Lsi03G006060 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cysteine-rich venom protein
Location	chr03 : 7585653 .. 7586090 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCTTCCTCTCTTGCTCAAGACTCGCCTCAAGACTTCGTCAATGCCCACAACGTGGCTCGTTCCCAAGTTGGGGTCGGGCCGGTCCAATGGGATGAAAGAGTAGCAAGTTTTGCTCGACAATATGCCAACCAACGCATCAATGACTGTAAGTTGGTGCACTCAGGAGGACCGTATGGGGAGAACATTGCATGGGGCTGGCCAGACTTATCAGGCACGGCTGCAGTTCAGATGTGGGTCAATGAGAAGCAATTTTACGATTATGGCACCAATACTTGTGCATCTGGTAAGGTGTGCGGCCATTACACTCAAGTCGTGTGGAGAAATTCAGTGAGAATCGGATGTGCCAAAGTGAGATGCACAAATAATGGTGGTACTTTCATCATTTGCAACTATGAACCCCGAGGCAATATCATAGGTCAAAGGCCATATTGA

mRNA sequence

ATGCTTCCTTCCTCTCTTGCTCAAGACTCGCCTCAAGACTTCGTCAATGCCCACAACGTGGCTCGTTCCCAAGTTGGGGTCGGGCCGGTCCAATGGGATGAAAGAGTAGCAAGTTTTGCTCGACAATATGCCAACCAACGCATCAATGACTGTAAGTTGGTGCACTCAGGAGGACCGTATGGGGAGAACATTGCATGGGGCTGGCCAGACTTATCAGGCACGGCTGCAGTTCAGATGTGGGTCAATGAGAAGCAATTTTACGATTATGGCACCAATACTTGTGCATCTGGTAAGGTGTGCGGCCATTACACTCAAGTCGTGTGGAGAAATTCAGTGAGAATCGGATGTGCCAAAGTGAGATGCACAAATAATGGTGGTACTTTCATCATTTGCAACTATGAACCCCGAGGCAATATCATAGGTCAAAGGCCATATTGA

Coding sequence (CDS)

ATGCTTCCTTCCTCTCTTGCTCAAGACTCGCCTCAAGACTTCGTCAATGCCCACAACGTGGCTCGTTCCCAAGTTGGGGTCGGGCCGGTCCAATGGGATGAAAGAGTAGCAAGTTTTGCTCGACAATATGCCAACCAACGCATCAATGACTGTAAGTTGGTGCACTCAGGAGGACCGTATGGGGAGAACATTGCATGGGGCTGGCCAGACTTATCAGGCACGGCTGCAGTTCAGATGTGGGTCAATGAGAAGCAATTTTACGATTATGGCACCAATACTTGTGCATCTGGTAAGGTGTGCGGCCATTACACTCAAGTCGTGTGGAGAAATTCAGTGAGAATCGGATGTGCCAAAGTGAGATGCACAAATAATGGTGGTACTTTCATCATTTGCAACTATGAACCCCGAGGCAATATCATAGGTCAAAGGCCATATTGA

Protein sequence

MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVRCTNNGGTFIICNYEPRGNIIGQRPY

Homology

[Close]

BLAST of Lsi03G006060 vs. Swiss-Prot
Match: PR1_HORVU (Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-56
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           M+  S AQ+SPQD+V+ HN ARS VGVG V W  ++ +FA+ YANQRINDCKL HSGGPY
Sbjct: 18  MVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSGGPY 77

Query: 61  GENIAWG--WPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAK 120
           GENI WG    D   + AV  WV+EK+ YDYG+NTCA+GKVCGHYTQVVWR S  IGCA+
Sbjct: 78  GENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCAR 137

Query: 121 VRCTNNGGTFIICNYEPRGNIIGQRPY 146
           V C NN G FI CNYEPRGNIIGQ+PY
Sbjct: 138 VVCNNNRGVFITCNYEPRGNIIGQKPY 164

