Lsi03G006320 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome c oxidase subunit 2
Location	chr03 : 7845920 .. 7847773 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTAATGTAATGAGAGTGTGGATTCAAAATTGTAACCTCCCATTGCTCGAGATCCGATAGCATGCAGCAACTAGTTGTAAGAAAGAGGGGGGAGGAGAAAGATATATAGAAAGTGTGCAGTGAGGGTGGTTGTAAATCACTAGGTAGCCAGTCTTTACTTAAAAAGGCCCAAGCAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGTCTTCCTGAATTGGGAGAGCAAGAACAAGTCTCTCTTTTTTTTGGGGGGGAGCAGAGCAGTCAAAGAATAAACCAAACAAAATGATTGTTCTAAAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTTGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATCAAAAAAATCCAATACCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTTGGACCATTTTTCCTAGTATCATTCCGATGTTCATTGCTATACCATCCTTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCCGGGGTGCGAGCCACCCGAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTGTAGATAAGATCGAAGAAGGGGCCAGGCTCCCGGTGGAGCAGAGGAGACGGTTAGGATAACGAACTTGAAACGCGGAGCCCGAGCGGCCGGCGAGCGAGTGGTTAGTGGCCAATAGCGCCCTAGTTGATGGCATTCCTCTCCGCGGCTGGCACTCGAGGAACCACGGGGCACTCCATACGGAGCAAGCAAGTCTTGGGGATGAGACGCCCGCGCAAGGACCTCAATTCTCATTAGGAGGTCGAACCAAGGACCTATGGAAGTCGGGGCTACCCCCTCCCCATGGGCAACGCAACAGTGTCCTGAGGAAGGAGTTTAGAGGCCTTATAGTAGCACGGACTGATTTTTCTTTCTAGGTCATGCGAAGGGGGCCAGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCTGAGTTATTCCAGCTTCTTCATGATTTCGTGCCGCGGTAAAAAAAAAAAGGGCCGTCTCAGCGGAAGGAGAAGGACCTGCAACGGCGGAGACTACTGACCCTCTTCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCAGGAATCCTAAATATGAGGGATCCGGATCCCTCAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCGAAGCAGCTCGACCGATAG

mRNA sequence

ATGACTGCCCAAGCAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGTCTTCCTGAATTGGGAGAGCAAGAACAATCAAAGAATAAACCAAACAAAATGATTGTTCTAAAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTTGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATCAAAAAAATCCAATACCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTTGGACCATTTTTCCTAGTATCATTCCGATGTTCATTGCTATACCATCCTTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCCGGGGTGCGAGCCACCCGAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTGGGCCAGGCTCCCGGTGGAGCAGAGGAGACGCCCGAGCGGCCGGCGAGCGAGTGGTTAGTGGCCAATAGCGCCCTAGTTGATGGCATTCCTCTCCGCGGCTGGCACTCGAGGAACCACGGGGCACTCCATACGGAGCAAGCAAGTCTTGGGGATGAGACGCCCGCGCAAGGACCTCAATTCTCATTAGGAGGTCGAACCAAGGACCTATGGAAGTCGGGGCTACCCCCTCCCCATGGGCAACGCAACAGTGTCCTGAGGAAGGAGTTTAGAGGCCTTATAGTCATGCGAAGGGGGCCAGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCTGAGTTATTCCAGCTTCTTCATGATTTCGTGCCGCGGGCCGTCTCAGCGGAAGGAGAAGGACCTGCAACGGCGGAGACTACTGACCCTCTTCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCAGGAATCCTAAATATGAGGGATCCGGATCCCTCAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCGAAGCAGCTCGACCGATAG

Coding sequence (CDS)

ATGACTGCCCAAGCAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGTCTTCCTGAATTGGGAGAGCAAGAACAATCAAAGAATAAACCAAACAAAATGATTGTTCTAAAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTTGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATCAAAAAAATCCAATACCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTTGGACCATTTTTCCTAGTATCATTCCGATGTTCATTGCTATACCATCCTTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCCGGGGTGCGAGCCACCCGAGAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCTGGGCCAGGCTCCCGGTGGAGCAGAGGAGACGCCCGAGCGGCCGGCGAGCGAGTGGTTAGTGGCCAATAGCGCCCTAGTTGATGGCATTCCTCTCCGCGGCTGGCACTCGAGGAACCACGGGGCACTCCATACGGAGCAAGCAAGTCTTGGGGATGAGACGCCCGCGCAAGGACCTCAATTCTCATTAGGAGGTCGAACCAAGGACCTATGGAAGTCGGGGCTACCCCCTCCCCATGGGCAACGCAACAGTGTCCTGAGGAAGGAGTTTAGAGGCCTTATAGTCATGCGAAGGGGGCCAGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCTGAGTTATTCCAGCTTCTTCATGATTTCGTGCCGCGGGCCGTCTCAGCGGAAGGAGAAGGACCTGCAACGGCGGAGACTACTGACCCTCTTCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCAGGAATCCTAAATATGAGGGATCCGGATCCCTCAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCGAAGCAGCTCGACCGATAG

Protein sequence

MTAQAMPKDSHAFLGWTNPTGDFRLPELGEQEQSKNKPNKMIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIGRLLSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAKLGQAPGGAEETPERPASEWLVANSALVDGIPLRGWHSRNHGALHTEQASLGDETPAQGPQFSLGGRTKDLWKSGLPPPHGQRNSVLRKEFRGLIVMRRGPVQDRTVALQRQQTLSTARRHSLSELFQLLHDFVPRAVSAEGEGPATAETTDPLLVPSRLLRVREARNPKYEGSGSLKIEKGGQGFRKGLPPLPGQDRWEGAKQLDR

Homology

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BLAST of Lsi03G006320 vs. Swiss-Prot
Match: COX2_SOYBN (Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2)

HSP 1 Score: 451.1 bits (1159), Expect = 1.7e-125
Identity = 220/229 (96.07%), Postives = 224/229 (97.82%), Query Frame = 1


Query: 45  KWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHF 104
           +WLFLTIAPCDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI VFVSRILVRALWHF
Sbjct: 4   EWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVSRILVRALWHF 63

Query: 105 HYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQ 164
           HY+KNPIPQRIVHGTTIEIL TIFPSIIPMFIAIPSFALLYSMDEVVVDPA+TIKAIGHQ
Sbjct: 64  HYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAITIKAIGHQ 123

Query: 165 WYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPAD 224
           WYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVV+PAKTHLRIIVTPAD
Sbjct: 124 WYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVPAKTHLRIIVTPAD 183

Query: 225 VPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFT 274
           VPHSWAVPS GVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAFT
Sbjct: 184 VPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFT 232

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BLAST of Lsi03G006320 vs. Swiss-Prot
Match: COX2_PEA (Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2)

HSP 1 Score: 445.7 bits (1145), Expect = 7.2e-124
Identity = 218/229 (95.20%), Postives = 222/229 (96.94%), Query Frame = 1


Query: 44  LKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWH 103
           L+WLFLTIAPCDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI VFVSRILVRALWH
Sbjct: 3   LEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVSRILVRALWH 62

Query: 104 FHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGH 163
           FHY+KNPIPQRIVHGTTIEIL TIFPSIIPMFIAIPSFALLYSMD V+VDPAMTIKAIGH
Sbjct: 63  FHYKKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDGVLVDPAMTIKAIGH 122

Query: 164 QWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPA 223
           QWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQS LLEVDNRVV+PAKTHLRIIVTPA
Sbjct: 123 QWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSGLLEVDNRVVVPAKTHLRIIVTPA 182

Query: 224 DVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAF 273
           DVPHSWAVPS GVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAF
Sbjct: 183 DVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 231

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BLAST of Lsi03G006320 vs. Swiss-Prot
Match: COX2_DAUCA (Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 4.3e-121
Identity = 215/226 (95.13%), Postives = 218/226 (96.46%), Query Frame = 1


