Lsi03G006790 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 8621862 .. 8626828 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTTATAACTTTATACTTTAGTCAATGATTGTCTTTGAATTCTAACAATGAGTAGTTGTTTCTTTATTAAAAGAAAAAAAATAGTTGAAATTAAAAAGCAAGACAGATTGTAGGGATCCATGGACGGCCAATCTTTGAATAAATTCTCCATGCGCATTTGATTGTCAACAGCCTTGAATTTCTGTAGTGTGGGTCTCTTGGGTGAGAACTGAGAAGCCAATAACTAGCAGATGATGGACCATGTCCAAGGCCTTGCATGTTACCATTAAAATTCTATGACTGAAATGATGGAAGGACTATGCTTGGTAAATTTCTATGGTGTATATTCCAAGAGGAAGAAACAAAGAAACTACTGGTCCATATGACCTCCATTGAATTCTCCTGTACTAAAAGTTCTATTTTTCAAGCCACATTTTACACAAGATTGCCGTGAAATTCTGTTTGTAGTTTAAACTTCAATGTTAGCTATGACATATCCTATAATTAATTGGAATTTTTTTTTTGCTCCAGTATGCCTACTTAATAAAAGAAAATGAGAAGGGAGAAATGATTGGTTTTTCGTGCTATTTGAGTTTACTCAAACAAGACAGTACAATAACACTTTAGTGTGATGTGGTTGACAATGGTACTTTACTTTCAGATGTTCAAGATGACAGTGCATGTGAAAATTTGGGAATGATTTGTATTAGCAAGCTAGAAGAGTTGCCTTTGAGTATTTGTCGCTTAAATAGGAAGGTACTCCCTCTCTTGCCCTTCTGTTCTGATAATATTAGATTAATTTTAATATGCTTCTCTATAAAGAAAATGGGAAAATGGGGTTATCATGTCTACGAAGTTTTAGGACTATTAGTTCAATCTAGTTCAATCTACTTCTTGAAGGTGTAAAAAACTATGGTACCAACCTTTTTCAGTAATTTACATAGAGCATCGATTATGGAGATAAATTTAGGTAGCAAGTTTGAGGTTTTAACTTTTAACTTTGCATGCGAAAAAATATAGAAATAAACTGAAGAAAATGTAAACATAGCAGGAGAAACCCTTATGTAATTTCATTGATTCAATAAAAAGCTATATATATATAGGTTGAGAAGGAAAGAAAACTCCTGCACTAACACAATAAAAACCAAAGTAGGAGGAGGGAAAATAACCTACCTCTTTGAAGCCATGTCAGGGCCTGACGTGGCCGCATTAGTCCTCTTGCACTATATATATATATCTTGGCCTTCTTTGAATCCATGTCAGAGCTTAGGATCAATAGGGGTAAGTGTCAGGATATAGGTATTAATTTTTCTTGGGGAAGCTCAGGAGTTGGGTTGAGGGGTTGAGTTGTGAAGTAGGTTCTTTTGCCTCCTCCTACTTAAGGCTCCCTCTTGGAAGCAATACAAGGCTATCTTGTTTTGGAATTTGGTGGTGGATAAGGTTAGGAAAAGATTGGCCTCTTAGAAGAAGAGCTTCTCCTCCAAAGTTGGTAGATTGACGCTTATTCGGTTTGTTCTAAGTGGCATCCTTATCTACTATTTCTCTCTGTTAAGAGCCATTAATTTGGTATGCAAGATTATCGAGAAGCTCATGCGTAATTTCCTATGGGAAGAGGTTGATGAAGGTAAGGGGTAGAACTGGTAAGATGAGACACTGACGAGAAGTCTTAGAAATTGGGAATTTAAGGACACCAAACAAAGCCTTGTTGGCTTAGGCTTTGGTGTTTTTCCCTTGAGCCTAAGCCTCTCTAGCATAGGATTATTGAGAGCAAGTATGACCCTCACCCTTTTGAGTGGTTGTCAGGTGGAGTTGTTAAAGGCACCTTCCAGTATTTGTGAAAAGATATTTCTTATGACTCCCCTCTTTTTCTTGCCTTGTCCATTGTGTGGTGGAGGAAGGAAAAAAACATCCTTCTGGGAGGTTTAATGGGAGAGGGATAGATTCCTTTGCTCTTGTAGACGCTTTGGAAGAAACCACATTCCATAGTTTTAGTTGTAGGAGTTGGATCCTGTGGTCATGACTCTGTTTCTTGATGATTGTCAAACATTCCACTTGCATCAATGTGGTAATGTGTTGAAGCTATTCTGAGACTCAAGTCAGAAAGCTGCAATAACAAGAAAAGGAAAAATCGGAAGTCAAAGTTATACCACCAACAATTGAAAATTGGATGTGTTTTCAAAGTGCAAAGTGCCTTGAATTGTTTCCTCTTCTGTACTTTCAGCATTAGTCTCATTTCATTAAATCAATGAAAACTTTTTTTCCGTTTAAAAAATATATATTTGTTTCAGTTATGTTGTTAATGGGCATCATGTTAATGTGTATGCCTTGGATAGCAATTGATAACTACATATTGTTCTATCATTGTGTAGATTTTATTTTATTTTATTATTTTTTCAATCAAATCTAGTATCCTACATCTCTTATCGGCCTCTCCAATTCACATTGCTAACAGGCAGTTGACTGTAGCATCCTTGTAGTTGGTTACACAATGAAGCCTTCACGTGAACTTGATTTTTCTAAGGTGAGCATTCTTTTATATATATATATGTAGGCATTCTTCTAAATTGATTGTCTTAGAAACAATATGATTGATCCTTTGTATGGTATTGTTTATGTTTATTTGCATTGGTTATTTGGAGAAGTACTTTAGTTATGTGCTTCATGGGAACTTAGTTTCTCTGTTACTTCGTACCACTAGAATCAATTTGGTAATATTCCTCAAACCATTGGCAATTACTGAATATATATATATATATATATATATATATATATATGGACACACCATTTTTTTCCCAAACTACTCAGTTCTGGCAATTGTTGTTGTTGTGTATTCATGAAAAGAGAAAGGGGAACAACCCAAGGGTAAGGGGTAGAGGTTACACCTCCCTGGCAAAAAACAACTATATAAAAAACCCATCCAAACCAAGTTAATCAGCGGCACATACAGATTTGACTCCCTCTTTATTAGATTCAAGAAGGTGGATTTAACAGTAAAGCTACCAGATGGGTGACATGGGTCGATTGTCCACATTTTTGTCACTGTTGTTTCCGATTCTCACAACCCAAACGTTTAGGAAATCAAGCAGTCACCACACTCTGCAACTCTGTCAAAAAGAGGTCTTCTAAACCCCGAGCCCCAAGTTTGTTGATCACTAACAGTCAACAATGGAAACATCTTTTTTAATTGTAATGGAATAAGTATCAGGGAATTTGGTAGCTAGTGGTTCTGTACCACACCATTTGTCCTCCCAGAAACTTGATTCGTCAAATGTTTCCCACCACAAAATCTACAGAGCTGAAAAAAGTGTGTCCATAATATTGGACCACAGTCGCTATCTTCCTTTCCTTTTAGAAATTTTCAAAGCCTAACCCCATGATTCGTCCCATAGATAGCACAAATAACTTTCTCCATAAGGTTTCCTCCTCATGGGTGAATCTCCATAACCACTTCATTAAAGAGGGATTGGTCTCTTTGGTTGAAAGAACCAATCTTGAGGCCTCTGTACTGAGTAGGTAATGTTGTCAATTTCCAAGCCACAAAGTGGGAGACCGGTTTAAAAGTACCACCGACCCAAACAGGATATCTGATAATTTTTTTCTAAACGTTTAATCACCTTCAAAGGGGCTCTCATGAGGGAGAAAGAGTAGCAAGGGAGACTATTCAGCACTGAAGGGGAGCTCAGGGTTAATCTACCTCCTTTGGATAGAGAGACTCCTCTTCGTTTATCAACTTTAGTTCAAAACTTCTCAAGAAGCTTGTCCCAAGCCGTCATTGCACCATAATTTCCACCAACCAAGAACCCCAAGTAATTGAAAGGGGGAGTTTCAACCTTGAATCCAAAACAAGCCACTTTCTGAGACACCCTATCACTATCGATATTTATCCCAACCAATGTTGTTTTCGAAACACTTAAGTTCAATCCTGAGCCAATCAAGAGAAGGTTAATGATAAACCACCAATTTGTTAAATTCTCATCATCATCTGAACTTAGAAGGGTGCCATTCGCATATTGCAAATAAGAGACTTTGATACCAAGATTTCCCATGACAAAGCCTTTAATCATCCTTTTCTCAGAACAATAGTGGATAAGCCTCCTAAAAGCATCCCCCACATTAGTAAACAAGAAAGATGATAAGGGATCACCTTGCTATCCCCCTTTGAGCCAAAATTTTGCATCTAGGCCTCCCATTAATTAGGGTAGAGAAATTGGTCAACGAAAGGCATCCCCAAATCCACTGTCTCCATCTTCTTCCAAAACCCTTCACCTTGAGGATAGTATCAAGATAAGGCCAGTCCACTTTATCATAAGCTTTTACTAAATCAAGTTTCATAAAAATAAAAGAATAAAAAATAAAAAATAACCTTTTTGTTCTGTCGAATGTCATTCATCAATTGACTTTGAAGCTGTTAAAAAATTGCATCTATTTGGCGTTCTTCAACAAAAGCAGCTTGGGTTTCAGAAATAATCAATGGGAAGACTTTCTCCAATCTACGAGCGAGAACCTTGGCAATAATTTTGTAAAGATAAGTGACAAAACTAATGGGCTTGAAGTCACCCACTTTCACAGCCATTTTCTTTTTCGGAATAAAGCAAATGTAGGTCTCATTACGATGTTTGTTTATGATACCATTTCTAAAAAACTCGTGGAACTCTCCTACTAAGTCTTTCTTTAAAGTGTTCCAGGACTCTAGTCATCCCATTGGGAACCGGGTGATTTGAGGTTTCCCATATCTTGCATGGCTTTAGCAATCTCATTCTCCTCGAAAGGGCTTTCAAGCAAAGCACTATTCTGAGCAGTCAGCAGCCTCCAATCTGAGCCATCAAAGGTAAAGGGGTAATCACATTTTTTCTTGTAGGGATTTTGATAGTAACCCACAATCTCATCAACAATCTCCTTCTCTTCAAAGAGGTCTCTACCATCGTCACATTCCATCATGGAAATCACATCTACGGCCGAAGACCTCCTATGGAAGAAGCTAG

