Lsi03G006200 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cysteine-rich venom protein
Location	chr03 : 7719627 .. 7720106 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTTGCTAATGTTCTCTCCGCCCTTTGCGTGTTTGCGCTAACCCTAACCCCCATCGTCGTTGCTCAAAACAACCCTGATGACTTCGTCAACGCGCACAATGCGGTTCGAGCCAAGGTCGGGGCTGAACCCCTCTATTGGGACGAGGAACTCGCAACTTATGCTAAAAATTACATCACGTCGAAGATTAAAACTTGTGAAATGGTGCATTCCAAAGGCCCTTATGGCGAGAACTTGGCAACGGTAAACGGCGAGTTGACCGCGGCGGCTGCCGTGAATGCATGGGCAGATGAGAAGAAGTACTATAATCACAACTCCAACAAATGTGTGGGGGGCGAGTGCCGACATTATACACAATTGGTGTGGAAAAATAGTTTTTTGGTGGGTTGTGCTAGTGTTAAATGCAAAAACAATTGGTCTTTAGTCTCATGCAACTATAGTCCTTCTGGTAATGTTGTTGGTGAGCTACCTTATTAG

mRNA sequence

ATGGCACTTGCTAATGTTCTCTCCGCCCTTTGCGTGTTTGCGCTAACCCTAACCCCCATCGTCGTTGCTCAAAACAACCCTGATGACTTCGTCAACGCGCACAATGCGGTTCGAGCCAAGGTCGGGGCTGAACCCCTCTATTGGGACGAGGAACTCGCAACTTATGCTAAAAATTACATCACGTCGAAGATTAAAACTTGTGAAATGGTGCATTCCAAAGGCCCTTATGGCGAGAACTTGGCAACGGTAAACGGCGAGTTGACCGCGGCGGCTGCCGTGAATGCATGGGCAGATGAGAAGAAGTACTATAATCACAACTCCAACAAATGTGTGGGGGGCGAGTGCCGACATTATACACAATTGGTGTGGAAAAATAGTTTTTTGGTGGGTTGTGCTAGTGTTAAATGCAAAAACAATTGGTCTTTAGTCTCATGCAACTATAGTCCTTCTGGTAATGTTGTTGGTGAGCTACCTTATTAG

Coding sequence (CDS)

ATGGCACTTGCTAATGTTCTCTCCGCCCTTTGCGTGTTTGCGCTAACCCTAACCCCCATCGTCGTTGCTCAAAACAACCCTGATGACTTCGTCAACGCGCACAATGCGGTTCGAGCCAAGGTCGGGGCTGAACCCCTCTATTGGGACGAGGAACTCGCAACTTATGCTAAAAATTACATCACGTCGAAGATTAAAACTTGTGAAATGGTGCATTCCAAAGGCCCTTATGGCGAGAACTTGGCAACGGTAAACGGCGAGTTGACCGCGGCGGCTGCCGTGAATGCATGGGCAGATGAGAAGAAGTACTATAATCACAACTCCAACAAATGTGTGGGGGGCGAGTGCCGACATTATACACAATTGGTGTGGAAAAATAGTTTTTTGGTGGGTTGTGCTAGTGTTAAATGCAAAAACAATTGGTCTTTAGTCTCATGCAACTATAGTCCTTCTGGTAATGTTGTTGGTGAGCTACCTTATTAG

Protein sequence

MALANVLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVWKNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY

Homology

[Close]

BLAST of Lsi03G006200 vs. Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-44
Identity = 78/157 (49.68%), Postives = 104/157 (66.24%), Query Frame = 1


Query: 3   LANVLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITS 62
           L  +++    FA+ L     AQN+P D++N HNA R +VG  P+ WD  LA YA+NY   
Sbjct: 4   LTTIVACFITFAI-LIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQ 63

Query: 63  KIKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLV 122
           +I  C M+HS GPYGENLA    +L AA AV  W DEK++Y++NSN CVGG C HYTQ+V
Sbjct: 64  RIGDCGMIHSHGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVV 123