Query: 48  FLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYQ 107
           F T +PCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILI VFVSRILVRALWHFH +
Sbjct: 9   FFTNSPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILILVFVSRILVRALWHFHSK 68

Query: 108 KNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYR 167
           KNPIPQRIVHGTTIEIL TIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYR
Sbjct: 69  KNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYR 128

Query: 168 TYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPADVPH 227
           TYEYSDYNSSDEQSLTFDSYTIPEDD ELGQSRLLEVDNRVV+PAKTHLRIIVT ADVPH
Sbjct: 129 TYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRIIVTSADVPH 188

Query: 228 SWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFT 274
           SWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAFT
Sbjct: 189 SWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFT 234

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BLAST of Lsi03G006320 vs. Swiss-Prot
Match: COX2_BETVU (Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 2.2e-120
Identity = 213/232 (91.81%), Postives = 221/232 (95.26%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIV +WLF T+APCDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI VFVS ILVRA
Sbjct: 1   MIVREWLFFTMAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVSWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHY+KNPIPQRIVHGTTIEI+ TIFPSII MFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYKKNPIPQRIVHGTTIEIIRTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWYR+YEYSDYNSSDEQSLTFDSYTIPEDD ELGQSRLLEVDNRVV+PAKTH+RIIV
Sbjct: 121 IGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHIRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAF 273
           T ADV HSWAVPSSGVKCDAVPGRLNQ SILVQREGVYYGQCSEICGTNHAF
Sbjct: 181 TSADVLHSWAVPSSGVKCDAVPGRLNQTSILVQREGVYYGQCSEICGTNHAF 232

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BLAST of Lsi03G006320 vs. Swiss-Prot
Match: COX2_ARATH (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=2 SV=2)

HSP 1 Score: 432.6 bits (1111), Expect = 6.3e-120
Identity = 213/232 (91.81%), Postives = 219/232 (94.40%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVLKWLF TI+PCDAAEPWQLG QDAATP+MQGIIDLHHDIFFFLILI VFV  ILVRA
Sbjct: 1   MIVLKWLFFTISPCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHY+KN IPQRIVHGTTIEILWTIFPSII MFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYKKNAIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWY TYEYSDYNSSDEQSLTFDSY IPE+DLELGQ RLLEVDNRVV+PAKTHLRIIV
Sbjct: 121 IGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQLRLLEVDNRVVVPAKTHLRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAF 273
           T ADV HSWAVPS GVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAF
Sbjct: 181 TSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAF 232

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BLAST of Lsi03G006320 vs. TrEMBL
Match: A0A0D2PZL7_GOSRA (Cytochrome c oxidase subunit 2 OS=Gossypium raimondii GN=B456_001G161700 PE=3 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 1.9e-147
Identity = 267/288 (92.71%), Postives = 274/288 (95.14%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVL+WLFLTIA CDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI VFV RILVRA
Sbjct: 1   MIVLEWLFLTIAACDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVLRILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHYQKNPIPQRIVHGTTIEIL TIFPSIIPMFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYQKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVV+PAKTHLRIIV
Sbjct: 121 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVPAKTHLRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG 280
           T ADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAFTRAPGNIG
Sbjct: 181 TSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTRAPGNIG 240

Query: 281 RLLSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAKLGQAPGGAEETP 329
           RLLSPLWLSRTTRGA+HPRSKLLQRAAGAVGS+G+K      G +ETP
Sbjct: 241 RLLSPLWLSRTTRGATHPRSKLLQRAAGAVGSQGSK---QVLGMDETP 285

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BLAST of Lsi03G006320 vs. TrEMBL
Match: B5KXY8_BOENI (Cytochrome c oxidase subunit 2 OS=Boehmeria nivea GN=cox2 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 3.7e-143
Identity = 260/285 (91.23%), Postives = 267/285 (93.68%), Query Frame = 1


