Lsi03G006150 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	CAP, cysteine-rich secretory protein, antigen 5
Location	chr03 : 7678949 .. 7679221 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACAATGCCATTCATGCCGAGTATGGCGTTGGGCCGGTCACTTAGAACAAAACCTTGGCTAAGTATGCTCAAAATTACGCTGAAACTAAGATCGCTACCAGCAAGATGGAGCACTTTGGAACCTTATGGCGAAAACTTGGCCGAAGCATGCGAGACGACAACCGCAGAATTGACAGTGAATTATTGGGCTGGTTGGAAGAAATTTTACGACCACAAATCAAACAAGTGCGTCGAGGAAGAGTGCGGCCATTTCCTTCAAGTTGGTTGA

mRNA sequence

ATGCCTACAATGCCATTCATGCCGAGTATGGCGTTGGGCCGGTCACTTAGAACAAAACCTTGGCTAAGTATGCTCAAAATTACGCTGAAACTAAGATCGCTACCAGCAAGATGGAGCACTTTGGAACCTTATGGCGAAAACTTGGCCGAAGCATGCGAGACGACAACCGCAGAATTGACAGTGAATTATTGGGCTGGTTGGAAGAAATTTTACGACCACAAATCAAACAAGTGCGTCGAGGAAGAGTGCGGCCATTTCCTTCAAGTTGGTTGA

Coding sequence (CDS)

ATGCCTACAATGCCATTCATGCCGAGTATGGCGTTGGGCCGGTCACTTAGAACAAAACCTTGGCTAAGTATGCTCAAAATTACGCTGAAACTAAGATCGCTACCAGCAAGATGGAGCACTTTGGAACCTTATGGCGAAAACTTGGCCGAAGCATGCGAGACGACAACCGCAGAATTGACAGTGAATTATTGGGCTGGTTGGAAGAAATTTTACGACCACAAATCAAACAAGTGCGTCGAGGAAGAGTGCGGCCATTTCCTTCAAGTTGGTTGA

Protein sequence

MPTMPFMPSMALGRSLRTKPWLSMLKITLKLRSLPARWSTLEPYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQVG

Homology

[Close]

BLAST of Lsi03G006150 vs. Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.0e-07
Identity = 24/47 (51.06%), Postives = 27/47 (57.45%), Query Frame = 1


Query: 43  PYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           PYGENLA A     A   V  W   K+FYD+ SN CV   CGH+ QV
Sbjct: 75  PYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQV 121

[Close]

BLAST of Lsi03G006150 vs. TrEMBL
Match: A0A0A0K2C5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070230 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 40  TLEPYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           ++ PYGENLAEA E TTAELTVNYWA   KFYDHKSNKCVEEECGHFLQ+
Sbjct: 77  SMGPYGENLAEAFEKTTAELTVNYWASEDKFYDHKSNKCVEEECGHFLQI 126

[Close]

BLAST of Lsi03G006150 vs. TrEMBL
Match: A0A0A0K4C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070225 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-08
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 43  PYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           PYGENLAE     TA   VN+W   KK+YDH SN+C+ +EC H+ QV
Sbjct: 78  PYGENLAEGYGEMTAVEAVNFWVSEKKYYDHHSNRCIGDECRHYTQV 124

[Close]

BLAST of Lsi03G006150 vs. TrEMBL
Match: A0A0A0K6A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070235 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-07
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 43  PYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           PYGENLAE  +  T    V +WA  KKFY+H  N+CV +ECGH+ Q+
Sbjct: 77  PYGENLAEGYDEMTGVEAVRFWATEKKFYNHHLNRCVGDECGHYTQI 123

[Close]

BLAST of Lsi03G006150 vs. TrEMBL
Match: V7BUQ0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G197500g PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1


Query: 40  TLEPYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           ++ PYGENLAE          V +W   K +YD+KSNKCV +ECGH+ Q+
Sbjct: 70  SMGPYGENLAEGYGEMKGSDAVKFWLTEKPYYDYKSNKCVHDECGHYTQI 119

[Close]

BLAST of Lsi03G006150 vs. TrEMBL
Match: G1FU08_9ROSI (Pathogenesis-related protein OS=Vitis quinquangularis GN=PR-1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.8e-06
Identity = 25/47 (53.19%), Postives = 28/47 (59.57%), Query Frame = 1


