Lsi03G006880 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G006880
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA-directed DNA polymerase, putative
Locationchr03 : 8833200 .. 8838371 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTATAGGGCAATACCTTGAGCGTTTTGGCTGCTACAATTAGATTTTAGAGTCATAGTTTTCTAAGGACATGCATTTCATCATCTTTACTTTTGTAGGATCTCGCATTAAGATGAATCCTGGAGTTTGTCATTTGGCATTCATTTGATTTTAATGAAAATGAAAGTTTGTTTTTCTTTCTGTTCTCTAGCTTTCTCTCTCTCTCTTTGGCAAATTAAATTATTATTTTCTTCTCTTGCACAAGAGACAAAAAGTTTTAAGCTTATAAAATAGCTTGAGGTTCACCTCCTCGCCATCCTTACTGGACGAGAAGAAATGCTAGAATAATGGATGAGCAATCTAACGATCAAGTTCAGCAGCCCGTCAGGATGTGGATGAGCTAAAAGAACAGTTAACAAAGATCCTAGAATTACTCACCGCGGGAAAAGGAAAGAATGTTGCAGGAACTTCAACACAAGTGGAAACTAGTTTAAATCAGACATTAGACGACATGCCTGTATACCCTCATGGTTTTACTCTCTAAAGGATGTCTAGTCCACACTTGGTAGGTGTGACATACCCTACTTCATTTCCTGCACACGAGTCTAATCAAACCTCGCAGTAGACAACTCGCATCGGTGATTCGGTATACACCCTAGTTATGGAGGGTGAAAAAAAGGTTTTAGAGGATTAGGGTAGCAGAAGAAGACTAGAGTTTCTAGAAGAAAGATTACGGGCAATTGAAGGTGCAGATATGTACCAGAACGTTGACGCAACACAGTTATGTTTGATTTTGATCCCTCCCAAATTTAAGACTTCAGATTTTTAAAAGTATAGCTGAACCACGTGCCCAAAAAACCACTTGGTTATGTATTTTCAAAAGATGTCAGCTTATGCTCATGATGACAAGTTATTGATTCGTTGATTTCAAGATAGTTTAGTTGGTCCGACCTCTCGTTGGTACATGCATTTGGATGGTTCACAAGTACACAAATGGAATGATCTCGCCGATTCCTTCCTAAAGCAGTATAAATACAATATTGATATGGCACCAGATCGTTTGGATCTTCAGAGATTGAAGAAGAAAAGTGTTGAAAGTTTTAAGGAGCACGCGCAACATTAAAGAGAAATGGCCGCACAAGTGTAGCCTCCGCTGACAAACAAAGAATTGATAGCTATATTCATAAATACTCTTAGCGCCCCATACTATGATAGGATGATTAGGAGTGCTTCGACTAATTTCTTGGACATAATAACATTGGGGAAATGATCGAATTCAGAGTAAAGAATGGAATGATTACGGATTTTGCTTCAAAATCAAGGAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTACACAAGTTGAGCTCGACTCAAAGAGTAGTTGCACATGTGCCCTCACCAATCATTGGGCAAGCAAATTACTATGTTAATAATCAGAATAGAGATCAAAATCCTTTCGATCAGTCAAATTAGAGAAATGTAAGGAATAATTGGAAACAAACCCATTTTGACCTCATACCCATGTCGTATACTGAACTCTTGCCTCAACTATTAAAGAATCATCAAGTAGCCATTGTACCTCAAGAGCCTCTACAGCCACCGTATCCCAAGTGGTACGACCCGAGCGCAAGATGTGAATATCATGTTGGGCAGTTGGGCACTCTACTGAGAATTGTTTTCCTCTGAAGGCTAAGGTGCAAAGTTTGGTCAAGGTTGGATGACTAAAATTCAAGAAAACAGAGGAAGAGTCGGATGTTAACCGAAACCCTCTCCCAAATCACGAAGAGCCTGTTGTAAGTGATGTTGATACATTAGTAGAACGTTGCAAGGATAAAGTACATCACTTGACTACTTCGATGAGAGTTCTTTTTCAAATTCTTTATGAGGCTGGGTATCTATCACCAAGAGTTGACAGTAATGGGGGAAATGGGATAGGATACACTGTTGAGAAAGGATGTTTATTCCACCCTGAGGTAGATGGCCATTCCATAGAAGATTGTGTTGAGTTTAAGAGGGAAGTACAAAATTGATGGAGGCAAAGATTCTAATGGTAAAGTTAGACAGACTCCCAGGAAATCAAGGTTGATATGATTTCCAATGCCTTGTCTAATGAAAAAACCTCAAAGGAGGAATCATCTATACGAGAACCATTAATTATTCATTATGAAGAAAAATCCAATGTCACTTCTTGTATCCAGATGCCGAAGACAATGATTGTGAAGATACCAGGTCCCTTTGCTTATAAGGATAATCAAGTTGTACCATGGAAATATGAATGTCAGTTCATCACAAAGAGTGTTGGTGAAGGGTGACTCGTAGTGGAAGATTTTAGACACCAGATAACTTAAAGAATGTTCCGAAAGAGGATGAAGTTCGACAACGTAAGGGTAAAGTTATGGAAATAACAAGTGGGGATGATCTAAATGATTTGAGCAAAGTCTTTGCTGAAAATGCCACTCTAGTAAGAAGGAAGACAGACAACGAGTTCGTTTTCGAGGAAGAAGCTCGTGAGTTTTTGAAGTTGATAAAGCAGAGTGAGTATTAAGTGATTGAGCAATTACATCATATCCCAACTCATATATCAATTTTGTCATTATTCTTGCATTTTGAACCACACCGCAAGGTTTTGCTGAACATCTTAAATCAAGCACATGTAGGTCAAGATATTTTAGTAAATGCCCTTAGCGAAATTGTGGAAAATAAAACTGCCACAAACTGCATCTCATTTACAGATAAAGAAACCCTTCTTGAAGGTATTGGGCATACAAAGGCATTACACATATTTGTGAAATGTAAAAACTACCATGTGGTTAGGGTTCTTGTTGATAATGGGTCATCTCTAAACGAGATCTACTTTGATGAAACTCCCTATAGATCTCTTCTACTTAAAGTCAAGTACCATGGTAGTCAGAGCTTTCGACGACGCTCGTAGGGAGGTAATTGGAGATATAAAGATTCCATTTAAAATTGGACCATCTACCTTCAACGTACCATTTCAAGTATTGGATGTAAACTCTTCGTATAGTTGTTTGTTTGGACGACCTTGGATTCATTCAGCTAGGTCAGTCTCGTCTTCACTACATGAGAGGGTAAAGTTTAATGTGGAAGATGATTAGGCCATTGTCTATGGGGAGGAGGACATGTCTATGGGGAGGAGCACTTCCTTATGTTGAAGCAGCCAAGGAAGCTTTTGAGTGCTCATACAGATCGTTTGAGGTCGCCAATGCTACTATCTTTCCAACTGAAGGTTTAGATCTAGATCGCTATATGTCAAGAACTTCTCTAATGATTGCAAAGACGATAATAAGAAGTGATTTTCAAATGAACATAGGATTGGGGAAGAATAATCAAGGAAACAAAGAGTTGATCTCTCTTTCTAAAGCTAAAAAGAGGTTAGAATTGGGATATAAGCCGATGGCTTTTGAGTAGGAGAAAGTCCAGGCTGAGAAGAAGGAAAAGAGAAGTGCAGGTCTCGAAGGACGTGAATTTGAGCAAAGAAAACTGAATATACCTCACCTATATGAAACTTTCAAGTCGGGAGAAATGCTTTTCAACAACAACCAGTCAAGGGAATGCAAGAAAAGTATTGAAGCCTCGATCACTGTTATCTTAGAGAGCACTCCTTTGGCCCGCCAATTGGTTTATCCTTGCCTACCAGAGTTTGTGTTGGGCAATTAGGAGATAAAAAAGATACCAAAAGTTATAAAAGGATTACCAAAGTAATGACACACCCTTTGGCTATGCCTAAGGCCACAGAGGTATCTTTGTAATAAGGGCATCCTTTAATGCTTTTGTCTTAAGAAATTATATTTCTCTTTTATCTTAAGAAATTGTATTTCTTTTAATATCTAGTAGCTACGTGTACCCTTTTTTTTTTTAGAAATGAAAAGAGATGATTAAAAATTTCTTTTTGTCCCAATCACTATGTCTATTCCTTTTGCTTCGAAGCATGATATTATATTTCGCTTCTTTTCGCCTCCTCTACCTCTTACTAATATAATTTAGGGTTCATAACAGGGATGTTGGAGACGAAAACATCAATTTAATTGTTGATCTTGAAGTTCTGATCTATAATCTCGAACAAAATGTGGAGGACAAATGCGATGTATCATCCGAGTTACTCAAGATGAGAGAGCAAGAGGAAAAGAAGACGGTACCATATCAAGAACCTTTAGAAGTTATTAATTTGGGGACACTAGAAGAGGTGAAAGAAGTGCAAATTGGCACTTTGGCCTCGAAGCAAGATCGTACAAATCTTATGGCTTTGCTTTAGGAATATAAAGAAATATTTGCATAGTCCTACCACGATATGCCTGGTTTAGATATAGAGATCGCGATGCATCGATTGCCATAAAGCTTGAATGTAGGCCCATACGACAAAAACTTCGCAAAATGAAGCCTGAAATGCTAATCAAGATTAAGGAGAAGTTTAAAAAACAATGCGATGCAAGATTCTTAGCAGCTAAATACCCAAAGTGGGTTGCAAATATTGTCCCGGTTCCAAAGAAAGATGAAAAGGTCAGAATGTGTGTTAACTACAAAGATCTAAATCGTGCCAGTCCAAAGGACAATTTTTCCCTTCCTCACATTGACGTGTTAGTAGATAATACTGCTGGATATTCTACATTCTCATTTATGAATGGATTCTCAGGATACAACCAAATCAAGATGGTCCTGAAAGATCAATAAAAGAAAACATTCATTACTTTATGGGGGATTTTTTGCTATAAAGTTATGCCTTTTGGTTTAAAAAATGCAGGAGCAACTTACTAGAGTGAGATATGAAGCCACCGAAGACCCGAAAGGAGGTTAGAAGTTTCTTGAGGAGGTTAAATTACATTGCATGATTTATTTCACACTTTACTCAAACCTGCAAGCCAATTCTAAGACTCCTTCGCATGAGTGAGATATGTCGCTGGAACGATGATTGCCAAAGGGCTTTTAATAAAATCAAAGATTATTTGCAAAGCCCCCGATACTTGTCCCACCAACTTCAAGACGACCATTAATCTTATACCTGATAGTAAAGGAAAGGTCAATGGGATGTGTGCTGGGCAACATGACTCTATAGGAAGGAAAGAGCGAGTTGTTTATTATTTGAGCAAGAAGTTCATAAGTTATGAGTCAAAGTACTCGTTGTTGGAAAAAACATGTGGTGCCTTAGCATGGAGAGCTCAAAGATGA