Query: 32  EQSKNKPNKMIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFV 91
           EQSK+KP KMI+   LFLTI+PCDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI V
Sbjct: 24  EQSKSKPQKMIL--GLFLTISPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILV 83

Query: 92  FVSRILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVV 151
           FV  ILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSII MFIAIPSFALLYSMDEVV
Sbjct: 84  FVLWILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVV 143

Query: 152 VDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLP 211
           VDPA+TIKAIGHQWY TYEYSDYNSSDEQSLTFDSY IPEDDLELGQ RLLEVDNRVV+P
Sbjct: 144 VDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVP 203

Query: 212 AKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHA 271
           AKTHLR IVT ADV HSWAVPS GVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHA
Sbjct: 204 AKTHLRFIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHA 263

Query: 272 FTRAPGNIGRLLSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAK 317
           F RAPGNIGR+ SPLWLSRTTRGASHPRSKLLQRAAGAVGSRGA+
Sbjct: 264 FMRAPGNIGRVPSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAR 306

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BLAST of Lsi03G006320 vs. TrEMBL
Match: A0A0U1YIQ9_BRANI (Cytochrome c oxidase subunit 2 OS=Brassica nigra GN=cox2-1 PE=3 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 1.4e-134
Identity = 239/263 (90.87%), Postives = 249/263 (94.68%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVLKWLFLTI+PCDAAEPWQLGSQDAATP+MQGIIDLHHDIFFFLILI VFV  ILVRA
Sbjct: 1   MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHY++N IPQRIVHGTTIEIL TIFPS+I MFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYKENAIPQRIVHGTTIEILRTIFPSLISMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWYRTYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDNRVV+PAKTHLRIIV
Sbjct: 121 IGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDNRVVVPAKTHLRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG 280
           T ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG
Sbjct: 181 TSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG 240

Query: 281 RLLSPLWLSRTTRGASHPRSKLL 304
           RLLSPLWLSRTTRG   P  + +
Sbjct: 241 RLLSPLWLSRTTRGCEPPEKQAI 263

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BLAST of Lsi03G006320 vs. TrEMBL
Match: A0A023VX25_BRAJU (Cytochrome c oxidase subunit 2 OS=Brassica juncea var. tumida GN=cox2-1 PE=3 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 3.1e-134
Identity = 239/264 (90.53%), Postives = 249/264 (94.32%), Query Frame = 1


Query: 40  KMIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVR 99
           KMIVLKWLFLTI+PCDAAEPWQLGSQDAATP+MQGIIDLHHDIFFFLILI VFV  ILVR
Sbjct: 76  KMIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVR 135

Query: 100 ALWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIK 159
           ALWHFHY++N IPQRIVHGTTIEIL TIFPS+I MFIAIPSFALLYSMDEVVVDPA+TIK
Sbjct: 136 ALWHFHYKENAIPQRIVHGTTIEILRTIFPSLISMFIAIPSFALLYSMDEVVVDPAITIK 195

Query: 160 AIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRII 219
           AIGHQWY TYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDNRVV+PAKTHLRII
Sbjct: 196 AIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDNRVVVPAKTHLRII 255

Query: 220 VTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNI 279
           VT ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNI
Sbjct: 256 VTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNI 315

Query: 280 GRLLSPLWLSRTTRGASHPRSKLL 304
           GRLLSPLWLSRTTRG   P  + +
Sbjct: 316 GRLLSPLWLSRTTRGCEPPEKQAI 339

[Close]

BLAST of Lsi03G006320 vs. TrEMBL
Match: A0A078I7Z7_BRANA (Cytochrome c oxidase subunit 2 OS=Brassica napus GN=BnaCnng12780D PE=3 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 7.7e-133
Identity = 237/263 (90.11%), Postives = 247/263 (93.92%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVLKWLFLTI+PCDAAEPWQLGSQDAATP+MQGIIDLHHDIFFFLILI VFV  ILVRA
Sbjct: 1   MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHY++N IPQRIVHGTTIEIL TIFPS+I MFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYKENAIPQRIVHGTTIEILRTIFPSLISMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWY TYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDNRVV+PAKTHLRIIV
Sbjct: 121 IGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDNRVVVPAKTHLRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG 280
           T ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGN G
Sbjct: 181 TSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNRG 240