Query: 123 WKNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           W+NS  +GCA V+  N W  ++CNY P GN +G+ P+
Sbjct: 124 WRNSVRLGCARVRSNNGWFFITCNYDPPGNFIGQRPF 159

[Close]

BLAST of Lsi03G006200 vs. Swiss-Prot
Match: PR1B_TOBAC (Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-42
Identity = 82/156 (52.56%), Postives = 108/156 (69.23%), Query Frame = 1


Query: 6   VLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIK 65
           ++S L +F L ++    AQN+  D+++AHN  RA VG EPL WD  +A YA+NY++    
Sbjct: 14  LVSTLLLF-LIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAA 73

Query: 66  TCEMVHSKGPYGENLATVNGE-LTAAAAVNAWADEKKYYNHNSNKCVGGE-CRHYTQLVW 125
            C +VHS G YGENLA  +G+ +TAA AV  W DEK+YY+H+SN C  G+ C HYTQ+VW
Sbjct: 74  DCNLVHSHGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVW 133

Query: 126 KNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           +NS  VGCA VKC N   +VSCNY P GNV+G+ PY
Sbjct: 134 RNSVRVGCARVKCNNGGYVVSCNYDPPGNVIGQSPY 168

[Close]

BLAST of Lsi03G006200 vs. Swiss-Prot
Match: PR1C_TOBAC (Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3)

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-41
Identity = 81/156 (51.92%), Postives = 108/156 (69.23%), Query Frame = 1


Query: 6   VLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIK 65
           ++S L +F L ++    AQN+  D+++AHN  RA VG EPL WD+++A YA+NY +    
Sbjct: 14  LVSTLLLF-LIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAA 73

Query: 66  TCEMVHSKGPYGENLATVNGE-LTAAAAVNAWADEKKYYNHNSNKCVGGE-CRHYTQLVW 125
            C +VHS G YGENLA  +G+ LTAA AV  W +EK+YY H+SN C  G+ C HYTQ+VW
Sbjct: 74  DCNLVHSHGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVW 133

Query: 126 KNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           +NS  VGCA V+C N   +VSCNY P GNV+G+ PY
Sbjct: 134 RNSVRVGCARVQCNNGGYIVSCNYDPPGNVIGKSPY 168

[Close]

BLAST of Lsi03G006200 vs. Swiss-Prot
Match: PR1A_TOBAC (Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-41
Identity = 81/156 (51.92%), Postives = 107/156 (68.59%), Query Frame = 1


Query: 6   VLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIK 65
           ++S L +F L ++    AQN+  D+++AHN  RA VG EPL WD+++A YA+NY +    
Sbjct: 14  LVSTLLLF-LVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAA 73

Query: 66  TCEMVHSKGPYGENLATVNGE-LTAAAAVNAWADEKKYYNHNSNKCVGGE-CRHYTQLVW 125
            C +VHS G YGENLA  +G+ +TAA AV  W DEK+YY+H+SN C  G+ C HYTQ+VW
Sbjct: 74  DCNLVHSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVW 133

Query: 126 KNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           +NS  VGCA V+C N   +VSCNY P GN  GE PY
Sbjct: 134 RNSVRVGCARVQCNNGGYVVSCNYDPPGNYRGESPY 168

[Close]

BLAST of Lsi03G006200 vs. Swiss-Prot
Match: PRB1_ARATH (Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=PRB1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.4e-40
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 1


Query: 4   ANVLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSK 63
           + +L  L      L   + AQ++  D+VNAHN  R+++G  P+ WDE LA YA+NY    
Sbjct: 7   SRILIILAALVGALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQL 66

Query: 64  IKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVW 123
              C +VHS+GPYGENLA   G+L+  AAVN W +EK  YN+++N C  G C HYTQ+VW
Sbjct: 67  KGDCRLVHSRGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTC-NGVCGHYTQVVW 126

Query: 124 KNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           +NS  +GCA V+C N  +++SCNY P GN   + PY
Sbjct: 127 RNSVRLGCAKVRCNNGGTIISCNYDPPGNYANQKPY 161

[Close]

BLAST of Lsi03G006200 vs. TrEMBL
Match: A0A0A0K4C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.2e-70
Identity = 123/160 (76.88%), Postives = 145/160 (90.62%), Query Frame = 1