mRNA sequence

ATGGATGTTCAAGATGACAGTGCATGTGAAAATTTGGGAATGATTTGTATTAGCAAGCTAGAAGAGTTGCCTTTGAGTATTTGTCGCTTAAATAGGAAGGGCTTTCAAGCAAAGCACTATTCTGAGCAGTCAGCAGCCTCCAATCTGAGCCATCAAAGGGATTTTGATAGTAACCCACAATCTCATCAACAATCTCCTTCTCTTCAAAGAGGTCTCTACCATCGTCACATTCCATCATGGAAATCACATCTACGGCCGAAGACCTCCTATGGAAGAAGCTAG

Coding sequence (CDS)

ATGGATGTTCAAGATGACAGTGCATGTGAAAATTTGGGAATGATTTGTATTAGCAAGCTAGAAGAGTTGCCTTTGAGTATTTGTCGCTTAAATAGGAAGGGCTTTCAAGCAAAGCACTATTCTGAGCAGTCAGCAGCCTCCAATCTGAGCCATCAAAGGGATTTTGATAGTAACCCACAATCTCATCAACAATCTCCTTCTCTTCAAAGAGGTCTCTACCATCGTCACATTCCATCATGGAAATCACATCTACGGCCGAAGACCTCCTATGGAAGAAGCTAG