mRNA sequence

ATGGGATCTCGCATTAAGATGAATCCTGGAAGTAAAGAATGGAATGATTACGGATTTTGCTTCAAAATCAAGGAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTACACAAGTTGAGCTCGACTCAAAGAAACGTTGCAAGGATAAAGTACATCACTTGACTACTTCGATGAGAGTTCTTTTTCAAATTCTTTATGAGGCTGGGTATCTATCACCAAGAGTTGACAGTAATGGGGGAAATGGGATAGGATACACTGTTGAGAAAGGATGTTTATTCCACCCTGAGGTAGATGGCCATTCCATAGAAGATTGTGTTGAGTTTAAGAGGGAAACAGACTCCCAGGAAATCAAGGTTGATATGATTTCCAATGCCTTGTCTAATGAAAAAACCTCAAAGGAGGAATCATCTATACGAGAACCATTAATTATTCATTATGAAGAAAAATCCAATGTCACTTCTTGTATCCAGATGCCGAAGACAATGATTGTGAAGATACCAGGTCCCTTTGCTTATAAGGATAATCAAGTTGTACCATGGAAATATGAATGTCAGTTCATCACAAAGAGTACACCAGATAACTTAAAGAATGTTCCGAAAGAGGATGAAGTTCGACAACGTAAGGGTAAAGTTATGGAAATAACAAGTGGGGATGATCTAAATGATTTGAGCAAAGTCTTTGCTGAAAATGCCACTCTAGTAAGAAGGAAGACAGACAACGAGTTCGTTTTCGAGGAAGAAGCTCGTGAGTTTTTGAAGTTGATAAAGCAGAATCTCTTCTACTTAAAGTCAAGTACCATGGTAGTCAGAGCTTTCGACGACGCTCGTAGGGAGGTAATTGGAGATATAAAGATTCCATTTAAAATTGGACCATCTACCTTCAACGTACCATTTCAAGTATTGGATGTAAACTCTTCGTATAGTTGTTTGTTTGGACGACCTTGGATTCATTCAGCTAGGTCAGTCTCGTCTTCACTACATGAGAGGATGATTAGGCCATTGTCTATGGGGAGGAGGACATGTCTATGGGGAGGAGCACTTCCTTATGTTGAAGCAGCCAAGGAAGCTTTTGAGTGCTCATACAGATCGTTTGAGGTCGCCAATGCTACTATCTTTCCAACTGAAGGTTTAGATCTAGATCGCTATATGTCAAGAACTTCTCTAATGATTGCAAAGACGATAATAAGAAGTGATTTTCAAATGAACATAGGATTGGGGAAGAATAATCAAGGAAACAAAGAGTTGATCTCTCTTTCTAAAGCTAAAAAGAGGTTAGAATTGGGATATAAGCCGATGGCTTTTGAGGATGTTGGAGACGAAAACATCAATTTAATTGTTGATCTTGAAGTTCTGATCTATAATCTCGAACAAAATGTGGAGGACAAATGCGATGTATCATCCGAGTTACTCAAGATGAGAGAGCAAGAGGAAAAGAAGACGATTATTTGCAAAGCCCCCGATACTTGTCCCACCAACTTCAAGACGACCATTAATCTTATACCTGATAGTAAAGGAAAGGTCAATGGGATGTGTGCTGGGCAACATGACTCTATAGGAAGGAAAGAGCGAGTTGTTTATTATTTGAGCAAGAAGTTCATAAGTTATGAGTCAAAGTACTCGTTGTTGGAAAAAACATGTGGTGCCTTAGCATGGAGAGCTCAAAGATGA