[Close]

BLAST of Lsi03G006060 vs. Swiss-Prot
Match: PR12_HORVU (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.2e-56
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           M+  S AQ+SPQD+V+ HN ARS VGVG V W  ++ +FA+ YANQRINDCKL HSGGPY
Sbjct: 18  MVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSGGPY 77

Query: 61  GENIAWG--WPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAK 120
           GENI WG    D     AV  WVNEK+ Y+YG+NTCA+GKVCGHYTQVVWR S  IGCA+
Sbjct: 78  GENIFWGSAGADWKAADAVNSWVNEKKDYNYGSNTCAAGKVCGHYTQVVWRASTSIGCAR 137

Query: 121 VRCTNNGGTFIICNYEPRGNIIGQRPY 146
           V C NN G FI CNYEPRGNI+GQ+PY
Sbjct: 138 VVCNNNRGVFITCNYEPRGNIVGQKPY 164

[Close]

BLAST of Lsi03G006060 vs. Swiss-Prot
Match: PR13_HORVU (Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.8e-56
Identity = 97/147 (65.99%), Postives = 114/147 (77.55%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           M+  S AQ+SPQD+V+ HN AR+ VGVG V W  ++ +FA+ YANQRINDCKL HSGGPY
Sbjct: 18  MVNLSQAQNSPQDYVSPHNAARAAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSGGPY 77

Query: 61  GENIAWG--WPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAK 120
           GENI WG    D   + AV  WV+EK+ YDYG+NTCA+GKVCGHYTQVVWR S  IGCA+
Sbjct: 78  GENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAAGKVCGHYTQVVWRASTSIGCAR 137

Query: 121 VRCTNNGGTFIICNYEPRGNIIGQRPY 146
           V C NN G FI CNYEPRGNI+GQ+PY
Sbjct: 138 VVCNNNRGVFITCNYEPRGNIVGQKPY 164

[Close]

BLAST of Lsi03G006060 vs. Swiss-Prot
Match: PR1_ARATH (Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-55
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           +LPS  AQDSPQD++  HN AR  VGVGP+QWDERVA++AR YA Q   +C+L+HSGGPY
Sbjct: 21  VLPSK-AQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIHSGGPY 80

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GEN+AWG  DLSG +AV MWV+EK  Y+Y  NTC    VCGHYTQVVWR SVR+GCAKVR
Sbjct: 81  GENLAWGSGDLSGVSAVNMWVSEKANYNYAANTCNG--VCGHYTQVVWRKSVRLGCAKVR 140

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           C NNGGT I CNY+PRGN + ++PY
Sbjct: 141 C-NNGGTIISCNYDPRGNYVNEKPY 161

[Close]

BLAST of Lsi03G006060 vs. Swiss-Prot
Match: PRB1_TOBAC (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-54
Identity = 93/145 (64.14%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           ++ SS AQ+SPQD++N HN AR QVGVGP+ WD R+A++A+ YANQRI DC ++HS GPY
Sbjct: 17  LIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHSHGPY 76

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GEN+A  +P L+   AV+MWV+EK+FYDY +N+C  G VCGHYTQVVWRNSVR+GCA+VR
Sbjct: 77  GENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGG-VCGHYTQVVWRNSVRLGCARVR 136

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
            +NNG  FI CNY+P GN IGQRP+
Sbjct: 137 -SNNGWFFITCNYDPPGNFIGQRPF 159

[Close]

BLAST of Lsi03G006060 vs. TrEMBL
Match: A0A0A0K6A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070253 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.1e-72
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           MLPSSLAQDSPQDF++AHN AR+Q GV PVQWDE VASFA QYANQRINDC LVHSGGPY
Sbjct: 20  MLPSSLAQDSPQDFLDAHNTARAQDGVEPVQWDETVASFALQYANQRINDCSLVHSGGPY 79