Query: 43  PYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           PYGENLA    + T    VN W G K  YDH SN CV  +CGH+ QV
Sbjct: 76  PYGENLARGSPSLTGTDAVNLWVGEKSNYDHNSNSCVGGQCGHYTQV 122

[Close]

BLAST of Lsi03G006150 vs. NCBI nr
Match: gi|449438606|ref|XP_004137079.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 40  TLEPYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           ++ PYGENLAEA E TTAELTVNYWA   KFYDHKSNKCVEEECGHFLQ+
Sbjct: 77  SMGPYGENLAEAFEKTTAELTVNYWASEDKFYDHKSNKCVEEECGHFLQI 126

[Close]

BLAST of Lsi03G006150 vs. NCBI nr
Match: gi|659110141|ref|XP_008455070.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 40  TLEPYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           ++ PYGENLAEA E TTAELTVNYWA   KFYDHKSNKCVEEECGHFLQV
Sbjct: 77  SMGPYGENLAEAFEKTTAELTVNYWATEDKFYDHKSNKCVEEECGHFLQV 126

[Close]

BLAST of Lsi03G006150 vs. NCBI nr
Match: gi|449438289|ref|XP_004136921.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 43  PYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           PYGENLAE     TA   VN+W   KK+YDH SN+C+ +EC H+ QV
Sbjct: 78  PYGENLAEGYGEMTAVEAVNFWVSEKKYYDHHSNRCIGDECRHYTQV 124

[Close]

BLAST of Lsi03G006150 vs. NCBI nr
Match: gi|659110143|ref|XP_008455071.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 43  PYGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           PYGENLAE     TA   VN+W   KK+YDH SN+C+ +EC H+ QV
Sbjct: 77  PYGENLAEGYGEMTAVEAVNFWVSEKKYYDHHSNRCIGDECRHYTQV 123

[Close]

BLAST of Lsi03G006150 vs. NCBI nr
Match: gi|657962661|ref|XP_008372931.1| (PREDICTED: pathogenesis-related protein 1A-like [Malus domestica])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1


Query: 44  YGENLAEACETTTAELTVNYWAGWKKFYDHKSNKCVEEECGHFLQV 90
           +GENLA     T A+ T  YW   K+FYDHKSNKCV+EECGH+L V
Sbjct: 78  WGENLASGAGMTAADAT-KYWVTEKEFYDHKSNKCVKEECGHYLAV 122

The following BLAST results are available for this feature:

BLAST of Lsi03G006150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRB1_TOBAC	8.0e-07	51.06	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1	[more]

BLAST of Lsi03G006150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C5_CUCSA	1.3e-16	82.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070230 PE=4 SV=1	[more]
A0A0A0K4C1_CUCSA	8.6e-08	55.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070225 PE=3 SV=1	[more]
A0A0A0K6A0_CUCSA	2.5e-07	53.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070235 PE=3 SV=1	[more]
V7BUQ0_PHAVU	1.6e-06	48.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G197500g PE=3 SV=1	[more]
G1FU08_9ROSI	2.8e-06	53.19	Pathogenesis-related protein OS=Vitis quinquangularis GN=PR-1 PE=2 SV=1	[more]

BLAST of Lsi03G006150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G006150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438606\|ref\|XP_004137079.1\|	1.9e-16	82.00	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|659110141\|ref\|XP_008455070.1\|	2.5e-16	84.00	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]
gi\|449438289\|ref\|XP_004136921.1\|	1.2e-07	55.32	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|659110143\|ref\|XP_008455071.1\|	1.2e-07	55.32	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis melo]	[more]
gi\|657962661\|ref\|XP_008372931.1\|	1.6e-07	60.87	PREDICTED: pathogenesis-related protein 1A-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014044	CAP_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006150.1	Lsi03G006150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014044	CAP domain	GENE3D	G3DSA:3.40.33.10		coord: 36..89 score: 1.
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 35..89 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006150	Watermelon (97103) v2	lsiwmbB226
Lsi03G006150	Wax gourd	lsiwgoB307
Lsi03G006150	Wax gourd	lsiwgoB319
Lsi03G006150	Wax gourd	lsiwgoB320
Lsi03G006150	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G006150	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006150	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006150	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006150	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G006150	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006150	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006150	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006150	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006150	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006150	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006150	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006150	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006150	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006150	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006150	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006150	Watermelon (97103) v1	lsiwmB245
Lsi03G006150	Watermelon (97103) v1	lsiwmB268
Lsi03G006150	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006150	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006150	Cucumber (Chinese Long) v3	cuclsiB555