Coding sequence (CDS)

ATGGGATCTCGCATTAAGATGAATCCTGGAAGTAAAGAATGGAATGATTACGGATTTTGCTTCAAAATCAAGGAAAATGATGACCCCAAAGAAAAAGGAGGGAGAAGTACACAAGTTGAGCTCGACTCAAAGAAACGTTGCAAGGATAAAGTACATCACTTGACTACTTCGATGAGAGTTCTTTTTCAAATTCTTTATGAGGCTGGGTATCTATCACCAAGAGTTGACAGTAATGGGGGAAATGGGATAGGATACACTGTTGAGAAAGGATGTTTATTCCACCCTGAGGTAGATGGCCATTCCATAGAAGATTGTGTTGAGTTTAAGAGGGAAACAGACTCCCAGGAAATCAAGGTTGATATGATTTCCAATGCCTTGTCTAATGAAAAAACCTCAAAGGAGGAATCATCTATACGAGAACCATTAATTATTCATTATGAAGAAAAATCCAATGTCACTTCTTGTATCCAGATGCCGAAGACAATGATTGTGAAGATACCAGGTCCCTTTGCTTATAAGGATAATCAAGTTGTACCATGGAAATATGAATGTCAGTTCATCACAAAGAGTACACCAGATAACTTAAAGAATGTTCCGAAAGAGGATGAAGTTCGACAACGTAAGGGTAAAGTTATGGAAATAACAAGTGGGGATGATCTAAATGATTTGAGCAAAGTCTTTGCTGAAAATGCCACTCTAGTAAGAAGGAAGACAGACAACGAGTTCGTTTTCGAGGAAGAAGCTCGTGAGTTTTTGAAGTTGATAAAGCAGAATCTCTTCTACTTAAAGTCAAGTACCATGGTAGTCAGAGCTTTCGACGACGCTCGTAGGGAGGTAATTGGAGATATAAAGATTCCATTTAAAATTGGACCATCTACCTTCAACGTACCATTTCAAGTATTGGATGTAAACTCTTCGTATAGTTGTTTGTTTGGACGACCTTGGATTCATTCAGCTAGGTCAGTCTCGTCTTCACTACATGAGAGGATGATTAGGCCATTGTCTATGGGGAGGAGGACATGTCTATGGGGAGGAGCACTTCCTTATGTTGAAGCAGCCAAGGAAGCTTTTGAGTGCTCATACAGATCGTTTGAGGTCGCCAATGCTACTATCTTTCCAACTGAAGGTTTAGATCTAGATCGCTATATGTCAAGAACTTCTCTAATGATTGCAAAGACGATAATAAGAAGTGATTTTCAAATGAACATAGGATTGGGGAAGAATAATCAAGGAAACAAAGAGTTGATCTCTCTTTCTAAAGCTAAAAAGAGGTTAGAATTGGGATATAAGCCGATGGCTTTTGAGGATGTTGGAGACGAAAACATCAATTTAATTGTTGATCTTGAAGTTCTGATCTATAATCTCGAACAAAATGTGGAGGACAAATGCGATGTATCATCCGAGTTACTCAAGATGAGAGAGCAAGAGGAAAAGAAGACGATTATTTGCAAAGCCCCCGATACTTGTCCCACCAACTTCAAGACGACCATTAATCTTATACCTGATAGTAAAGGAAAGGTCAATGGGATGTGTGCTGGGCAACATGACTCTATAGGAAGGAAAGAGCGAGTTGTTTATTATTTGAGCAAGAAGTTCATAAGTTATGAGTCAAAGTACTCGTTGTTGGAAAAAACATGTGGTGCCTTAGCATGGAGAGCTCAAAGATGA