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GENIAWG PDLSGTAAV+MWVNEK+FYDYG+NTCA+ +VCGHYTQVVWRNSVRIGCAKV 
Sbjct: 80  GENIAWGMPDLSGTAAVEMWVNEKEFYDYGSNTCAASRVCGHYTQVVWRNSVRIGCAKVI 139

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           CTNNGGTFI CNY+P GN +GQRPY
Sbjct: 140 CTNNGGTFITCNYDPPGNFVGQRPY 164

[Close]

BLAST of Lsi03G006060 vs. TrEMBL
Match: H3K3Z1_CUCME (Pathogenesis-related protein 1-1a (Fragment) OS=Cucumis melo GN=PR1-1a PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.5e-70
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 8   QDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENIAWG 67
           QDSP+DFVNAHN AR+QVGVGPV WDERVASFARQYANQRINDC+LVHSGGPYGENIAWG
Sbjct: 1   QDSPRDFVNAHNAARAQVGVGPVHWDERVASFARQYANQRINDCRLVHSGGPYGENIAWG 60

Query: 68  WPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVRCTNNGGT 127
            PDLSGTAAVQMWVNEKQFY+YG+NTCA+GKVCGHYTQVVWRNSVRIGCAKVRCTNN GT
Sbjct: 61  MPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVCGHYTQVVWRNSVRIGCAKVRCTNNRGT 120

Query: 128 FIICNYEPRG 138
           FIICNYEPRG
Sbjct: 121 FIICNYEPRG 130

[Close]

BLAST of Lsi03G006060 vs. TrEMBL
Match: A0A0A0K2V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070255 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 7.7e-67
Identity = 108/145 (74.48%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           MLPSSLAQDSPQD+VN+HN AR+ VGVGP++WDE+VA+++R YAN+R+NDC+LVHS GPY
Sbjct: 19  MLPSSLAQDSPQDYVNSHNHARAAVGVGPIKWDEKVANYSRYYANKRMNDCRLVHSNGPY 78

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GENIAWG PDLSG  AV++WV+EKQ+Y+Y +N+CASGKVCGHYTQVVW+NS+R+GCAKV+
Sbjct: 79  GENIAWGSPDLSGINAVKLWVDEKQYYNYNSNSCASGKVCGHYTQVVWKNSMRLGCAKVK 138

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           C N GG FI+CNY+PRGNI+GQRPY
Sbjct: 139 CKNKGGAFIVCNYDPRGNIVGQRPY 163

[Close]

BLAST of Lsi03G006060 vs. TrEMBL
Match: Q8S3W2_CUCSA (Pathogenesis-related protein 1-1a (Fragment) OS=Cucumis sativus GN=PR1-1a PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.4e-63
Identity = 110/140 (78.57%), Postives = 127/140 (90.71%), Query Frame = 1


Query: 7   AQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENIAW 66
           AQDSPQDFV  HNVAR+QVGVGP++WD+ VASFA+QYAN+R+NDC+LV+SGGPYGENIAW
Sbjct: 1   AQDSPQDFVGVHNVARAQVGVGPIEWDKTVASFAQQYANRRLNDCRLVNSGGPYGENIAW 60

Query: 67  GWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVRCTNN-G 126
           G PDLS   AVQ+WV+EK FY+Y TNTCA+G++CGHYTQVVWR SVRIGCAKVRCT+N G
Sbjct: 61  GSPDLSAKDAVQLWVDEKPFYNYETNTCAAGELCGHYTQVVWRKSVRIGCAKVRCTDNIG 120

Query: 127 GTFIICNYEPRGNIIGQRPY 146
           GTFIICNYEPRGN + QRPY
Sbjct: 121 GTFIICNYEPRGNFLYQRPY 140

[Close]

BLAST of Lsi03G006060 vs. TrEMBL
Match: W9R7L7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003726 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.2e-63
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           ML +S AQDSPQDF+NAHN AR++VGVG + WD++VAS+A+QYAN  I DC +VHSGGPY
Sbjct: 23  MLQASNAQDSPQDFLNAHNSARAEVGVGQMTWDDKVASYAQQYANSHIGDCSMVHSGGPY 82

