Lsi03G006340 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	BnaC02g31340D protein
Location	chr03 : 7855211 .. 7855670 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGTATCAACAACAAGAAAAAAAACAAGCAAATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAACGCCCTAGGCGTAGGGGAGATCGGAGCAACAGGGAACGCCTAGACGACGTTTTTCTTCCTGGGCAGCTGTAAGTAGATCGAGAGGTCGTTCCGCCCCTTGTCCCCGAATAAGGGTAATATGTTCTCATAAAAGGTTGCTCCAATCTGACCTAGCTGGCAAGCGATCCCAGTTCGCAGCAGAGAACAAGACAGGAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAAGCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGCTACCTAAGGAAACTCCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGAGAGGTTCACCA

mRNA sequence

AGTCCTCTCACTACCAACCAGCAGACATCATCTGGCTGGGTCTTGCCGGTATCAACAACAAGAAAAAAAACAAGCAAATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAACGCCCTAGGCGTAGGGGAGATCGGAGCAACAGGGAACGCCTAGACGACGTTTTTCTTCCTGGGCAGCTATCGAGAGGTCGTTCCGCCCCTTGTCCCCGAATAAGGGTAATATGTTCTCATAAAAGGTTGCTCCAATCTGACCTAGCTGGCAAGCGATCCCAGTTCGCAGCAGAGAACAAGACAGGAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAAGCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGCTACCTAAGGAAACTCCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGAGAGGTTCACCA

Coding sequence (CDS)

ATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAACGCCCTAGGCGTAGGGGAGATCGGAGCAACAGGGAACGCCTAGACGACGTTTTTCTTCCTGGGCAGCTATCGAGAGGTCGTTCCGCCCCTTGTCCCCGAATAAGGGTAATATGTTCTCATAAAAGGTTGCTCCAATCTGACCTAGCTGGCAAGCGATCCCAGTTCGCAGCAGAGAACAAGACAGGAAGCGAGCGTACCTTTGTTCGCTTCTTCTCCACCAAGCACGGAAGTTTAAGGATAACTGTAGGTCGGTGGCTACCTAAGGAAACTCCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGAGAGGTTCACCA

Protein sequence

METATNYGSWPRQRPRRRGDRSNRERLDDVFLPGQLSRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRRGSP

Homology

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BLAST of Lsi03G006340 vs. TrEMBL
Match: F4IMB1_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07599 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-37
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRSAPCPR  VICS K LLQSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVG
Sbjct: 173 SRGRSAPCPRRWVICSQKMLLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVG 232

Query: 97  RWLPKETPIRSAPRLGGIYLIPITRRGSP 126
           RWLPKET IRSAPR GGIYLIPITRRGSP
Sbjct: 233 RWLPKETAIRSAPRKGGIYLIPITRRGSP 261

[Close]

BLAST of Lsi03G006340 vs. TrEMBL
Match: F4IMB2_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07599 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-37
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRSAPCPR  VICS K LLQSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVG
Sbjct: 258 SRGRSAPCPRRWVICSQKMLLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVG 317

Query: 97  RWLPKETPIRSAPRLGGIYLIPITRRGSP 126
           RWLPKET IRSAPR GGIYLIPITRRGSP
Sbjct: 318 RWLPKETAIRSAPRKGGIYLIPITRRGSP 346

[Close]

BLAST of Lsi03G006340 vs. TrEMBL
Match: A0A0D2U4T9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G212600 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 73/85 (85.88%), Postives = 74/85 (87.06%), Query Frame = 1


Query: 38  RGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVGR 97
           RGRSAP PR  VICS K L QSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVGR
Sbjct: 79  RGRSAPYPRRWVICSQKMLFQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVGR 138

Query: 98  WLPKETPIRSAPRLGGIYLIPITRR 123
           WLPKET IRS P LGGIYLI ITRR
Sbjct: 139 WLPKETLIRSTPPLGGIYLISITRR 163

[Close]

BLAST of Lsi03G006340 vs. TrEMBL
Match: A0A078HIR1_BRANA (BnaC02g31340D protein OS=Brassica napus GN=BnaC02g31340D PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-30
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 56  LLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIY 115
           LLQSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIY
Sbjct: 2   LLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIY 61