Protein sequence

MGSRIKMNPGSKEWNDYGFCFKIKENDDPKEKGGRSTQVELDSKKRCKDKVHHLTTSMRVLFQILYEAGYLSPRVDSNGGNGIGYTVEKGCLFHPEVDGHSIEDCVEFKRETDSQEIKVDMISNALSNEKTSKEESSIREPLIIHYEEKSNVTSCIQMPKTMIVKIPGPFAYKDNQVVPWKYECQFITKSTPDNLKNVPKEDEVRQRKGKVMEITSGDDLNDLSKVFAENATLVRRKTDNEFVFEEEAREFLKLIKQNLFYLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNSSYSCLFGRPWIHSARSVSSSLHERMIRPLSMGRRTCLWGGALPYVEAAKEAFECSYRSFEVANATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNNQGNKELISLSKAKKRLELGYKPMAFEDVGDENINLIVDLEVLIYNLEQNVEDKCDVSSELLKMREQEEKKTIICKAPDTCPTNFKTTINLIPDSKGKVNGMCAGQHDSIGRKERVVYYLSKKFISYESKYSLLEKTCGALAWRAQR
Homology
[Close]
BLAST of Lsi03G006880 vs. TrEMBL
Match: A0A061G058_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_014965 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 7.4e-33
Identity = 79/183 (43.17%), Postives = 111/183 (60.66%), Query Frame = 1 

Query: 258 NLFYLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNSSYSCLFGRPWIH 317
           N+ Y++ S M+VRAFD  RREV+GDI+IP +IGP TF + FQV+D+  SY+ L GRPWIH
Sbjct: 150 NMSYMRKSQMIVRAFDGTRREVVGDIEIPVEIGPCTFTIEFQVMDIAPSYNYLLGRPWIH 209

Query: 318 SARSVSSSLHERMIRPLSMGRRTCLWG---------GALPYVEAAKEAFECSYRSFEVAN 377
            A ++ SSLH++ ++ +  G+  C+ G            PYVEAA+E  ECS+RSFE  N
Sbjct: 210 MAGAIPSSLHQK-VKFIVEGKIVCVNGEEDLLISKPADTPYVEAAEEVPECSFRSFEFVN 269

Query: 378 ATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNNQGNKELISLSKAKKRLELG 432
            T            +S+T+ MI   I+   ++   GLGK  QG +  I  +K ++R  LG
Sbjct: 270 TTYVGEGTTPPIPRLSKTTKMIVNQILGKGYRAGAGLGKELQGIRSPIRTTKNEERFGLG 329

[Close]
BLAST of Lsi03G006880 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 78/183 (42.62%), Postives = 111/183 (60.66%), Query Frame = 1 

Query: 258  NLFYLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNSSYSCLFGRPWIH 317
            N+ Y++ S M+VRAFD  RREV+GDI+IP +IGP TF + FQV+D+  SY+ L GRPWIH
Sbjct: 898  NMSYMRKSQMIVRAFDGTRREVVGDIEIPVEIGPCTFTIEFQVMDIAPSYNYLLGRPWIH 957

Query: 318  SARSVSSSLHERMIRPLSMGRRTCLWG---------GALPYVEAAKEAFECSYRSFEVAN 377
             A ++ SSLH++ ++ +  G+  C+ G            PYVEAA+E  ECS+RSFE  N
Sbjct: 958  MAGAIPSSLHQK-VKFIMEGKIVCVNGEEDLLISKPADTPYVEAAEEVPECSFRSFEFVN 1017

Query: 378  ATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNNQGNKELISLSKAKKRLELG 432
             T            +S+T+ MI   I+   ++   GLGK  QG +  I  +K +++  LG
Sbjct: 1018 TTYVGEGTTPPIPRLSKTTKMIVSQILGKGYRAGAGLGKELQGIRSPIHTTKNEEKFGLG 1077

[Close]
BLAST of Lsi03G006880 vs. TrEMBL
Match: A0A061ESA1_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_022266 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 80/202 (39.60%), Postives = 115/202 (56.93%), Query Frame = 1 

Query: 239 DNEFVFEEEAREFLKLIKQNLFYLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPF 298
           DN        R  L  +  ++ Y+++S MVVRAFD   REV+GDI++P KIGP  F V F
Sbjct: 649 DNGSALNVMPRSTLTKLPVDVSYMRTSRMVVRAFDGTTREVVGDIELPIKIGPCIFEVQF 708

Query: 299 QVLDVNSSYSCLFGRPWIHSARSVSSSLHERMIRPLSMGRR---------TCLWGGALPY 358
           QV+D+  SY+CL GRPWIH A +V SSLH++ ++ ++ G+            +   + PY
Sbjct: 709 QVMDIAPSYNCLLGRPWIHMAGAVPSSLHQK-VKFIAKGQLISVCAEEDILAIQPSSAPY 768

Query: 359 VEAAKEAFECSYRSFEVANATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNN 418
           VEA +E  ECS+RSFE  NAT    + +     +S  + M  K  +    +  +GLGKN 
Sbjct: 769 VEATEEVPECSFRSFEFVNATYIGEKKVIPTPRLSVATKMGVKQTVGKGCRAGLGLGKNL 828