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GEN+AW   DLSGT AV+MWVNEK  YDYG+NTCASGKVCGHYTQVVWRNSVR+GCAKVR
Sbjct: 83  GENLAWSSGDLSGTDAVRMWVNEKADYDYGSNTCASGKVCGHYTQVVWRNSVRLGCAKVR 142

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           C NN GT I CNY+PRGN +GQ+PY
Sbjct: 143 CNNNKGTLIGCNYDPRGNYVGQKPY 167

[Close]

BLAST of Lsi03G006060 vs. TAIR10
Match: AT2G14610.1 (AT2G14610.1 pathogenesis-related gene 1)

HSP 1 Score: 216.1 bits (549), Expect = 1.4e-56
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           +LPS  AQDSPQD++  HN AR  VGVGP+QWDERVA++AR YA Q   +C+L+HSGGPY
Sbjct: 21  VLPSK-AQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIHSGGPY 80

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GEN+AWG  DLSG +AV MWV+EK  Y+Y  NTC    VCGHYTQVVWR SVR+GCAKVR
Sbjct: 81  GENLAWGSGDLSGVSAVNMWVSEKANYNYAANTCNG--VCGHYTQVVWRKSVRLGCAKVR 140

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           C NNGGT I CNY+PRGN + ++PY
Sbjct: 141 C-NNGGTIISCNYDPRGNYVNEKPY 161

[Close]

BLAST of Lsi03G006060 vs. TAIR10
Match: AT2G14580.1 (AT2G14580.1 basic pathogenesis-related protein 1)

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-55
Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 1


Query: 7   AQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENIAW 66
           AQDS QD+VNAHN ARSQ+GVGP+QWDE +A++AR YANQ   DC+LVHS GPYGEN+A 
Sbjct: 26  AQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGDCRLVHSRGPYGENLAK 85

Query: 67  GWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVRCTNNGG 126
              DLSG AAV +WVNEK  Y+Y TNTC    VCGHYTQVVWRNSVR+GCAKVRC NNGG
Sbjct: 86  SGGDLSGVAAVNLWVNEKANYNYDTNTC--NGVCGHYTQVVWRNSVRLGCAKVRC-NNGG 145

Query: 127 TFIICNYEPRGNIIGQRPY 146
           T I CNY+P GN   Q+PY
Sbjct: 146 TIISCNYDPPGNYANQKPY 161

[Close]

BLAST of Lsi03G006060 vs. TAIR10
Match: AT4G33720.1 (AT4G33720.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 208.0 bits (528), Expect = 3.9e-54
Identity = 92/139 (66.19%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 7   AQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENIAW 66
           AQDSPQDF+  HN AR++VGVGP++WDE+VA++AR YANQR  DC + HS G YGENIAW
Sbjct: 26  AQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYANQRKGDCAMKHSSGSYGENIAW 85

Query: 67  GWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVRCTNNGG 126
               ++G AAV MWV+E+  YDY +NTCA  K CGHYTQVVWRNS R+GCAKVRC NNG 
Sbjct: 86  SSGSMTGVAAVDMWVDEQFDYDYDSNTCAWDKQCGHYTQVVWRNSERLGCAKVRC-NNGQ 145

Query: 127 TFIICNYEPRGNIIGQRPY 146
           TFI CNY+P GN +G+ PY
Sbjct: 146 TFITCNYDPPGNWVGEWPY 163

[Close]

BLAST of Lsi03G006060 vs. TAIR10
Match: AT3G19690.1 (AT3G19690.1 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.2e-50
Identity = 86/143 (60.14%), Postives = 111/143 (77.62%), Query Frame = 1