Query: 116 LIPITRRGSP 126
           LIPITRRGSP
Sbjct: 62  LIPITRRGSP 71

[Close]

BLAST of Lsi03G006340 vs. TrEMBL
Match: A0A0D2QRB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G164300 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 68/76 (89.47%), Postives = 69/76 (90.79%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRSAPCPR  VICS K L QSDLAG+RSQFAAENKT SERTFVRFFSTKH SLRITVG
Sbjct: 48  SRGRSAPCPRRWVICSQKMLFQSDLAGERSQFAAENKTASERTFVRFFSTKHESLRITVG 107

Query: 97  RWLPKETPIRSAPRLG 113
           RWLPKETPIRSAPRLG
Sbjct: 108 RWLPKETPIRSAPRLG 123

[Close]

BLAST of Lsi03G006340 vs. TAIR10
Match: AT2G07599.2 (AT2G07599.2 unknown protein)

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-40
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRSAPCPR  VICS K LLQSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVG
Sbjct: 258 SRGRSAPCPRRWVICSQKMLLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVG 317

Query: 97  RWLPKETPIRSAPRLGGIYLIPITRRGSP 126
           RWLPKET IRSAPR GGIYLIPITRRGSP
Sbjct: 318 RWLPKETAIRSAPRKGGIYLIPITRRGSP 346

[Close]

BLAST of Lsi03G006340 vs. NCBI nr
Match: gi|1012266752|ref|XP_015947571.1| (PREDICTED: uncharacterized protein LOC107472572 [Arachis duranensis])

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-39
Identity = 83/89 (93.26%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRS PCPR RVICSHK LLQSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVG
Sbjct: 98  SRGRSVPCPRGRVICSHKFLLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVG 157

Query: 97  RWLPKETPIRSAPRLGGIYLIPITRRGSP 126
           RWLPKETPIRSAP+LGGIYLIPITRRGSP
Sbjct: 158 RWLPKETPIRSAPQLGGIYLIPITRRGSP 186

[Close]

BLAST of Lsi03G006340 vs. NCBI nr
Match: gi|731439434|ref|XP_010646950.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100853704, partial [Vitis vinifera])

HSP 1 Score: 169.1 bits (427), Expect = 4.9e-39
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRSAPCP   VICSHK LLQSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVG
Sbjct: 108 SRGRSAPCPXRWVICSHKMLLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVG 167

Query: 97  RWLPKETPIRSAPRLGGIYLIPITRRGSP 126
           RWLPKETPIRSAPRLGGIYLIPITRRGSP
Sbjct: 168 RWLPKETPIRSAPRLGGIYLIPITRRGSP 196

[Close]

BLAST of Lsi03G006340 vs. NCBI nr
Match: gi|1009176138|ref|XP_015869270.1| (PREDICTED: uncharacterized protein LOC107406644 [Ziziphus jujuba])

HSP 1 Score: 168.7 bits (426), Expect = 6.5e-39
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRSAPCPRI VICS KRLLQSDLAG+RSQFAAENKT SERTFVRFFSTKHGSLRITVG
Sbjct: 184 SRGRSAPCPRIWVICSQKRLLQSDLAGERSQFAAENKTASERTFVRFFSTKHGSLRITVG 243

Query: 97  RWLPKETPIRSA-PRLGGIYLIPITRRGSP 126
           RWLPKETPIRSA PRLGGIYLIPITRRGSP
Sbjct: 244 RWLPKETPIRSAPPRLGGIYLIPITRRGSP 273

[Close]

BLAST of Lsi03G006340 vs. NCBI nr
Match: gi|764640284|ref|XP_011470725.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105353361, partial [Fragaria vesca subsp. vesca])

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 1


Query: 37  SRGRSAPCPRIRVICSHKRLLQSDLAGKRSQFAAENKTGSERTFVRFFSTKHGSLRITVG 96
           SRGRSAPCPRI VICS K+ LQSDLAG+RSQFAAENKT SERTFVRFFSTKHG LRITVG
Sbjct: 49  SRGRSAPCPRIWVICSQKKSLQSDLAGERSQFAAENKTASERTFVRFFSTKHGXLRITVG 108

