Lsi03G006350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G006350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 7856871 .. 7857588 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGCAAAGGGCGCCCTCTACTTCTACTTCTAACTAAAGGCGAACAGCCGGCATTGCAAGCAAATAGAGAGCCCCCGCCCGTTTGAGTCGGTCGTTCCGAGCCGGAAAGCGTACCGGCAGTTTGAGTCGCGAAAGGGCCGCTTGCTTAATTATATTATTCTAATTCATAATATCTATCTAAGATTCTATATATATTAGATAATAGAAAGAAAATCATTTTTTTTTCCAGAAGAGGTTCGAAGACGCTCGACTGTAAAGGAGAGGAAGAAGCAAATAAAGCAAAGGCCTCCTCTTTCCGTCCGCTCTTCCCGAAGTGAGCGAATTGCATGTAGAGATCCGTAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATAACGGTTATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCTTATCTTCACCTGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCAGATCTCAATCTAGCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCCTTCGGGCAATACGGCTTTCATAATACGCGAAGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTGACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGCGAGACGGCCCA

mRNA sequence

TGGGGCAAAGGGCGCCCTCTACTTCTACTTCTAACTAAAGGCGAACAGCCGGCATTGCAAGCAAATAGAGAGCCCCCGCCCATAATAGAAAGAAAATCATTTTTTTTTCCAGAAGAGGTTCGAAGACGCTCGACTGTAAAGGAGAGGAAGAAGCAAATAAAGCAAAGGCCTCCTCTTTCCGTCCGCTCTTCCCGAAGTGAGCGAATTGCATCCTACCACCCCTTATCTTCACCTGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCAGATCTCAATCTAGCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCCTTCGGGCAATACGGCTTTCATAATACGCGAAGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTGACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGCGAGACGGCCCA

Coding sequence (CDS)

TGGGGCAAAGGGCGCCCTCTACTTCTACTTCTAACTAAAGGCGAACAGCCGGCATTGCAAGCAAATAGAGAGCCCCCGCCCATAATAGAAAGAAAATCATTTTTTTTTCCAGAAGAGGTTCGAAGACGCTCGACTGTAAAGGAGAGGAAGAAGCAAATAAAGCAAAGGCCTCCTCTTTCCGTCCGCTCTTCCCGAAGTGAGCGAATTGCATCCTACCACCCCTTATCTTCACCTGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCAGATCTCAATCTAGCGACGTGGAACCACACAGCTGCCGCTGCCCTTTGGGCACGCCTCCTACGCTTACCACTCACCTACGCTCTTGCAGCATGCCCCCTTCGGGCAATACGGCTTTCATAATACGCGAAGCAGCTGAGCGAGCGATAGCTATTCGATCGCTATATTCTTGCGATAGCGAAGGCGTGGTTGAGACTGACAGAGAAAGTCGATGCGAAGGTTCAGATCGAAGATCTTCGCGAGACGGCCCA

Protein sequence

WGKGRPLLLLLTKGEQPALQANREPPPIIERKSFFFPEEVRRRSTVKERKKQIKQRPPLSVRSSRSERIASYHPLSSPDTRQSKSPPPCRSQSSDVEPHSCRCPLGTPPTLTTHLRSCSMPPSGNTAFIIREAAERAIAIRSLYSCDSEGVVETDRESRCEGSDRRSSRDGP
Homology
[Close]
BLAST of Lsi03G006350 vs. TrEMBL
Match: A0A0D2PZN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G162300 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 71/152 (46.71%), Postives = 80/152 (52.63%), Query Frame = 1 

Query: 1    WGKGRPLLLLLTKGEQPALQANREPPP-IIERKSFFFPEEVRRRSTVKERKKQIKQRPPL 60
            WGKGRPLLLLLTK EQPALQAN EPPP   +R    FP      S + E  K       L
Sbjct: 956  WGKGRPLLLLLTKREQPALQANIEPPPEEADRAKAPFP------SALPEVSK-------L 1015

Query: 61   SVRSSRSERIASYHPLSSPDTRQSKSPPPCRSQSSD-VEPHSCRCPLGTPPTLTTHLRSC 120
             V   R     +YHP SSPD RQ+KSPPPCRSQSSD    H+          L  HL   
Sbjct: 1016 HVEIRR-----AYHPFSSPDIRQAKSPPPCRSQSSDGTWNHTAAA------ALRAHL--L 1073

Query: 121  SMPPSGNTAFIIREAAERAIAIRSLYSCDSEG 151
             +P        +  A   +IA+RSLYS D EG
Sbjct: 1076 RLP--------VTYALAASIALRSLYSRDGEG 1073

[Close]
BLAST of Lsi03G006350 vs. TAIR10
Match: AT2G07706.1 (AT2G07706.1 unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-07
Identity = 33/66 (50.00%), Postives = 36/66 (54.55%), Query Frame = 1 

Query: 1   WGKGRPLLLLLTKGEQPALQANREPPPIIERKSFFFPEEVRRRSTVKERKKQIKQRPPLS 60
           WGKGRPLLLLLTK EQPALQANREPP   E       EE  R          + +   + 
Sbjct: 300 WGKGRPLLLLLTKREQPALQANREPPARFESLRAGKQEEADRAKASPLLASALPEAVEVG 359

Query: 61  VRSSRS 67
            RS RS
Sbjct: 360 TRSRRS 365

[Close]
BLAST of Lsi03G006350 vs. NCBI nr
Match: gi|763742257|gb|KJB09756.1| (hypothetical protein B456_001G162300 [Gossypium raimondii])

HSP 1 Score: 85.9 bits (211), Expect = 7.6e-14
Identity = 71/152 (46.71%), Postives = 80/152 (52.63%), Query Frame = 1 

Query: 1    WGKGRPLLLLLTKGEQPALQANREPPP-IIERKSFFFPEEVRRRSTVKERKKQIKQRPPL 60
            WGKGRPLLLLLTK EQPALQAN EPPP   +R    FP      S + E  K       L
Sbjct: 956  WGKGRPLLLLLTKREQPALQANIEPPPEEADRAKAPFP------SALPEVSK-------L 1015

Query: 61   SVRSSRSERIASYHPLSSPDTRQSKSPPPCRSQSSD-VEPHSCRCPLGTPPTLTTHLRSC 120
             V   R     +YHP SSPD RQ+KSPPPCRSQSSD    H+          L  HL   
Sbjct: 1016 HVEIRR-----AYHPFSSPDIRQAKSPPPCRSQSSDGTWNHTAAA------ALRAHL--L 1073

Query: 121  SMPPSGNTAFIIREAAERAIAIRSLYSCDSEG 151
             +P        +  A   +IA+RSLYS D EG
Sbjct: 1076 RLP--------VTYALAASIALRSLYSRDGEG 1073

The following BLAST results are available for this feature:
BLAST of Lsi03G006350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G006350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2PZN2_GOSRA5.3e-1446.71Uncharacterized protein OS=Gossypium raimondii GN=B456_001G162300 PE=4 SV=1[more]
BLAST of Lsi03G006350 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07706.12.5e-0750.00 unknown protein[more]
BLAST of Lsi03G006350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763742257|gb|KJB09756.1|7.6e-1446.71hypothetical protein B456_001G162300 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G006350.1Lsi03G006350.1mRNA