Protein sequence

MDVQDDSACENLGMICISKLEELPLSICRLNRKGFQAKHYSEQSAASNLSHQRDFDSNPQSHQQSPSLQRGLYHRHIPSWKSHLRPKTSYGRS

Homology

[Close]

BLAST of Lsi03G006790 vs. TrEMBL
Match: A0A0A0K483_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067440 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-08
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 1   MDVQDDSACENLGMICISKLEELPLSICRLNRK 34
           ++VQDDSACENLG +CISKLEELPLSICRLNRK
Sbjct: 124 LNVQDDSACENLGTVCISKLEELPLSICRLNRK 156

[Close]

BLAST of Lsi03G006790 vs. NCBI nr
Match: gi|778724635|ref|XP_011658841.1| (PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-08
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1


Query: 1   MDVQDDSACENLGMICISKLEELPLSICRLNRK 34
           ++VQDDSACENLG +CISKLEELPLSICRLNRK
Sbjct: 124 LNVQDDSACENLGTVCISKLEELPLSICRLNRK 156

[Close]

BLAST of Lsi03G006790 vs. NCBI nr
Match: gi|659110221|ref|XP_008455113.1| (PREDICTED: inositol-tetrakisphosphate 1-kinase 4 isoform X1 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1   MDVQDDSACENLGMICISKLEELPLSICRLNRK 34
           ++VQDD+ CENLG ICISKLEELPLSICRLNRK
Sbjct: 124 LNVQDDNTCENLGTICISKLEELPLSICRLNRK 156

[Close]

BLAST of Lsi03G006790 vs. NCBI nr
Match: gi|659110223|ref|XP_008455114.1| (PREDICTED: inositol-tetrakisphosphate 1-kinase 4 isoform X2 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1   MDVQDDSACENLGMICISKLEELPLSICRLNRK 34
           ++VQDD+ CENLG ICISKLEELPLSICRLNRK
Sbjct: 124 LNVQDDNTCENLGTICISKLEELPLSICRLNRK 156

The following BLAST results are available for this feature:

BLAST of Lsi03G006790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G006790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K483_CUCSA	5.2e-08	87.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067440 PE=4 SV=1	[more]

BLAST of Lsi03G006790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G006790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724635\|ref\|XP_011658841.1\|	7.5e-08	87.88	PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Cucumis sativus]	[more]
gi\|659110221\|ref\|XP_008455113.1\|	3.7e-07	84.85	PREDICTED: inositol-tetrakisphosphate 1-kinase 4 isoform X1 [Cucumis melo]	[more]
gi\|659110223\|ref\|XP_008455114.1\|	3.7e-07	84.85	PREDICTED: inositol-tetrakisphosphate 1-kinase 4 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032957	inositol trisphosphate metabolic process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0052726	inositol-1,3,4-trisphosphate 5-kinase activity
molecular_function	GO:0052725	inositol-1,3,4-trisphosphate 6-kinase activity
molecular_function	GO:0047325	inositol tetrakisphosphate 1-kinase activity
molecular_function	GO:0000287	magnesium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006790.1	Lsi03G006790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006790	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006790	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006790	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006790	Watermelon (Charleston Gray)	lsiwcgB212
Lsi03G006790	Watermelon (Charleston Gray)	lsiwcgB215
Lsi03G006790	Watermelon (97103) v1	lsiwmB227
Lsi03G006790	Watermelon (97103) v1	lsiwmB233
Lsi03G006790	Cucumber (Gy14) v2	cgyblsiB490
Lsi03G006790	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006790	Silver-seed gourd	carlsiB262
Lsi03G006790	Silver-seed gourd	carlsiB671
Lsi03G006790	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G006790	Watermelon (97103) v2	lsiwmbB247
Lsi03G006790	Watermelon (97103) v2	lsiwmbB251
Lsi03G006790	Wax gourd	lsiwgoB320
Lsi03G006790	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006790	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006790	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006790	Cucurbita pepo (Zucchini)	cpelsiB208