Query: 97  RWLPKETPIRSAPRLGGIYLIPITRRGSP 126
           RWLPKETPIRSAPRLGGIYLIPITRRGSP
Sbjct: 109 RWLPKETPIRSAPRLGGIYLIPITRRGSP 137

[Close]

BLAST of Lsi03G006340 vs. NCBI nr
Match: gi|1021526462|ref|XP_016206703.1| (PREDICTED: uncharacterized protein LOC107647094 [Arachis ipaensis])

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-38
Identity = 88/121 (72.73%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 5   TNYGSWPRQRPRRRGDRSNRERLDDVFLPGQLSRGRSAPCPRIRVICSHKRLLQSDLAGK 64
           T+YG W      R   +    R    +     SRGRS PCPR RVICSHK LLQSDLAG+
Sbjct: 116 TSYG-WVLPASGRSEQQGMPRRCFSSWAAVSRSRGRSVPCPRGRVICSHKFLLQSDLAGE 175

Query: 65  RSQFAAENKTGSERTFVRFFSTKHGSLRITVGRWLPKETPIRSAPRLGGIYLIPITRRGS 124
           RSQFAAENKT SE TFVRFFSTKHGSLRITVGRWLPKETPIRSAP+LGGIYLIPITRRGS
Sbjct: 176 RSQFAAENKTASESTFVRFFSTKHGSLRITVGRWLPKETPIRSAPQLGGIYLIPITRRGS 235

Query: 125 P 126
           P
Sbjct: 236 P 235

The following BLAST results are available for this feature:

BLAST of Lsi03G006340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G006340 vs. TrEMBL


Match Name	E-value	Identity	Description
F4IMB1_ARATH	2.5e-37	91.01	Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07599 PE=4 SV=1	[more]
F4IMB2_ARATH	2.5e-37	91.01	Uncharacterized protein OS=Arabidopsis thaliana GN=At2g07599 PE=4 SV=1	[more]
A0A0D2U4T9_GOSRA	2.0e-31	85.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G212600 PE=4 SV=1	[more]
A0A078HIR1_BRANA	2.2e-30	97.14	BnaC02g31340D protein OS=Brassica napus GN=BnaC02g31340D PE=4 SV=1	[more]
A0A0D2QRB6_GOSRA	1.5e-29	89.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G164300 PE=4 SV=1	[more]

BLAST of Lsi03G006340 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07599.2	1.3e-40	91.01	unknown protein	[more]

BLAST of Lsi03G006340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012266752\|ref\|XP_015947571.1\|	2.2e-39	93.26	PREDICTED: uncharacterized protein LOC107472572 [Arachis duranensis]	[more]
gi\|731439434\|ref\|XP_010646950.1\|	4.9e-39	93.26	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100853704, partial [V...	[more]
gi\|1009176138\|ref\|XP_015869270.1\|	6.5e-39	94.44	PREDICTED: uncharacterized protein LOC107406644 [Ziziphus jujuba]	[more]
gi\|764640284\|ref\|XP_011470725.1\|	1.1e-38	92.13	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105353361, partial [F...	[more]
gi\|1021526462\|ref\|XP_016206703.1\|	1.9e-38	72.73	PREDICTED: uncharacterized protein LOC107647094 [Arachis ipaensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006340.1	Lsi03G006340.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006340	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006340	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006340	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006340	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006340	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006340	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006340	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006340	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006340	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006340	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006340	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006340	Watermelon (97103) v1	lsiwmB269
Lsi03G006340	Watermelon (97103) v1	lsiwmB245
Lsi03G006340	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006340	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006340	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G006340	Watermelon (97103) v2	lsiwmbB226
Lsi03G006340	Wax gourd	lsiwgoB307
Lsi03G006340	Wax gourd	lsiwgoB320
Lsi03G006340	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G006340	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006340	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006340	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006340	Cucurbita maxima (Rimu)	cmalsiB662