Lsi03G006300 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 7836228 .. 7837412 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGGGCTTTGGTCTGCTTCCTTCTTTTCTTTTGAATCACAGGAAATGATTCAATCTCGAACTGGGCCTGACTATTCAGTTGAAGTGAGAGTTGGTTCAACTATCGAGGATAGAAATTTTGAGGAATTTTTTCAAGACTGCCGTCTTTGCTAGTAAGTGGATCGGAACGCTAACGGCGAGGTGCCAACTAACCTTTGTCCCTGTCCCTCAATCAATCAATGGGGCAAGTCGAGGCATGTCTTCTTTCTTTCAAGCAAGAAAGAGTTAGCTCCTTTCTCTGAAAGATGAGGAGAACAACGTCGAAAGGGTTGGACCTGGCCTGCCTACAACCAAAGCGTTAGAAGCCCTTAATTAAGGAGGCCTTTAGTAAATCTGGAGTGTTCCCTAGCTTGATTCTTTCTTTGCTTCCGTCGCTCAGTGCATCCCTACTACCGCCCCTGACAAACTTTCTGTCTAACTGTCGAGATCTCTTGCTCGGTGTGCTCGTTACTCGTTTAGCGAGTCAAGTCAGTAATTTTTCCTCAGCGTTTCGTTTCTAAGCTAGGTTACCAGAGCTTGGGGATTTTGTTTAGTTAGTAAGGGAGTAGGCAGGGGGGGAGTCAAAGGGTGGGAATAGATTGTAGTGAATTGTGGGAGTTTCTAAGGAAAGCTATCTTCTCAAAGTCAAATCTTCAAAAGGATGGAGTTCCAGCAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGGTATCGCGACTCCATCCGCCTATTGTCTTCTTCTTTGAGTTTCGCCTGTTTTCTATCGTCTCGACTTTATTTAGAAGCCTAGCACAACTAACAGAGGAAACTTCTTGTCTGTAACGAACGAAAGAACCAAGGGCTATTACTCGAATCCCGGGCTCAAAGGGCATTCGATGGTCTTCGAGATGGTCTATCTAGTTCCATTCCAGAGGGATCGATTGTCATGTCTGAGGAATTACAAGTGGACGATTAA

mRNA sequence

ATGCGAGGGCTTTGGTCTGCTTCCTTCTTTTCTTTTGAATCACAGGAAATGATTCAATCTCGAACTGGGCCTGACTATTCAGTTGAACGAGTCAAGTCAGTAATTTTTCCTCAGCGTTTCGTTTCTAAGCTAGGTTACCAGAGCTTGGGGATTTTGTTTAGTTACAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGAGGAAACTTCTTGTCTGTAACGAACGAAAGAACCAAGGGCTATTACTCGAATCCCGGGCTCAAAGGGCATTCGATGGTCTTCGAGATGGTCTATCTAGTTCCATTCCAGAGGGATCGATTGTCATGTCTGAGGAATTACAAGTGGACGATTAA

Coding sequence (CDS)

ATGCGAGGGCTTTGGTCTGCTTCCTTCTTTTCTTTTGAATCACAGGAAATGATTCAATCTCGAACTGGGCCTGACTATTCAGTTGAACGAGTCAAGTCAGTAATTTTTCCTCAGCGTTTCGTTTCTAAGCTAGGTTACCAGAGCTTGGGGATTTTGTTTAGTTACAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACCAAGGGGGATCTTTCGATCACTCTGTTAGATCCAAGGCACGTCTTCATCAAGCTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGCTGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGAGGAAACTTCTTGTCTGTAACGAACGAAAGAACCAAGGGCTATTACTCGAATCCCGGGCTCAAAGGGCATTCGATGGTCTTCGAGATGGTCTATCTAGTTCCATTCCAGAGGGATCGATTGTCATGTCTGAGGAATTACAAGTGGACGATTAA

Protein sequence

MRGLWSASFFSFESQEMIQSRTGPDYSVERVKSVIFPQRFVSKLGYQSLGILFSYKTLSKDEDGSSGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIWRKLLVCNERKNQGLLLESRAQRAFDGLRDGLSSSIPEGSIVMSEELQVDD

Homology

[Close]

BLAST of Lsi03G006300 vs. TrEMBL
Match: B9T8X7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1985510 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 66  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV 117
           SGVRS+ELAYQG SFDHSVRSKARLHQALEQR+YA   KEKFLIEGLM RV
Sbjct: 67  SGVRSQELAYQGRSFDHSVRSKARLHQALEQRKYA--LKEKFLIEGLMLRV 115

[Close]

BLAST of Lsi03G006300 vs. TrEMBL
Match: B9T143_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0439640 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.5e-10
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 66  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV 117
           S V S+ELAYQ  SF+HSVRSK RLHQALEQR+Y+ K+KE FLIEGLM R+
Sbjct: 224 SRVCSQELAYQRRSFNHSVRSKTRLHQALEQRKYSLKDKENFLIEGLMLRI 274

[Close]

BLAST of Lsi03G006300 vs. NCBI nr
Match: gi|223524741|gb|EEF27682.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 66  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV 117
           SGVRS+ELAYQG SFDHSVRSKARLHQALEQR+YA   KEKFLIEGLM RV
Sbjct: 67  SGVRSQELAYQGRSFDHSVRSKARLHQALEQRKYA--LKEKFLIEGLMLRV 115

[Close]

BLAST of Lsi03G006300 vs. NCBI nr
Match: gi|223528385|gb|EEF30423.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 72.4 bits (176), Expect = 9.4e-10
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 66  SGVRSKELAYQGGSFDHSVRSKARLHQALEQRRYAPKNKEKFLIEGLMFRV 117
           S V S+ELAYQ  SF+HSVRSK RLHQALEQR+Y+ K+KE FLIEGLM R+
Sbjct: 224 SRVCSQELAYQRRSFNHSVRSKTRLHQALEQRKYSLKDKENFLIEGLMLRI 274

The following BLAST results are available for this feature:

BLAST of Lsi03G006300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G006300 vs. TrEMBL


Match Name	E-value	Identity	Description
B9T8X7_RICCO	1.4e-12	86.27	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1985510 PE=4 SV=1	[more]
B9T143_RICCO	6.5e-10	72.55	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0439640 PE=4 SV=1	[more]

BLAST of Lsi03G006300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G006300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223524741\|gb\|EEF27682.1\|	2.0e-12	86.27	conserved hypothetical protein [Ricinus communis]	[more]
gi\|223528385\|gb\|EEF30423.1\|	9.4e-10	72.55	conserved hypothetical protein [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006300.1	Lsi03G006300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006300	Wax gourd	lsiwgoB307
Lsi03G006300	Wax gourd	lsiwgoB320
Lsi03G006300	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G006300	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006300	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006300	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006300	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G006300	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006300	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006300	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006300	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006300	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006300	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006300	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006300	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006300	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006300	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006300	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006300	Watermelon (97103) v1	lsiwmB269
Lsi03G006300	Watermelon (97103) v1	lsiwmB245
Lsi03G006300	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006300	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006300	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G006300	Watermelon (97103) v2	lsiwmbB226