Query: 281 RLLSPLWLSRTTRGASHPRSKLL 304
           RLLSPLWLSRTTRG   P  + +
Sbjct: 241 RLLSPLWLSRTTRGCEPPEKQAI 263

[Close]

BLAST of Lsi03G006320 vs. TAIR10
Match: ATMG00160.1 (ATMG00160.1 cytochrome oxidase 2)

HSP 1 Score: 445.3 bits (1144), Expect = 5.3e-125
Identity = 219/233 (93.99%), Postives = 225/233 (96.57%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVLKWLFLTI+PCDAAEPWQLGSQDAATP+MQGIIDLHHDIFFFLILI VFV  ILVRA
Sbjct: 1   MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHY+KN IPQRIVHGTTIEIL TIFPSII MFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYKKNAIPQRIVHGTTIEILRTIFPSIISMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWYRTYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDNRVV+PAKTHLRIIV
Sbjct: 121 IGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDNRVVVPAKTHLRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFT 274
           T ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFT
Sbjct: 181 TSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFT 233

[Close]

BLAST of Lsi03G006320 vs. TAIR10
Match: AT2G07695.1 (AT2G07695.1 Cytochrome C oxidase subunit II-like, transmembrane domain)

HSP 1 Score: 179.9 bits (455), Expect = 4.1e-45
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVLKWLFLTI+PCDAAEPWQLGSQDAATP+MQGIIDLHHDIFFFLILI VFV  ILVRA
Sbjct: 1   MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFAL 144
           LWHFHY+KN IPQRIVHGTTIEIL TIFP  I +FI  PSFAL
Sbjct: 61  LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSFAL 103

[Close]

BLAST of Lsi03G006320 vs. TAIR10
Match: ATMG01280.1 (ATMG01280.1 Cytochrome C oxidase subunit II-like, transmembrane domain)

HSP 1 Score: 179.9 bits (455), Expect = 4.1e-45
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVLKWLFLTI+PCDAAEPWQLGSQDAATP+MQGIIDLHHDIFFFLILI VFV  ILVRA
Sbjct: 1   MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFAL 144
           LWHFHY+KN IPQRIVHGTTIEIL TIFP  I +FI  PSFAL
Sbjct: 61  LWHFHYKKNAIPQRIVHGTTIEILRTIFPCFISIFIVEPSFAL 103

[Close]

BLAST of Lsi03G006320 vs. NCBI nr
Match: gi|1009175132|ref|XP_015868714.1| (PREDICTED: uncharacterized protein LOC107406125 [Ziziphus jujuba])

HSP 1 Score: 598.2 bits (1541), Expect = 1.4e-167
Identity = 296/320 (92.50%), Postives = 304/320 (95.00%), Query Frame = 1


Query: 8   KDSHAFLGWTNPTGDFRLPELGEQE-----------QSKNKPNKMIVLKWLFLTIAPCDA 67
           K+SH FLGWT+PTGDFRLPELGEQE           QSKN PNKMIVL+WLFLTIAPCDA
Sbjct: 310 KNSHVFLGWTSPTGDFRLPELGEQEQVSLHFWGRAEQSKNAPNKMIVLEWLFLTIAPCDA 369

Query: 68  AEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYQKNPIPQRIV 127
           AEPWQLGSQDAATPMMQGI+DLHHDIFFFLILI VFVSRILVRALWHFHY+KNPIPQRIV
Sbjct: 370 AEPWQLGSQDAATPMMQGIMDLHHDIFFFLILILVFVSRILVRALWHFHYKKNPIPQRIV 429

Query: 128 HGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNS 187
           HGTTIEIL TIFPSIIPMFIAIPSFALLYSMDEVVVDPA+TIKAIGHQWYRTYEYSDYNS
Sbjct: 430 HGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYRTYEYSDYNS 489