Query: 5   SLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENI 64
           SLA+D  Q F+ AHN AR++VG+ P+ WD+ VA++A  YANQRINDC LVHS GP+GENI
Sbjct: 20  SLAEDLQQQFLEAHNEARNEVGLDPLVWDDEVAAYAASYANQRINDCALVHSNGPFGENI 79

Query: 65  AWGWPDLSGTAAVQMWVNEKQFYDYGTNTC--ASGKVCGHYTQVVWRNSVRIGCAKVRCT 124
           A    ++S   A +MW+NEKQ+YDY +NTC   +G  C HYTQVVW+N+VR+GCAKV C 
Sbjct: 80  AMSSGEMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQVVWKNTVRLGCAKVVC- 139

Query: 125 NNGGTFIICNYEPRGNIIGQRPY 146
           N+GGTFI CNY+P GN IG++P+
Sbjct: 140 NSGGTFITCNYDPPGNYIGEKPF 161

[Close]

BLAST of Lsi03G006060 vs. TAIR10
Match: AT2G19990.1 (AT2G19990.1 pathogenesis-related protein-1-like)

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-46
Identity = 74/135 (54.81%), Postives = 101/135 (74.81%), Query Frame = 1


Query: 11  PQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENIAWGWPD 70
           PQ+ +  HN AR+ VGVGP+ W+E +A++A+ YA++R  DC + HS GP+GEN+A GW  
Sbjct: 42  PQETLVVHNKARAMVGVGPMVWNETLATYAQSYAHERARDCAMKHSLGPFGENLAAGWGT 101

Query: 71  LSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVRCTNNGGTFII 130
           +SG  A + W+ EK+ YDY +NTC    VCGHYTQ+VWR+SVR+GCA VRC N+   ++I
Sbjct: 102 MSGPVATEYWMTEKENYDYDSNTCGGDGVCGHYTQIVWRDSVRLGCASVRCKNDEYIWVI 161

Query: 131 CNYEPRGNIIGQRPY 146
           C+Y+P GN IGQRPY
Sbjct: 162 CSYDPPGNYIGQRPY 176

[Close]

BLAST of Lsi03G006060 vs. NCBI nr
Match: gi|659110129|ref|XP_008455064.1| (PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 2.8e-78
Identity = 134/145 (92.41%), Postives = 141/145 (97.24%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           MLPSSLAQDSP+DFVNAHN AR+QVGVGPV WDERVASFARQYANQRINDC+LVHSGGPY
Sbjct: 20  MLPSSLAQDSPRDFVNAHNAARAQVGVGPVHWDERVASFARQYANQRINDCRLVHSGGPY 79

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GENIAWG PDLSGTAAVQMWVNEKQFY+YG+NTCA+GKVCGHYTQVVWRNSVRIGCAKVR
Sbjct: 80  GENIAWGMPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVCGHYTQVVWRNSVRIGCAKVR 139

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           CTNN GTFIICNYEPRGNIIGQ+PY
Sbjct: 140 CTNNRGTFIICNYEPRGNIIGQKPY 164

[Close]

BLAST of Lsi03G006060 vs. NCBI nr
Match: gi|778724783|ref|XP_011658861.1| (PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 8.8e-72
Identity = 123/145 (84.83%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           MLPSSLAQDSPQDF++AHN AR+Q GV PVQWDE VASFA QYANQRINDC LVHSGGPY
Sbjct: 20  MLPSSLAQDSPQDFLDAHNTARAQDGVEPVQWDETVASFALQYANQRINDCSLVHSGGPY 79

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GENIAWG PDLSGTAAV+MWVNEK+FYDYG+NTCA+ +VCGHYTQVVWRNSVRIGCAKV 
Sbjct: 80  GENIAWGMPDLSGTAAVEMWVNEKEFYDYGSNTCAASRVCGHYTQVVWRNSVRIGCAKVI 139

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           CTNNGGTFI CNY+P GN +GQRPY
Sbjct: 140 CTNNGGTFITCNYDPPGNFVGQRPY 164