Query: 419 QGNKELISLSKAKKRLELGYKP 432
           QG    ++  K ++R  LGYKP
Sbjct: 829 QGINRPLTPMKNEERFGLGYKP 849

[Close]
BLAST of Lsi03G006880 vs. TrEMBL
Match: A0A061F6H8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031483 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 74/183 (40.44%), Postives = 109/183 (59.56%), Query Frame = 1 

Query: 258  NLFYLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNSSYSCLFGRPWIH 317
            N+ Y++ S M+VRAF+  RREV+GDI+IP +IGP TF + FQV+D+  SY+CL GRPWIH
Sbjct: 1005 NMSYMQKSQMIVRAFNGIRREVVGDIEIPIEIGPCTFTIEFQVMDIAPSYNCLLGRPWIH 1064

Query: 318  SARSVSSSLHERMIRPLSMGRRTCLWGGA---------LPYVEAAKEAFECSYRSFEVAN 377
             A ++ SSLH++ ++ +  G+   + G            PYVEAA+E  EC +RSFE  N
Sbjct: 1065 MAGAIPSSLHQK-VKFIVDGKIVYVNGEEDLLISKPTDTPYVEAAEEVLECFFRSFEFVN 1124

Query: 378  ATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNNQGNKELISLSKAKKRLELG 432
             T    E       +S+T+ M+   I+   ++  + L    QG +  I  +K ++R  LG
Sbjct: 1125 TTYVGEETTAPIPRLSKTTKMVVSQIVGKGYRAGVRLRIELQGIRRPIRATKNEERFGLG 1184

[Close]
BLAST of Lsi03G006880 vs. TrEMBL
Match: A0A0L9U1L8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g006100 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.6e-30
Identity = 71/179 (39.66%), Postives = 113/179 (63.13%), Query Frame = 1 

Query: 261 YLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNSSYSCLFGRPWIHSAR 320
           ++K S+M+VRAFD ++REV+G++++P ++GP  F V FQV+D+  +YSCL GRPWIHSAR
Sbjct: 109 HMKPSSMIVRAFDGSKREVMGEVELPVQVGPCVFQVEFQVMDILPAYSCLLGRPWIHSAR 168

Query: 321 SVSSSLHERMIRPLS------MGRRTCLWGG--ALPYVEAAKEAFECSYRSFEVANATIF 380
            V S+LH+++   +        G    L GG  +  Y+EAA+EA E +++S E+   T  
Sbjct: 169 VVPSTLHQKLKYVMGDKLMIVAGEEDLLVGGPSSSRYIEAAEEALETAFQSLEIVENTY- 228

Query: 381 PTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNNQGNKELISLSKAKKRLELGYKP 432
             E   ++ ++SR S+M+AK +++  +    GLGK  QG    + + + + R  LGYKP
Sbjct: 229 -VEPFAVNPHLSRASIMMAKAMLKEGYMHGKGLGKCGQGRAFPLEVVENQNRYGLGYKP 285

[Close]
BLAST of Lsi03G006880 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-45
Identity = 116/266 (43.61%), Postives = 156/266 (58.65%), Query Frame = 1 

Query: 23  IKENDDPKEKGGRSTQVELDSKKRCKDKVHHLTTSMRVLFQILYEAGYLSPRVDSNGGNG 82
           + +N  P  +G     V+  +++  K+ V  +TTSM  LFQIL+ AGYLSPR +++ G  
Sbjct: 397 VNQNPLPNHEGPAINVVDTFTERN-KNMVSGVTTSMNTLFQILHGAGYLSPRFNNDDGEK 456

Query: 83  IGYTVEKGCLFHPEVDGHSIEDCVEFKR--------------ETDSQEIKVDMISNALSN 142
           IG   ++ CLF+ E + HSIEDC EFK               +   QEI+V+MI++  S 
Sbjct: 457 IGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQISMQEIEVNMITDTSST 516

Query: 143 EKTSKEESSIREPLIIHYEEKSNVTSCIQMPKTMIVKIPGPFAYKDNQVVPWKYECQFIT 202
           +KTS E +SI +PL+IHYEEK ++ S IQ PK M ++IP PFAYKDN VVPWKYECQFIT
Sbjct: 517 KKTSNETTSIWKPLVIHYEEKPSIMSYIQKPKAMTIEIPSPFAYKDNHVVPWKYECQFIT 576

Query: 203 KS----------------TPDNLKNVPKEDEVRQRKGKVMEITSGDDLNDLSKVFAENAT 259
            +                T  NLK+V KEDEVR+RKGK +E+                  
Sbjct: 577 NNVVSTTVEGLTRSGRCYTLANLKDVSKEDEVRRRKGKAIEMA----------------- 636

[Close]
BLAST of Lsi03G006880 vs. NCBI nr
Match: gi|828335690|ref|XP_012575472.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101513027 [Cicer arietinum])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 126/436 (28.90%), Postives = 217/436 (49.77%), Query Frame = 1 