Query: 1   MALANVLSALCVFALTLT-PIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNY 60
           MAL+N  S++C+  LTLT P++VA N P ++V+AHNAVRA+VGA+P++WDEELA YA+NY
Sbjct: 4   MALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEVGADPVFWDEELAKYAQNY 63

Query: 61  ITSKIKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYT 120
           + SKI TCEMVHS G YGENLAT++G LTAAAAV AWADEKKYY+HNSNKCVGGECRHYT
Sbjct: 64  LDSKISTCEMVHSNGSYGENLATLDGLLTAAAAVKAWADEKKYYDHNSNKCVGGECRHYT 123

Query: 121 QLVWKNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           QLVWKNSFL+GCA++KCKNNWSLVSCNYSP+GNVVGELPY
Sbjct: 124 QLVWKNSFLIGCANIKCKNNWSLVSCNYSPAGNVVGELPY 163

[Close]

BLAST of Lsi03G006200 vs. TrEMBL
Match: A0A0A0K4C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070225 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-47
Identity = 88/143 (61.54%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 17  LTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKTCEMVHSKGPY 76
           L  I +AQN+  DFVNAHNA RAKVG  P+ W+  LA YA+ Y   KI TCEM HS GPY
Sbjct: 20  LASITLAQNSHQDFVNAHNAARAKVGVGPVSWNYTLAAYAQTYANKKIGTCEMQHSYGPY 79

Query: 77  GENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVWKNSFLVGCASVKC 136
           GENLA   GE+TA  AVN W  EKKYY+H+SN+C+G ECRHYTQ+VW+ +  VGCA VKC
Sbjct: 80  GENLAEGYGEMTAVEAVNFWVSEKKYYDHHSNRCIGDECRHYTQVVWRGTKHVGCARVKC 139

Query: 137 KNNWSLVSCNYSPSGNVVGELPY 160
            NNW  V CNY P  N VG+ PY
Sbjct: 140 HNNWIFVICNYDPPDNYVGQFPY 162

[Close]

BLAST of Lsi03G006200 vs. TrEMBL
Match: E5FP99_POPTO (Pathogenesis related protein-1 OS=Populus tomentosa PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 85/153 (55.56%), Postives = 110/153 (71.90%), Query Frame = 1


Query: 7   LSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKT 66
           ++ L  FA+T+ P+ +AQ++P D+VNAHN  RA+VG   + WD  +A YA NYI      
Sbjct: 10  IAFLIAFAITI-PLSLAQDSPQDYVNAHNNARAQVGVGNIVWDTNVAAYASNYIKRLTGD 69

Query: 67  CEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVWKNS 126
           C +VHS GPYGENLA  +G+LT +AAV  W DEK  Y++NSN CVGGECRHYTQ+VW+NS
Sbjct: 70  CRLVHSGGPYGENLAGGSGDLTGSAAVKLWVDEKPKYDYNSNSCVGGECRHYTQVVWRNS 129

Query: 127 FLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
             +GCA  KC N  +++SCNYSP GN VG+ PY
Sbjct: 130 VRLGCAKAKCSNGGTVISCNYSPPGNYVGQRPY 161

[Close]

BLAST of Lsi03G006200 vs. TrEMBL
Match: A0A0D2RAA3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G212900 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-45
Identity = 81/152 (53.29%), Postives = 110/152 (72.37%), Query Frame = 1


Query: 9   ALCVFALTLTPIVVAQN-NPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKTC 68
           A+C+ A TL  + +AQN + +D++N HNA RAKVG  P+ WD  +A YA+ Y + +I  C
Sbjct: 8   AICLMAFTLAYVSLAQNPSNEDYLNVHNAARAKVGVGPMTWDATVAAYAQQYASKRIADC 67

Query: 69  EMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVWKNSF 128
           +++HS GPYGENLA  +  L+ A AV  W DEK +YN+++N+CVGGEC HYTQ+VW+NS 
Sbjct: 68  DLIHSTGPYGENLAEASYALSGAEAVTLWVDEKPHYNYDANQCVGGECLHYTQVVWRNST 127