[Close]

BLAST of Lsi03G006060 vs. NCBI nr
Match: gi|377347202|dbj|BAL63012.1| (pathogenesis-related protein 1-1a, partial [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 8   QDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPYGENIAWG 67
           QDSP+DFVNAHN AR+QVGVGPV WDERVASFARQYANQRINDC+LVHSGGPYGENIAWG
Sbjct: 1   QDSPRDFVNAHNAARAQVGVGPVHWDERVASFARQYANQRINDCRLVHSGGPYGENIAWG 60

Query: 68  WPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVRCTNNGGT 127
            PDLSGTAAVQMWVNEKQFY+YG+NTCA+GKVCGHYTQVVWRNSVRIGCAKVRCTNN GT
Sbjct: 61  MPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVCGHYTQVVWRNSVRIGCAKVRCTNNRGT 120

Query: 128 FIICNYEPRG 138
           FIICNYEPRG
Sbjct: 121 FIICNYEPRG 130

[Close]

BLAST of Lsi03G006060 vs. NCBI nr
Match: gi|659110127|ref|XP_008455062.1| (PREDICTED: pathogenesis-related protein 1-like [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 8.5e-67
Identity = 111/145 (76.55%), Postives = 131/145 (90.34%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           MLPSSLAQDSPQD++N HN AR+ V V  +QWDE+VA+++RQYAN R+NDC+LVHS GPY
Sbjct: 19  MLPSSLAQDSPQDYLNGHNQARAAVRVRLIQWDEKVANYSRQYANLRMNDCRLVHSNGPY 78

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GENIAWG PDLSGT AV++WVNEKQ+YDY TN+CASGKVCGHYTQVVW+NSVR+GCAKV+
Sbjct: 79  GENIAWGSPDLSGTDAVKLWVNEKQYYDYNTNSCASGKVCGHYTQVVWKNSVRLGCAKVK 138

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           C N GG FI+CNY+PRGNI+GQRPY
Sbjct: 139 CRNKGGVFIVCNYDPRGNIVGQRPY 163

[Close]

BLAST of Lsi03G006060 vs. NCBI nr
Match: gi|778724786|ref|XP_004136929.2| (PREDICTED: pathogenesis-related protein 1-like [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-66
Identity = 108/145 (74.48%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MLPSSLAQDSPQDFVNAHNVARSQVGVGPVQWDERVASFARQYANQRINDCKLVHSGGPY 60
           MLPSSLAQDSPQD+VN+HN AR+ VGVGP++WDE+VA+++R YAN+R+NDC+LVHS GPY
Sbjct: 19  MLPSSLAQDSPQDYVNSHNHARAAVGVGPIKWDEKVANYSRYYANKRMNDCRLVHSNGPY 78

Query: 61  GENIAWGWPDLSGTAAVQMWVNEKQFYDYGTNTCASGKVCGHYTQVVWRNSVRIGCAKVR 120
           GENIAWG PDLSG  AV++WV+EKQ+Y+Y +N+CASGKVCGHYTQVVW+NS+R+GCAKV+
Sbjct: 79  GENIAWGSPDLSGINAVKLWVDEKQYYNYNSNSCASGKVCGHYTQVVWKNSMRLGCAKVK 138

Query: 121 CTNNGGTFIICNYEPRGNIIGQRPY 146
           C N GG FI+CNY+PRGNI+GQRPY
Sbjct: 139 CKNKGGAFIVCNYDPRGNIVGQRPY 163

The following BLAST results are available for this feature:

BLAST of Lsi03G006060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PR1_HORVU	3.0e-56	67.35	Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1	[more]
PR12_HORVU	5.2e-56	66.67	Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1	[more]
PR13_HORVU	8.8e-56	65.99	Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1	[more]
PR1_ARATH	2.6e-55	66.90	Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1	[more]
PRB1_TOBAC	1.3e-54	64.14	Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1	[more]