Query: 188 SDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPADVPHSWAVPSSGV 247
           SDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVV+PAKTHLRIIVTPADVPHSWAVPSSGV
Sbjct: 490 SDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVPAKTHLRIIVTPADVPHSWAVPSSGV 549

Query: 248 KCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIGRLLSPLWLSRTTRGAS 307
           KCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAFTRAPGNIGRLLSPLWLSRTTRGAS
Sbjct: 550 KCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTRAPGNIGRLLSPLWLSRTTRGAS 609

Query: 308 HPRSKLLQRAAGAVGSRGAK 317
           HPRSKLLQRAAGAVGSRGA+
Sbjct: 610 HPRSKLLQRAAGAVGSRGAR 629

[Close]

BLAST of Lsi03G006320 vs. NCBI nr
Match: gi|823127461|ref|XP_012436100.1| (PREDICTED: cytochrome c oxidase subunit 2 [Gossypium raimondii])

HSP 1 Score: 542.0 bits (1395), Expect = 1.2e-150
Identity = 268/285 (94.04%), Postives = 276/285 (96.84%), Query Frame = 1


Query: 32  EQSKNKPNKMIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFV 91
           EQ KN+ N+MIVL+WLFLTIA CDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI V
Sbjct: 145 EQKKNETNQMIVLEWLFLTIAACDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILV 204

Query: 92  FVSRILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVV 151
           FV RILVRALWHFHYQKNPIPQRIVHGTTIEIL TIFPSIIPMFIAIPSFALLYSMDEVV
Sbjct: 205 FVLRILVRALWHFHYQKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVV 264

Query: 152 VDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLP 211
           VDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVV+P
Sbjct: 265 VDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVP 324

Query: 212 AKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHA 271
           AKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHA
Sbjct: 325 AKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHA 384

Query: 272 FTRAPGNIGRLLSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAK 317
           FTRAPGNIGRLLSPLWLSRTTRGA+HPRSKLLQRAAGAVGS+GA+
Sbjct: 385 FTRAPGNIGRLLSPLWLSRTTRGATHPRSKLLQRAAGAVGSQGAR 429

[Close]

BLAST of Lsi03G006320 vs. NCBI nr
Match: gi|763742242|gb|KJB09741.1| (hypothetical protein B456_001G161700 [Gossypium raimondii])

HSP 1 Score: 530.8 bits (1366), Expect = 2.7e-147
Identity = 267/288 (92.71%), Postives = 274/288 (95.14%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVL+WLFLTIA CDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI VFV RILVRA
Sbjct: 1   MIVLEWLFLTIAACDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILVFVLRILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHYQKNPIPQRIVHGTTIEIL TIFPSIIPMFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYQKNPIPQRIVHGTTIEILRTIFPSIIPMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVV+PAKTHLRIIV
Sbjct: 121 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVVPAKTHLRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG 280
           T ADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEICGTNHAFTRAPGNIG
Sbjct: 181 TSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFTRAPGNIG 240

Query: 281 RLLSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAKLGQAPGGAEETP 329
           RLLSPLWLSRTTRGA+HPRSKLLQRAAGAVGS+G+K      G +ETP
Sbjct: 241 RLLSPLWLSRTTRGATHPRSKLLQRAAGAVGSQGSK---QVLGMDETP 285

[Close]

BLAST of Lsi03G006320 vs. NCBI nr
Match: gi|157102082|gb|ABV23661.1| (cytochrome oxidase subunit 2 [Boehmeria nivea])

HSP 1 Score: 516.5 bits (1329), Expect = 5.3e-143
Identity = 260/285 (91.23%), Postives = 267/285 (93.68%), Query Frame = 1


Query: 32  EQSKNKPNKMIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFV 91
           EQSK+KP KMI+   LFLTI+PCDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLILI V
Sbjct: 24  EQSKSKPQKMIL--GLFLTISPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILILV 83

