Lsi03G006310 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	30S ribosomal protein S10
Location	chr03 : 7841411 .. 7842214 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTAGCATTTCCTATAAATTGAGATAGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGAGTAGGAGTAGGAGCTAGCCTGCCTTTCTTTTTTTCATATTTCTGCAACAGGATAAAGGAAACCGATTGAGAAACTTGCATGGGACTGGCTATTCACTCACTTTTTTCTGCTAATGTGCAGCGGCGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAGTAAGTGAAGGACCCCTGTAGGGCCTTGAAGAAGTGTGGCCCACACACGGCCAGGGAGGAAAGAAAAGGGAGGGGGATAAGGAGAGCCTTAGCCCTGAAAATCGAATTATAAACCGGCGTGGCGCTGCTGGATGCTTCTGATCAATAGAACAGGAAGAGGAGTCAGCCAAAAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATAACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA

mRNA sequence

ATGGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGACGGCGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAAACAGGAAGAGGAGTCAGCCAAAAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATAACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA

Coding sequence (CDS)

ATGGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGACGGCGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAAACAGGAAGAGGAGTCAGCCAAAAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATAACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA

Protein sequence

MGAFSSKDRGELFHYTMTTTNEGPTTMKEEKDGEEPTGCWTNLWCVPAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT

Homology

[Close]

BLAST of Lsi03G006310 vs. Swiss-Prot
Match: RT10_PEA (Ribosomal protein S10, mitochondrial OS=Pisum sativum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.4e-34
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1


Query: 81  TTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIK 140
           TTKIRIVIRSFD+PF ENHF GLPPYT KIGLPESRV YTVLRSPHIDKKSREQFEMEIK
Sbjct: 2   TTKIRIVIRSFDHPFLENHFGGLPPYTWKIGLPESRVLYTVLRSPHIDKKSREQFEMEIK 61

Query: 141 KQFLVIKTERHELRKKFFRLKRR 164
           K++LVIKTE+HELRKKFF LKR+
Sbjct: 62  KKYLVIKTEKHELRKKFFWLKRQ 84

[Close]

BLAST of Lsi03G006310 vs. Swiss-Prot
Match: RT10_ARATH (40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 47  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPY 106
           P  R+ +  ++E A            +E   K+  TKI I IRSF NP  E   W LPP+
Sbjct: 105 PLSRKEIALQKEAA------------EESTSKIKGTKICIAIRSFVNP--EKQAWCLPPH 164

Query: 107 TRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 163
           TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Sbjct: 165 TRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHELSKKLFWLKR 206

[Close]

BLAST of Lsi03G006310 vs. Swiss-Prot
Match: RT10_MARPO (Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha GN=RPS10 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-16
Identity = 52/81 (64.20%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 81  TTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIK 140
           T KI IVI+SF     EN   GL   TRKIGLP+ +  YTVLRSPHIDKKSREQFEM I 
Sbjct: 2   TAKICIVIKSF-----ENQRSGLLLNTRKIGLPKKQTLYTVLRSPHIDKKSREQFEMRIH 61

Query: 141 KQFLVIKTERHELRKKFFRLK 162
           KQ LVI+TE H+LR+K   LK
Sbjct: 62  KQLLVIETETHKLREKLNWLK 77

[Close]

BLAST of Lsi03G006310 vs. Swiss-Prot
Match: RS10_SYNFM (30S ribosomal protein S10 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.3e-06
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1


Query: 79  VTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKK 138
           +T  +IRI ++++D+   +     +    +K G        LP     YTVLRSPH+DKK
Sbjct: 2   MTNQRIRIRLKAYDHKLLDQSTSEIVMTAKKTGARVAGPIPLPTKIHRYTVLRSPHVDKK 61

Query: 139 SREQFEMEIKKQFLVI 147
           SREQFE+ + K+ + I
Sbjct: 62  SREQFEIRVHKRLIDI 77

[Close]

BLAST of Lsi03G006310 vs. Swiss-Prot
Match: RS10_BDEBA (30S ribosomal protein S10 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.4e-06
Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 1


Query: 83  KIRIVIRSFDNPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQ 142
           KIRI +++FD+   +     +    R+ G        LP     YTVLRSPH+DKKSREQ
Sbjct: 5   KIRIRLKAFDHKLLDQSTKEIVETARRTGAKVAGPIPLPTRINRYTVLRSPHVDKKSREQ 64

Query: 143 FEMEIKKQFLVI 147
           FE+   K+ L I
Sbjct: 65  FEVRTHKRMLDI 76

[Close]

BLAST of Lsi03G006310 vs. TrEMBL
Match: A0A151UHR2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047737 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHF GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFGGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+FL+IKTE+HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKFLIIKTEKHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi03G006310 vs. TrEMBL
Match: V9PBK4_VACMA (Ribosomal protein S10 OS=Vaccinium macrocarpon GN=rps10 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-44
Identity = 95/105 (90.48%), Postives = 99/105 (94.29%), Query Frame = 1


