465356|ref|XP_004150394.1| (PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 120/168 (71.43%), Postives = 129/168 (76.79%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           M LNCEEAPLDVDVKNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 188 MALNCEEAPLDVDVKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 247

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I +     +    D +   E                    GDPEGMEWFSII+TPNP
Sbjct: 248 VTYIVKGSGRAEVVGVDGKKVLETRVKAGNLFIVPRFFVVSKIGDPEGMEWFSIISTPNP 307

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPN 147
           VFTHLAGSI VWKALSPEVI+AAFNV+ADLVKNFSSKR+SDAIFFPP+
Sbjct: 308 VFTHLAGSIGVWKALSPEVIEAAFNVEADLVKNFSSKRSSDAIFFPPS 355

[Close]

BLAST of Lsi03G007100 vs. NCBI nr
Match: gi|778726347|ref|XP_011659088.1| (PREDICTED: 11S globulin seed storage protein 2-like isoform X2 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 120/168 (71.43%), Postives = 129/168 (76.79%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           M LNCEEAPLDVDVKNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 188 MALNCEEAPLDVDVKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 247

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I +     +    D +   E                    GDPEGMEWFSII+TPNP
Sbjct: 248 VTYIVKGSGRAEVVGVDGKKVLETRVKAGNLFIVPRFFVVSKIGDPEGMEWFSIISTPNP 307

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPPN 147
           VFTHLAGSI VWKALSPEVI+AAFNV+ADLVKNFSSKR+SDAIFFPP+
Sbjct: 308 VFTHLAGSIGVWKALSPEVIEAAFNVEADLVKNFSSKRSSDAIFFPPS 355

[Close]

BLAST of Lsi03G007100 vs. NCBI nr
Match: gi|595825640|ref|XP_007205437.1| (hypothetical protein PRUPE_ppa007808mg [Prunus persica])

HSP 1 Score: 209.9 bits (533), Expect = 3.0e-51
Identity = 112/167 (67.07%), Postives = 122/167 (73.05%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           MTLNCEEAPLDVD+KNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 157 MTLNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 216

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I R     +    D +   E                     DP+G+EWFSIITTPNP
Sbjct: 217 VTYIVRGSGRVQVVGVDGKRVLETTIKAGNLFIVPRYFVVSKIADPDGLEWFSIITTPNP 276

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPP 146
           +FTHLAGSI  WKALSP+V+QAAFNVDAD  K F SKR +DAIFFPP
Sbjct: 277 IFTHLAGSIGCWKALSPQVLQAAFNVDADTEKLFRSKRTADAIFFPP 323

[Close]

BLAST of Lsi03G007100 vs. NCBI nr
Match: gi|595825635|ref|XP_007205436.1| (hypothetical protein PRUPE_ppa007808mg [Prunus persica])

HSP 1 Score: 209.9 bits (533), Expect = 3.0e-51
Identity = 112/167 (67.07%), Postives = 122/167 (73.05%), Query Frame = 1


Query: 1   MTLNCEEAPLDVDVKNGGRVVVLNMKNLSLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 60
           MTLNCEEAPLDVD+KNGGRVVVLN KNL LVGEVGLGADLVRLDGSAMCSPGFSCDSALQ
Sbjct: 187 MTLNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQ 246

Query: 61  VGHIHR---ERKWKSRDCRNRWEE-------------------GDPEGMEWFSIITTPNP 120
           V +I R     +    D +   E                     DP+G+EWFSIITTPNP
Sbjct: 247 VTYIVRGSGRVQVVGVDGKRVLETTIKAGNLFIVPRYFVVSKIADPDGLEWFSIITTPNP 306

Query: 121 VFTHLAGSIDVWKALSPEVIQAAFNVDADLVKNFSSKRASDAIFFPP 146
           +FTHLAGSI  WKALSP+V+QAAFNVDAD  K F SKR +DAIFFPP
Sbjct: 307 IFTHLAGSIGCWKALSPQVLQAAFNVDADTEKLFRSKRTADAIFFPP 353

The following BLAST results are available for this feature:

BLAST of Lsi03G007100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G007100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K666_CUCSA	1.1e-55	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G281380 PE=4 SV=1	[more]
M5WIK4_PRUPE	2.1e-51	67.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007808mg PE=4 SV=1	[more]
M5VZT7_PRUPE	2.1e-51	67.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007808mg PE=4 SV=1	[more]
A0A0J8BZZ9_BETVU	6.0e-51	66.07	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g159780 PE=4 S...	[more]
A0A022QA16_ERYGU	6.6e-50	65.27	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022874mg PE=4 SV=1	[more]

BLAST of Lsi03G007100 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28680.1	4.0e-46	57.83	RmlC-like cupins superfamily protein	[more]
AT1G07750.1	3.6e-23	80.65	RmlC-like cupins superfamily protein	[more]

BLAST of Lsi03G007100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123123\|ref\|XP_008461502.1\|	6.8e-56	72.02	PREDICTED: glutelin type-A 1-like [Cucumis melo]	[more]
gi\|449465356\|ref\|XP_004150394.1\|	1.5e-55	71.43	PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus]	[more]
gi\|778726347\|ref\|XP_011659088.1\|	1.5e-55	71.43	PREDICTED: 11S globulin seed storage protein 2-like isoform X2 [Cucumis sativus]	[more]
gi\|595825640\|ref\|XP_007205437.1\|	3.0e-51	67.07	hypothetical protein PRUPE_ppa007808mg [Prunus persica]	[more]
gi\|595825635\|ref\|XP_007205436.1\|	3.0e-51	67.07	hypothetical protein PRUPE_ppa007808mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014710	RmlC-like_jellyroll
IPR011051	RmlC_Cupin_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G007100.1	Lsi03G007100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011051	RmlC-like cupin domain	unknown	SSF51182	RmlC-like cupins	coord: 9..140 score: 7.74
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 83..145 score: 5.3
None	No IPR available	PANTHER	PTHR31189	FAMILY NOT NAMED	coord: 1..146 score: 2.5
None	No IPR available	PANTHER	PTHR31189:SF8	CUPIN FAMILY PROTEIN	coord: 1..146 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G007100	Watermelon (97103) v2	lsiwmbB251
Lsi03G007100	Wax gourd	lsiwgoB318
Lsi03G007100	Wax gourd	lsiwgoB320
Lsi03G007100	Cucumber (Gy14) v1	cgylsiB363
Lsi03G007100	Cucumber (Gy14) v1	cgylsiB367
Lsi03G007100	Cucurbita maxima (Rimu)	cmalsiB117
Lsi03G007100	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G007100	Cucurbita moschata (Rifu)	cmolsiB104
Lsi03G007100	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G007100	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G007100	Cucurbita pepo (Zucchini)	cpelsiB544
Lsi03G007100	Wild cucumber (PI 183967)	cpilsiB531
Lsi03G007100	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G007100	Cucumber (Chinese Long) v2	culsiB517
Lsi03G007100	Cucumber (Chinese Long) v2	culsiB522
Lsi03G007100	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G007100	Melon (DHL92) v3.5.1	lsimeB250
Lsi03G007100	Watermelon (Charleston Gray)	lsiwcgB215
Lsi03G007100	Watermelon (97103) v1	lsiwmB233
Lsi03G007100	Cucumber (Gy14) v2	cgyblsiB484
Lsi03G007100	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G007100	Melon (DHL92) v3.6.1	lsimedB263
Lsi03G007100	Silver-seed gourd	carlsiB262
Lsi03G007100	Cucumber (Chinese Long) v3	cuclsiB551
Lsi03G007100	Cucumber (Chinese Long) v3	cuclsiB555