Query: 129 LVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
            +GCA VKC + W  V+CNY P GN+VGE PY
Sbjct: 128 RLGCARVKCNSGWWFVTCNYDPPGNIVGERPY 159

[Close]

BLAST of Lsi03G006200 vs. TrEMBL
Match: A0A061DYW2_THECC (Pathogenesis-related protein 1 OS=Theobroma cacao GN=TCM_006335 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.1e-45
Identity = 82/159 (51.57%), Postives = 110/159 (69.18%), Query Frame = 1


Query: 1   MALANVLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYI 60
           M L     A+C+ A TL  + +AQN+P D+++ H+A RA+VG  P+ WD E+A YA++Y 
Sbjct: 1   MGLTKFSLAICLLASTLVHVSLAQNSPQDYLSVHDAARAQVGVGPMTWDPEVAAYAQDYA 60

Query: 61  TSKIKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQ 120
             ++  C +VHS GPYGEN+A  +  LT A AV  W DEK YYN+++N CVGGEC HYTQ
Sbjct: 61  NIRVADCGLVHSYGPYGENIAEASYALTGAEAVQMWVDEKPYYNYDANICVGGECLHYTQ 120

Query: 121 LVWKNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           +VW+NS  +GCA V+C + W  V+CNY P GN VGE PY
Sbjct: 121 VVWRNSTRLGCARVECNSGWWFVTCNYDPPGNYVGERPY 159

[Close]

BLAST of Lsi03G006200 vs. TAIR10
Match: AT2G14580.1 (AT2G14580.1 basic pathogenesis-related protein 1)

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-41
Identity = 73/156 (46.79%), Postives = 100/156 (64.10%), Query Frame = 1


Query: 4   ANVLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSK 63
           + +L  L      L   + AQ++  D+VNAHN  R+++G  P+ WDE LA YA+NY    
Sbjct: 7   SRILIILAALVGALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQL 66

Query: 64  IKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVW 123
              C +VHS+GPYGENLA   G+L+  AAVN W +EK  YN+++N C  G C HYTQ+VW
Sbjct: 67  KGDCRLVHSRGPYGENLAKSGGDLSGVAAVNLWVNEKANYNYDTNTC-NGVCGHYTQVVW 126

Query: 124 KNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           +NS  +GCA V+C N  +++SCNY P GN   + PY
Sbjct: 127 RNSVRLGCAKVRCNNGGTIISCNYDPPGNYANQKPY 161

[Close]

BLAST of Lsi03G006200 vs. TAIR10
Match: AT1G50060.1 (AT1G50060.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 161.0 bits (406), Expect = 6.0e-40
Identity = 72/139 (51.80%), Postives = 91/139 (65.47%), Query Frame = 1


Query: 23  AQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKTCEMVHSKGPYGENLAT 82
           AQN P D++N+HN  RA+VG   + WD  LA YA NY   +   C +VHS GPYGENLA 
Sbjct: 23  AQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALNYSNFRKADCNLVHSNGPYGENLAK 82

Query: 83  -VNGELTAAAAVNAWADEKKYYNHNSNKCVGG-ECRHYTQLVWKNSFLVGCASVKCKNNW 142
             +   +A +AV  W DEK YY++  N C GG +C HYTQ+VW++S  +GCA V+C N W
Sbjct: 83  GSSSSFSAISAVKLWVDEKPYYSYAYNNCTGGKQCLHYTQVVWRDSVKIGCARVQCTNTW 142

Query: 143 SLVSCNYSPSGNVVGELPY 160
             VSCNY+  GN VGE PY
Sbjct: 143 WFVSCNYNSPGNWVGEYPY 161

[Close]

BLAST of Lsi03G006200 vs. TAIR10
Match: AT4G33720.1 (AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-39
Identity = 72/148 (48.65%), Postives = 97/148 (65.54%), Query Frame = 1


Query: 13  FALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKTCEMVHS 72
           F L L   + AQ++P DF+  HN  RA+VG  PL WDE++A YA+NY   +   C M HS
Sbjct: 16  FFLVLIVHLKAQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYANQRKGDCAMKHS 75

Query: 73  KGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCV-GGECRHYTQLVWKNSFLVGC 132
            G YGEN+A  +G +T  AAV+ W DE+  Y+++SN C    +C HYTQ+VW+NS  +GC
Sbjct: 76  SGSYGENIAWSSGSMTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHYTQVVWRNSERLGC 135

Query: 133 ASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           A V+C N  + ++CNY P GN VGE PY
Sbjct: 136 AKVRCNNGQTFITCNYDPPGNWVGEWPY 163

[Close]

BLAST of Lsi03G006200 vs. TAIR10
Match: AT3G19690.1 (AT3G19690.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 1


Query: 10  LCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKTCEM 69
           L + A+ L    +A++    F+ AHN  R +VG +PL WD+E+A YA +Y   +I  C +
Sbjct: 9   LFLLAIALFYGSLAEDLQQQFLEAHNEARNEVGLDPLVWDDEVAAYAASYANQRINDCAL 68

Query: 70  VHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKC---VGGECRHYTQLVWKNS 129
           VHS GP+GEN+A  +GE++A  A   W +EK+YY+++SN C    GG C HYTQ+VWKN+
Sbjct: 69  VHSNGPFGENIAMSSGEMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQVVWKNT 128

Query: 130 FLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
             +GCA V C +  + ++CNY P GN +GE P+
Sbjct: 129 VRLGCAKVVCNSGGTFITCNYDPPGNYIGEKPF 161

[Close]

BLAST of Lsi03G006200 vs. TAIR10
Match: AT2G14610.1 (AT2G14610.1 pathogenesis-related gene 1)

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-38
Identity = 70/153 (45.75%), Postives = 96/153 (62.75%), Query Frame = 1


Query: 10  LCVFALTLTPIVV---AQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKT 69
           L VF   +  +V+   AQ++P D++  HN  R  VG  P+ WDE +A YA++Y       
Sbjct: 10  LIVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGN 69

Query: 70  CEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVWKNS 129
           C ++HS GPYGENLA  +G+L+  +AVN W  EK  YN+ +N C  G C HYTQ+VW+ S
Sbjct: 70  CRLIHSGGPYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTC-NGVCGHYTQVVWRKS 129

Query: 130 FLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
             +GCA V+C N  +++SCNY P GN V E PY
Sbjct: 130 VRLGCAKVRCNNGGTIISCNYDPRGNYVNEKPY 161

[Close]

BLAST of Lsi03G006200 vs. NCBI nr
Match: gi|449438610|ref|XP_004137081.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 4.6e-74
Identity = 134/159 (84.28%), Postives = 141/159 (88.68%), Query Frame = 1


Query: 1   MALANVLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYI 60
           MALA  LSALC+ AL LTPIV+AQN+P DF +AHNAVRAKVGAEPL+WDEEL  YAKNYI
Sbjct: 1   MALATTLSALCIVALALTPIVIAQNSPQDFFDAHNAVRAKVGAEPLFWDEELEAYAKNYI 60

Query: 61  TSKIKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQ 120
           TSKIKTCEMVH  GPYGENLAT N  LTAAA+VN WA EKKYYNHNSNKC GGECRHY Q
Sbjct: 61  TSKIKTCEMVHFVGPYGENLATANPVLTAAASVNTWAAEKKYYNHNSNKCEGGECRHYRQ 120

Query: 121 LVWKNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           LVWKNSFLVGCA+VKCKNNWSLVSCNYSPSGNVVGE PY
Sbjct: 121 LVWKNSFLVGCATVKCKNNWSLVSCNYSPSGNVVGERPY 159

[Close]

BLAST of Lsi03G006200 vs. NCBI nr
Match: gi|659110135|ref|XP_008455067.1| (PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 5.3e-70
Identity = 119/159 (74.84%), Postives = 143/159 (89.94%), Query Frame = 1


Query: 1   MALANVLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYI 60
           MAL+N+ S++C+  LTL P++VA N P ++V+AHNAVRA+VG +P++WDEELA YA+NY+
Sbjct: 29  MALSNIPSSICLIMLTLIPMIVAHNTPQNYVDAHNAVRAEVGVDPVFWDEELAKYAQNYL 88