Query: 23  IKENDDPKEKGGRSTQVELDSKKRCKDKVHHLTTSMRVLFQILYEAGYLSPRVDSNGGNG 82
           +K N  P   G    ++E     +   +V  +   M ++F  L + G +    D      
Sbjct: 197 VKNNPLPVHGGPIVNRIE--ENHQVIREVEKIKAPMGLIFSELCKFGLIQGNAD------ 256

Query: 83  IGYTVEKGCLFHPEVDGHSIEDCVEFKRETDS-------QEIKVDMISNALSNEKTSKEE 142
               V+  C FH   D HSIE+C EFK+E          Q  + +     ++ +   K  
Sbjct: 257 ----VKARCNFHLNED-HSIEECNEFKKELQKLINMGTIQIGRWEKDDGMIATQSEEKLG 316

Query: 143 SSIREPLIIHYEEKSNVTSCIQMPKTMIVKIPGPFAYKDNQVVPWKYECQFITKSTPDNL 202
            +I +PL+IH+ ++ ++ +   + KT+IV+IP PF+YKDN+VVPW Y  +        +L
Sbjct: 317 ITIPKPLVIHFTKEESMNALGDL-KTLIVQIPSPFSYKDNKVVPWNYNVEV-------HL 376

Query: 203 KNVPKEDEVRQRKGKVMEITSGDDLNDLSKVFAENATLVRRKTDNEFVFEEEA-REFLKL 262
                ED    +   V  ++    +   S++++      + + +   VFE+   R++L  
Sbjct: 377 AKQKNEDVSSSKTTAVTNVSGIGGMTRNSRIYSPG----KSQREMRVVFEKSPHRQWLLA 436

Query: 263 ---IKQNLF------YLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNS 322
              IK N+       Y++ S MVVRAF+ +RREV+G+I +P +I P TF + F V+D+  
Sbjct: 437 ECHIKINISKTTLCTYMRPSPMVVRAFEGSRREVMGEIDLPVQICPVTFEITFHVMDIVP 496

Query: 323 SYSCLFGRPWIHSARSVSSSLHERMIRPLSMGRRTCLWGG----------ALPYVEAAKE 382
           +YSCL  RPWIHSA  + S+LH+++     +  +  +  G            PY+E A++
Sbjct: 497 AYSCLLSRPWIHSAGVLPSTLHQKL--KYMVNDQLVIMSGEGDLLVSNLSTTPYIETAED 556

Query: 383 AFECSYRSFEVANATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNNQGNKEL 432
           A E ++++ E+ +      E   ++ +MS T++M+AK +         GLGK+ +G KE 
Sbjct: 557 ALETAFQTLEIVDTAY--VETTPIEPHMSNTAIMVAKFMSSRGHHPWHGLGKDEEGLKEP 603

[Close]
BLAST of Lsi03G006880 vs. NCBI nr
Match: gi|659094545|ref|XP_008448120.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103490408 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 4.3e-34
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 1 

Query: 261 YLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNSSYSCLFGRPWIHSAR 320
           YL+ STMVV  FD ARREVIGDI IP KIGPSTFNV FQV+DVNSSYS L G+PWIHSA 
Sbjct: 232 YLRPSTMVVTTFDGARREVIGDIDIPLKIGPSTFNVSFQVMDVNSSYSFLLGQPWIHSAG 291

Query: 321 SVSSSLHERMIRPLSMGRRTCLWG---------GALPYVEAAKEAFECSYRSFEVANATI 375
           +V SSLH+R+   +  G +  ++G          ALPYVEA +EA ECSYRSFE+ANATI
Sbjct: 292 AVPSSLHQRLKFSIE-GGQAIVYGEDDMFVTKTSALPYVEAIEEALECSYRSFEIANATI 351

[Close]
BLAST of Lsi03G006880 vs. NCBI nr
Match: gi|571437163|ref|XP_006574029.1| (PREDICTED: uncharacterized protein LOC102663226 [Glycine max])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 81/202 (40.10%), Postives = 123/202 (60.89%), Query Frame = 1 

Query: 239 DNEFVFEEEAREFLKLIKQNLFYLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPF 298
           DN    +   +  L+ +  N  ++K S+MVVRAFD + REV G+I +PF+IGP T+ V F
Sbjct: 418 DNGSSLKVMPKSTLEKVSFNASHMKPSSMVVRAFDGSHREVRGEINLPFQIGPHTYQVTF 477

Query: 299 QVLDVNSSYSCLFGRPWIHSARSVSSSLHERMIRPLSMGRRTCLWG---------GALPY 358
           QV+D+N +YSCL G+PWIHS   VSS LH++ ++ +  G    + G           +PY
Sbjct: 478 QVMDINLAYSCLLGQPWIHSVGVVSSMLHQK-LKFVVEGHLVIISGEEDVLVSCHSFMPY 537