Query: 92  FVSRILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVV 151
           FV  ILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSII MFIAIPSFALLYSMDEVV
Sbjct: 84  FVLWILVRALWHFHYQKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVV 143

Query: 152 VDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLP 211
           VDPA+TIKAIGHQWY TYEYSDYNSSDEQSLTFDSY IPEDDLELGQ RLLEVDNRVV+P
Sbjct: 144 VDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEDDLELGQLRLLEVDNRVVVP 203

Query: 212 AKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHA 271
           AKTHLR IVT ADV HSWAVPS GVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHA
Sbjct: 204 AKTHLRFIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHA 263

Query: 272 FTRAPGNIGRLLSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAK 317
           F RAPGNIGR+ SPLWLSRTTRGASHPRSKLLQRAAGAVGSRGA+
Sbjct: 264 FMRAPGNIGRVPSPLWLSRTTRGASHPRSKLLQRAAGAVGSRGAR 306

[Close]

BLAST of Lsi03G006320 vs. NCBI nr
Match: gi|992329677|ref|YP_009228076.1| (cytochrome c oxidase subunit 2-1 (mitochondrion) [Brassica nigra])

HSP 1 Score: 488.0 bits (1255), Expect = 2.0e-134
Identity = 239/263 (90.87%), Postives = 249/263 (94.68%), Query Frame = 1


Query: 41  MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRA 100
           MIVLKWLFLTI+PCDAAEPWQLGSQDAATP+MQGIIDLHHDIFFFLILI VFV  ILVRA
Sbjct: 1   MIVLKWLFLTISPCDAAEPWQLGSQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRA 60

Query: 101 LWHFHYQKNPIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKA 160
           LWHFHY++N IPQRIVHGTTIEIL TIFPS+I MFIAIPSFALLYSMDEVVVDPA+TIKA
Sbjct: 61  LWHFHYKENAIPQRIVHGTTIEILRTIFPSLISMFIAIPSFALLYSMDEVVVDPAITIKA 120

Query: 161 IGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIV 220
           IGHQWYRTYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDNRVV+PAKTHLRIIV
Sbjct: 121 IGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDNRVVVPAKTHLRIIV 180

Query: 221 TPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG 280
           T ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG
Sbjct: 181 TSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIG 240

Query: 281 RLLSPLWLSRTTRGASHPRSKLL 304
           RLLSPLWLSRTTRG   P  + +
Sbjct: 241 RLLSPLWLSRTTRGCEPPEKQAI 263

The following BLAST results are available for this feature:

BLAST of Lsi03G006320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COX2_SOYBN	1.7e-125	96.07	Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2	[more]
COX2_PEA	7.2e-124	95.20	Cytochrome c oxidase subunit 2 OS=Pisum sativum GN=COX2 PE=3 SV=2	[more]
COX2_DAUCA	4.3e-121	95.13	Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1	[more]
COX2_BETVU	2.2e-120	91.81	Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1	[more]
COX2_ARATH	6.3e-120	91.81	Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana GN=COX2 PE=2 SV=2	[more]

BLAST of Lsi03G006320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2PZL7_GOSRA	1.9e-147	92.71	Cytochrome c oxidase subunit 2 OS=Gossypium raimondii GN=B456_001G161700 PE=3 SV...	[more]
B5KXY8_BOENI	3.7e-143	91.23	Cytochrome c oxidase subunit 2 OS=Boehmeria nivea GN=cox2 PE=3 SV=1	[more]
A0A0U1YIQ9_BRANI	1.4e-134	90.87	Cytochrome c oxidase subunit 2 OS=Brassica nigra GN=cox2-1 PE=3 SV=1	[more]
A0A023VX25_BRAJU	3.1e-134	90.53	Cytochrome c oxidase subunit 2 OS=Brassica juncea var. tumida GN=cox2-1 PE=3 SV=...	[more]
A0A078I7Z7_BRANA	7.7e-133	90.11	Cytochrome c oxidase subunit 2 OS=Brassica napus GN=BnaCnng12780D PE=3 SV=1	[more]