Query: 61  TSKIKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQ 120
            SK+ TCEMVHS GPYGENLAT++G LTAAAAV AWADEKKYY+HNSN CVGGECRHYTQ
Sbjct: 89  ESKVSTCEMVHSNGPYGENLATLDGLLTAAAAVQAWADEKKYYDHNSNTCVGGECRHYTQ 148

Query: 121 LVWKNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           LVWKNSFL+GCA++KCKNNWSLVSCNYSP+GNV GELPY
Sbjct: 149 LVWKNSFLIGCANIKCKNNWSLVSCNYSPAGNVAGELPY 187

[Close]

BLAST of Lsi03G006200 vs. NCBI nr
Match: gi|778724761|ref|XP_004137082.2| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69
Identity = 123/160 (76.88%), Postives = 145/160 (90.62%), Query Frame = 1


Query: 1   MALANVLSALCVFALTLT-PIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNY 60
           MAL+N  S++C+  LTLT P++VA N P ++V+AHNAVRA+VGA+P++WDEELA YA+NY
Sbjct: 4   MALSNFPSSICLIMLTLTIPMIVAHNTPQNYVDAHNAVRAEVGADPVFWDEELAKYAQNY 63

Query: 61  ITSKIKTCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYT 120
           + SKI TCEMVHS G YGENLAT++G LTAAAAV AWADEKKYY+HNSNKCVGGECRHYT
Sbjct: 64  LDSKISTCEMVHSNGSYGENLATLDGLLTAAAAVKAWADEKKYYDHNSNKCVGGECRHYT 123

Query: 121 QLVWKNSFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           QLVWKNSFL+GCA++KCKNNWSLVSCNYSP+GNVVGELPY
Sbjct: 124 QLVWKNSFLIGCANIKCKNNWSLVSCNYSPAGNVVGELPY 163

[Close]

BLAST of Lsi03G006200 vs. NCBI nr
Match: gi|659110143|ref|XP_008455071.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 3.9e-49
Identity = 91/154 (59.09%), Postives = 110/154 (71.43%), Query Frame = 1


Query: 6   VLSALCVFALTLTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIK 65
           ++S + +  +TL PI +AQN+  DFVNAHN  RAKVG  P+ W+  LA YA+ Y   KI 
Sbjct: 8   LISFMMMGLITLAPITLAQNSHQDFVNAHNNARAKVGVGPVSWNYTLAAYAQTYANKKIG 67

Query: 66  TCEMVHSKGPYGENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVWKN 125
           TCEM HS GPYGENLA   GE+TA  AVN W  EKKYY+H+SN+C+G ECRHYTQ+VW+ 
Sbjct: 68  TCEMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHHSNRCIGDECRHYTQVVWRG 127

Query: 126 SFLVGCASVKCKNNWSLVSCNYSPSGNVVGELPY 160
           +  VGCA VKC NNW  V CNY P GN VG+ PY
Sbjct: 128 TKHVGCARVKCHNNWIFVICNYDPPGNYVGQFPY 161

[Close]

BLAST of Lsi03G006200 vs. NCBI nr
Match: gi|449438289|ref|XP_004136921.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-47
Identity = 88/143 (61.54%), Postives = 102/143 (71.33%), Query Frame = 1


Query: 17  LTPIVVAQNNPDDFVNAHNAVRAKVGAEPLYWDEELATYAKNYITSKIKTCEMVHSKGPY 76
           L  I +AQN+  DFVNAHNA RAKVG  P+ W+  LA YA+ Y   KI TCEM HS GPY
Sbjct: 20  LASITLAQNSHQDFVNAHNAARAKVGVGPVSWNYTLAAYAQTYANKKIGTCEMQHSYGPY 79

Query: 77  GENLATVNGELTAAAAVNAWADEKKYYNHNSNKCVGGECRHYTQLVWKNSFLVGCASVKC 136
           GENLA   GE+TA  AVN W  EKKYY+H+SN+C+G ECRHYTQ+VW+ +  VGCA VKC
Sbjct: 80  GENLAEGYGEMTAVEAVNFWVSEKKYYDHHSNRCIGDECRHYTQVVWRGTKHVGCARVKC 139