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++ G GVSQKERPPKVTTTKIRIVIRSFD+PFFENH WGLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRRGIGVSQKERPPKVTTTKIRIVIRSFDHPFFENHCWGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+FLVIKTE HELRKK FRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKFLVIKTETHELRKKLFRLKRRATRRT 109

[Close]

BLAST of Lsi03G006310 vs. TrEMBL
Match: O99866_SOLTU (Ribosomal protein subunit 10 OS=Solanum tuberosum GN=rps10 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-40
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 68  RGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHI 127
           R VSQKERPPKVTTTKI IVIRSFD+PF ENHFWGLPPYTRKIGLPESRV YTVLRSPHI
Sbjct: 8   RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLRSPHI 67

Query: 128 DKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 163
           DKKSREQF M+IKK+FLVIKTERHELRKKFFRLKR
Sbjct: 68  DKKSREQFFMKIKKEFLVIKTERHELRKKFFRLKR 102

[Close]

BLAST of Lsi03G006310 vs. TrEMBL
Match: Q36552_SOLTU (Ribosomal protein S10 OS=Solanum tuberosum GN=rps10 PE=4 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-40
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 68  RGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHI 127
           R VSQKERPPKVTTTKI IVIRSFD+PF ENHFWGLPPYTRKIGLPESRV YTVLRSPHI
Sbjct: 8   RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLRSPHI 67

Query: 128 DKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR 164
           DKKSREQF M+IKK+FLVIKTERHELRKKFFRLKR+
Sbjct: 68  DKKSREQFFMKIKKEFLVIKTERHELRKKFFRLKRQ 103

[Close]

BLAST of Lsi03G006310 vs. TrEMBL
Match: Q70G78_9SOLN (Ribosomal protein S10 OS=Solanum commersonii x Solanum tuberosum GN=rps10 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-40
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 68  RGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHI 127
           R VSQKERPPKVTTTKI IVIRSFD+PF ENHFWGLPPYTRKIGLPESRV YTVLRSPHI
Sbjct: 8   RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLRSPHI 67

Query: 128 DKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR 164
           DKKSREQF M+IKK+FLVIKTERHELRKKFFRLKR+
Sbjct: 68  DKKSREQFFMKIKKEFLVIKTERHELRKKFFRLKRQ 103

[Close]

BLAST of Lsi03G006310 vs. TAIR10
Match: AT3G22300.1 (AT3G22300.1 ribosomal protein S10)

HSP 1 Score: 107.5 bits (267), Expect = 8.4e-24
Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 47  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPY 106
           P  R+ +  ++E A            +E   K+  TKI I IRSF NP  E   W LPP+
Sbjct: 105 PLSRKEIALQKEAA------------EESTSKIKGTKICIAIRSFVNP--EKQAWCLPPH 164

Query: 107 TRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 163
           TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Sbjct: 165 TRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHELSKKLFWLKR 206

[Close]

BLAST of Lsi03G006310 vs. NCBI nr
Match: gi|720100555|ref|XP_010248289.1| (PREDICTED: ribosomal protein S10, mitochondrial [Nelumbo nucifera])

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-46
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 1


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKE PPKVTTTKIRIVIRSFD+PF ENHFWGLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKETPPKVTTTKIRIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKKQFLVIKTE HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKQFLVIKTETHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi03G006310 vs. NCBI nr
Match: gi|1012317801|gb|KYP31509.1| (hypothetical protein KK1_048135 [Cajanus cajan])

HSP 1 Score: 193.7 bits (491), Expect = 2.5e-46
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHF GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFGGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+FL+IKTE+HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKFLIIKTEKHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi03G006310 vs. NCBI nr
Match: gi|731439119|ref|XP_010646576.1| (PREDICTED: LOW QUALITY PROTEIN: ribosomal protein S10, mitochondrial [Vitis vinifera])

HSP 1 Score: 189.1 bits (479), Expect = 6.2e-45
Identity = 94/100 (94.00%), Postives = 97/100 (97.00%), Query Frame = 1


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFD+PFFENHFWGLPPYTRKIGLPES V YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESXVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR 164
           SPHIDKKSREQFEMEIKKQFLVIKTE HELRKKFFRLKRR
Sbjct: 65  SPHIDKKSREQFEMEIKKQFLVIKTETHELRKKFFRLKRR 104

[Close]

BLAST of Lsi03G006310 vs. NCBI nr
Match: gi|576303567|ref|YP_008999584.1| (ribosomal protein S10 (mitochondrion) [Vaccinium macrocarpon])

HSP 1 Score: 187.2 bits (474), Expect = 2.4e-44
Identity = 95/105 (90.48%), Postives = 99/105 (94.29%), Query Frame = 1