BLAST of Lsi03G006320 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00160.1	5.3e-125	93.99	ATMG00160.1 cytochrome oxidase 2	[more]
AT2G07695.1	4.1e-45	86.41	Cytochrome C oxidase subunit II-like, transmembrane domain	[more]
ATMG01280.1	4.1e-45	86.41	ATMG01280.1 Cytochrome C oxidase subunit II-like, transmembrane domain	[more]

BLAST of Lsi03G006320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009175132\|ref\|XP_015868714.1\|	1.4e-167	92.50	PREDICTED: uncharacterized protein LOC107406125 [Ziziphus jujuba]	[more]
gi\|823127461\|ref\|XP_012436100.1\|	1.2e-150	94.04	PREDICTED: cytochrome c oxidase subunit 2 [Gossypium raimondii]	[more]
gi\|763742242\|gb\|KJB09741.1\|	2.7e-147	92.71	hypothetical protein B456_001G161700 [Gossypium raimondii]	[more]
gi\|157102082\|gb\|ABV23661.1\|	5.3e-143	91.23	cytochrome oxidase subunit 2 [Boehmeria nivea]	[more]
gi\|992329677\|ref\|YP_009228076.1\|	2.0e-134	90.87	cytochrome c oxidase subunit 2-1 (mitochondrion) [Brassica nigra]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0022900	electron transport chain

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005507	copper ion binding
GO:0004129	cytochrome-c oxidase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011759	Cyt_c_oxidase_su2_TM_dom
IPR008972	Cupredoxin
IPR002429	CcO_II-like_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045277	respiratory chain complex IV
cellular_component	GO:0016020	membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004129	cytochrome-c oxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006320.1	Lsi03G006320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002429	Cytochrome c oxidase subunit II C-terminal	PFAM	PF00116	COX2	coord: 156..272 score: 2.5
IPR002429	Cytochrome c oxidase subunit II C-terminal	PROFILE	PS50857	COX2_CUA	coord: 153..293 score: 3
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 153..273 score: 1.3
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 153..272 score: 7.02
IPR011759	Cytochrome C oxidase subunit II, transmembrane domain	GENE3D	G3DSA:1.10.287.90		coord: 57..150 score: 4.9
IPR011759	Cytochrome C oxidase subunit II, transmembrane domain	PFAM	PF02790	COX2_TM	coord: 57..143 score: 8.9
IPR011759	Cytochrome C oxidase subunit II, transmembrane domain	PROFILE	PS50999	COX2_TM	coord: 56..151 score: 24
IPR011759	Cytochrome C oxidase subunit II, transmembrane domain	unknown	SSF81464	Cytochrome c oxidase subunit II-like, transmembrane region	coord: 47..150 score: 5.07
None	No IPR available	PRINTS	PR01166	CYCOXIDASEII	coord: 224..244 score: 1.1E-56coord: 117..129 score: 1.1E-56coord: 244..261 score: 1.1E-56coord: 262..279 score: 1.1E-56coord: 200..221 score: 1.1E-56coord: 129..149 score: 1.1E-56coord: 152..171 score: 1.1
None	No IPR available	PANTHER	PTHR22888	CYTOCHROME C OXIDASE, SUBUNIT II	coord: 41..272 score: 8.8E
None	No IPR available	PANTHER	PTHR22888:SF9	CYTOCHROME C OXIDASE SUBUNIT 2	coord: 41..272 score: 8.8E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006320	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G006320	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006320	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006320	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006320	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G006320	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006320	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006320	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006320	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006320	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006320	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006320	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006320	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006320	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006320	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006320	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006320	Watermelon (97103) v1	lsiwmB269
Lsi03G006320	Watermelon (97103) v1	lsiwmB245
Lsi03G006320	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006320	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006320	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G006320	Watermelon (97103) v2	lsiwmbB226
Lsi03G006320	Wax gourd	lsiwgoB307
Lsi03G006320	Wax gourd	lsiwgoB320