Query: 137 KNNWSLVSCNYSPSGNVVGELPY 160
            NNW  V CNY P  N VG+ PY
Sbjct: 140 HNNWIFVICNYDPPDNYVGQFPY 162

The following BLAST results are available for this feature:

BLAST of Lsi03G006200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRB1_TOBAC	1.7e-44	49.68	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1	[more]
PR1B_TOBAC	2.7e-42	52.56	Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1	[more]
PR1C_TOBAC	2.3e-41	51.92	Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3	[more]
PR1A_TOBAC	2.3e-41	51.92	Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1	[more]
PRB1_ARATH	4.4e-40	46.79	Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=PRB1 PE=2 SV=1	[more]

BLAST of Lsi03G006200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4C6_CUCSA	8.2e-70	76.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070250 PE=3 SV=1	[more]
A0A0A0K4C1_CUCSA	2.0e-47	61.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070225 PE=3 SV=1	[more]
E5FP99_POPTO	1.4e-45	55.56	Pathogenesis related protein-1 OS=Populus tomentosa PE=2 SV=1	[more]
A0A0D2RAA3_GOSRA	3.1e-45	53.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G212900 PE=3 SV=1	[more]
A0A061DYW2_THECC	4.1e-45	51.57	Pathogenesis-related protein 1 OS=Theobroma cacao GN=TCM_006335 PE=4 SV=1	[more]

BLAST of Lsi03G006200 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14580.1	2.5e-41	46.79	basic pathogenesis-related protein 1	[more]
AT1G50060.1	6.0e-40	51.80	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT4G33720.1	1.8e-39	48.65	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT3G19690.1	1.9e-38	44.44	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT2G14610.1	2.5e-38	45.75	pathogenesis-related gene 1	[more]

BLAST of Lsi03G006200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438610\|ref\|XP_004137081.1\|	4.6e-74	84.28	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|659110135\|ref\|XP_008455067.1\|	5.3e-70	74.84	PREDICTED: pathogenesis-related protein 1A-like [Cucumis melo]	[more]
gi\|778724761\|ref\|XP_004137082.2\|	1.2e-69	76.88	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|659110143\|ref\|XP_008455071.1\|	3.9e-49	59.09	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]
gi\|449438289\|ref\|XP_004136921.1\|	2.8e-47	61.54	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR018244	Allrgn_V5/Tpx1_CS
IPR014044	CAP_domain
IPR001283	Allrgn_V5/Tpx1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006200.1	Lsi03G006200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PRINTS	PR00837	V5TPXLIKE	coord: 142..155 score: 7.9E-16coord: 46..64 score: 7.9E-16coord: 115..131 score: 7.9E-16coord: 92..105 score: 7.9
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 1..159 score: 2.6
IPR014044	CAP domain	GENE3D	G3DSA:3.40.33.10		coord: 24..159 score: 3.3
IPR014044	CAP domain	PFAM	PF00188	CAP	coord: 31..147 score: 9.1
IPR014044	CAP domain	SMART	SM00198	SCP_3	coord: 25..155 score: 8.9
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 10..159 score: 3.92
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01009	CRISP_1	coord: 116..126 scor
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01010	CRISP_2	coord: 142..153 scor
None	No IPR available	PANTHER	PTHR10334:SF223	F2J10.6 PROTEIN-RELATED	coord: 1..159 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G006200	Cla97C02G034050	Watermelon (97103) v2	lsiwmbB226
Lsi03G006200	Bhi05G000847	Wax gourd	lsiwgoB320

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006200	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006200	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006200	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006200	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G006200	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006200	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006200	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006200	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006200	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006200	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006200	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006200	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006200	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006200	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006200	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006200	Watermelon (97103) v1	lsiwmB245
Lsi03G006200	Watermelon (97103) v1	lsiwmB268
Lsi03G006200	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006200	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006200	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G006200	Wax gourd	lsiwgoB307
Lsi03G006200	Bottle gourd (USVL1VR-Ls)	lsilsiB126