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++ G GVSQKERPPKVTTTKIRIVIRSFD+PFFENH WGLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRRGIGVSQKERPPKVTTTKIRIVIRSFDHPFFENHCWGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+FLVIKTE HELRKK FRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKFLVIKTETHELRKKLFRLKRRATRRT 109

[Close]

BLAST of Lsi03G006310 vs. NCBI nr
Match: gi|723744631|ref|XP_010313230.1| (PREDICTED: ribosomal protein S10, mitochondrial [Solanum lycopersicum])

HSP 1 Score: 177.2 bits (448), Expect = 2.4e-41
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 1


Query: 68  RGVSQKERPPKVTTTKIRIVIRSFDNPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHI 127
           R VSQKERPPKVTTTKI IVIRSFD+PF ENHFWGLPP TRKIGLPESRV YTVLRSPHI
Sbjct: 8   RRVSQKERPPKVTTTKIGIVIRSFDHPFLENHFWGLPPNTRKIGLPESRVLYTVLRSPHI 67

Query: 128 DKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           DKKSREQF M+IKK+FLVIK ERHELRKKFFRLKRRATRRT
Sbjct: 68  DKKSREQFFMKIKKEFLVIKIERHELRKKFFRLKRRATRRT 108

The following BLAST results are available for this feature:

BLAST of Lsi03G006310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT10_PEA	6.4e-34	87.95	Ribosomal protein S10, mitochondrial OS=Pisum sativum GN=RPS10 PE=2 SV=1	[more]
RT10_ARATH	1.5e-22	51.72	40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana GN=RPS10 PE=2 S...	[more]
RT10_MARPO	2.1e-16	64.20	Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha GN=RPS10 PE=3 SV=2	[more]
RS10_SYNFM	4.3e-06	36.84	30S ribosomal protein S10 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MP...	[more]
RS10_BDEBA	7.4e-06	41.67	30S ribosomal protein S10 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM...	[more]

BLAST of Lsi03G006310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151UHR2_CAJCA	1.8e-46	92.38	Uncharacterized protein OS=Cajanus cajan GN=KK1_047737 PE=4 SV=1	[more]
V9PBK4_VACMA	1.6e-44	90.48	Ribosomal protein S10 OS=Vaccinium macrocarpon GN=rps10 PE=4 SV=1	[more]
O99866_SOLTU	1.9e-40	91.58	Ribosomal protein subunit 10 OS=Solanum tuberosum GN=rps10 PE=4 SV=1	[more]
Q36552_SOLTU	2.5e-40	90.63	Ribosomal protein S10 OS=Solanum tuberosum GN=rps10 PE=4 SV=2	[more]
Q70G78_9SOLN	2.5e-40	90.63	Ribosomal protein S10 OS=Solanum commersonii x Solanum tuberosum GN=rps10 PE=4 S...	[more]

BLAST of Lsi03G006310 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22300.1	8.4e-24	51.72	ribosomal protein S10	[more]

BLAST of Lsi03G006310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|720100555\|ref\|XP_010248289.1\|	1.1e-46	93.33	PREDICTED: ribosomal protein S10, mitochondrial [Nelumbo nucifera]	[more]
gi\|1012317801\|gb\|KYP31509.1\|	2.5e-46	92.38	hypothetical protein KK1_048135 [Cajanus cajan]	[more]
gi\|731439119\|ref\|XP_010646576.1\|	6.2e-45	94.00	PREDICTED: LOW QUALITY PROTEIN: ribosomal protein S10, mitochondrial [Vitis vini...	[more]
gi\|576303567\|ref\|YP_008999584.1\|	2.4e-44	90.48	ribosomal protein S10 (mitochondrion) [Vaccinium macrocarpon]	[more]
gi\|723744631\|ref\|XP_010313230.1\|	2.4e-41	90.10	PREDICTED: ribosomal protein S10, mitochondrial [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR027486	Ribosomal_S10_dom
IPR001848	Ribosomal_S10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006412	translation
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006310.1	Lsi03G006310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 83..96 score: 2.9E-9coord: 110..125 score: 2.9E-9coord: 131..145 score: 2.
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 68..162 score: 1.7
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 83..162 score: 2.3
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 109..159 score: 1.0
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 85..161 score: 0.
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 83..161 score: 1.83
None	No IPR available	PANTHER	PTHR11700:SF7	40S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL	coord: 68..162 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006310	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006310	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006310	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006310	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006310	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006310	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006310	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006310	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006310	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006310	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006310	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006310	Watermelon (97103) v1	lsiwmB269
Lsi03G006310	Watermelon (97103) v1	lsiwmB245
Lsi03G006310	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006310	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006310	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G006310	Watermelon (97103) v2	lsiwmbB226
Lsi03G006310	Wax gourd	lsiwgoB307
Lsi03G006310	Wax gourd	lsiwgoB320
Lsi03G006310	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G006310	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006310	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006310	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006310	Cucurbita maxima (Rimu)	cmalsiB662