Query: 359 VEAAKEAFECSYRSFEVANATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNN 418
           VEAAKE+ E ++ SFEV   T    E L +   MS  ++M+A+ ++  D++  +GLGKNN
Sbjct: 538 VEAAKESLETAFLSFEVVTNTF--VEFLLMRPQMSGVTMMVARVMLGHDYEPEMGLGKNN 597

Query: 419 QGNKELISLSKAKKRLELGYKP 432
            G   L+ +++ + +  LGYKP
Sbjct: 598 DGMANLVDINENRGKFRLGYKP 616

[Close]
BLAST of Lsi03G006880 vs. NCBI nr
Match: gi|590671811|ref|XP_007038435.1| (Gag-pro-like protein [Theobroma cacao])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 79/183 (43.17%), Postives = 111/183 (60.66%), Query Frame = 1 

Query: 258 NLFYLKSSTMVVRAFDDARREVIGDIKIPFKIGPSTFNVPFQVLDVNSSYSCLFGRPWIH 317
           N+ Y++ S M+VRAFD  RREV+GDI+IP +IGP TF + FQV+D+  SY+ L GRPWIH
Sbjct: 150 NMSYMRKSQMIVRAFDGTRREVVGDIEIPVEIGPCTFTIEFQVMDIAPSYNYLLGRPWIH 209

Query: 318 SARSVSSSLHERMIRPLSMGRRTCLWG---------GALPYVEAAKEAFECSYRSFEVAN 377
            A ++ SSLH++ ++ +  G+  C+ G            PYVEAA+E  ECS+RSFE  N
Sbjct: 210 MAGAIPSSLHQK-VKFIVEGKIVCVNGEEDLLISKPADTPYVEAAEEVPECSFRSFEFVN 269

Query: 378 ATIFPTEGLDLDRYMSRTSLMIAKTIIRSDFQMNIGLGKNNQGNKELISLSKAKKRLELG 432
            T            +S+T+ MI   I+   ++   GLGK  QG +  I  +K ++R  LG
Sbjct: 270 TTYVGEGTTPPIPRLSKTTKMIVNQILGKGYRAGAGLGKELQGIRSPIRTTKNEERFGLG 329

The following BLAST results are available for this feature:
BLAST of Lsi03G006880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G006880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061G058_THECC7.4e-3343.17Gag-pro-like protein OS=Theobroma cacao GN=TCM_014965 PE=4 SV=1[more]
A0A061E6J4_THECC1.3e-3242.62Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1[more]
A0A061ESA1_THECC1.2e-3039.60Gag-pro-like protein OS=Theobroma cacao GN=TCM_022266 PE=4 SV=1[more]
A0A061F6H8_THECC4.5e-3040.44Uncharacterized protein OS=Theobroma cacao GN=TCM_031483 PE=4 SV=1[more]
A0A0L9U1L8_PHAAN7.6e-3039.66Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g006100 PE=4 SV=1[more]
BLAST of Lsi03G006880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G006880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122237|ref|XP_008461036.1|1.1e-4543.61PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo][more]
gi|828335690|ref|XP_012575472.1|1.2e-3928.90PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101513027 [Cicer arie... [more]
gi|659094545|ref|XP_008448120.1|4.3e-3465.04PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103490408 [Cucumis me... [more]
gi|571437163|ref|XP_006574029.1|3.6e-3340.10PREDICTED: uncharacterized protein LOC102663226 [Glycine max][more]
gi|590671811|ref|XP_007038435.1|1.1e-3243.17Gag-pro-like protein [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G006880.1Lsi03G006880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G006880Melon (DHL92) v3.6.1lsimedB260
Lsi03G006880Silver-seed gourdcarlsiB262
Lsi03G006880Silver-seed gourdcarlsiB671
Lsi03G006880Cucumber (Chinese Long) v3cuclsiB555
Lsi03G006880Watermelon (97103) v2lsiwmbB251
Lsi03G006880Wax gourdlsiwgoB320
Lsi03G006880Cucumber (Gy14) v1cgylsiB367
Lsi03G006880Cucurbita maxima (Rimu)cmalsiB484
Lsi03G006880Cucurbita moschata (Rifu)cmolsiB468
Lsi03G006880Cucurbita pepo (Zucchini)cpelsiB208
Lsi03G006880Wild cucumber (PI 183967)cpilsiB536
Lsi03G006880Cucumber (Chinese Long) v2culsiB522
Lsi03G006880Melon (DHL92) v3.5.1lsimeB247
Lsi03G006880Watermelon (Charleston Gray)lsiwcgB215
Lsi03G006880Watermelon (97103) v1lsiwmB233
Lsi03G006880Cucumber (Gy14) v2cgyblsiB490