BLAST of Lsi03G006060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6A4_CUCSA	6.1e-72	84.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070253 PE=3 SV=1	[more]
H3K3Z1_CUCME	7.5e-70	92.31	Pathogenesis-related protein 1-1a (Fragment) OS=Cucumis melo GN=PR1-1a PE=2 SV=1	[more]
A0A0A0K2V9_CUCSA	7.7e-67	74.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070255 PE=3 SV=1	[more]
Q8S3W2_CUCSA	1.4e-63	78.57	Pathogenesis-related protein 1-1a (Fragment) OS=Cucumis sativus GN=PR1-1a PE=4 S...	[more]
W9R7L7_9ROSA	5.2e-63	74.48	Uncharacterized protein OS=Morus notabilis GN=L484_003726 PE=3 SV=1	[more]

BLAST of Lsi03G006060 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14610.1	1.4e-56	66.90	pathogenesis-related gene 1	[more]
AT2G14580.1	1.2e-55	70.50	basic pathogenesis-related protein 1	[more]
AT4G33720.1	3.9e-54	66.19	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT3G19690.1	1.2e-50	60.14	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-r...	[more]
AT2G19990.1	1.8e-46	54.81	pathogenesis-related protein-1-like	[more]

BLAST of Lsi03G006060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110129\|ref\|XP_008455064.1\|	2.8e-78	92.41	PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo]	[more]
gi\|778724783\|ref\|XP_011658861.1\|	8.8e-72	84.83	PREDICTED: basic form of pathogenesis-related protein 1-like [Cucumis sativus]	[more]
gi\|377347202\|dbj\|BAL63012.1\|	1.1e-69	92.31	pathogenesis-related protein 1-1a, partial [Cucumis melo]	[more]
gi\|659110127\|ref\|XP_008455062.1\|	8.5e-67	76.55	PREDICTED: pathogenesis-related protein 1-like [Cucumis melo]	[more]
gi\|778724786\|ref\|XP_004136929.2\|	1.1e-66	74.48	PREDICTED: pathogenesis-related protein 1-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR018244	Allrgn_V5/Tpx1_CS
IPR014044	CAP_domain
IPR001283	Allrgn_V5/Tpx1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006060.1	Lsi03G006060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PRINTS	PR00837	V5TPXLIKE	coord: 76..89 score: 1.8E-20coord: 30..48 score: 1.8E-20coord: 100..116 score: 1.8E-20coord: 128..141 score: 1.8
IPR001283	Cysteine-rich secretory protein, allergen V5/Tpx-1-related	PANTHER	PTHR10334	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	coord: 1..145 score: 2.1
IPR014044	CAP domain	GENE3D	G3DSA:3.40.33.10		coord: 5..145 score: 4.4
IPR014044	CAP domain	PFAM	PF00188	CAP	coord: 15..133 score: 2.1
IPR014044	CAP domain	SMART	SM00198	SCP_3	coord: 9..141 score: 7.0
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 7..145 score: 6.67
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01009	CRISP_1	coord: 101..111 scor
IPR018244	Allergen V5/Tpx-1-related, conserved site	PROSITE	PS01010	CRISP_2	coord: 128..139 scor
None	No IPR available	PANTHER	PTHR10334:SF223	F2J10.6 PROTEIN-RELATED	coord: 1..145 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G006060	CmaCh11G016900	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006060	CmaCh19G005320	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006060	CmoCh11G014300	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006060	Cla001621	Watermelon (97103) v1	lsiwmB268
Lsi03G006060	MELO3C018536	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006060	ClCG02G007190	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006060	Cla97C02G034010	Watermelon (97103) v2	lsiwmbB226
Lsi03G006060	Cp4.1LG04g07420	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006060	CsGy7G006210	Cucumber (Gy14) v2	cgyblsiB488
Lsi03G006060	CsaV3_7G007630	Cucumber (Chinese Long) v3	cuclsiB555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006060	Wax gourd	lsiwgoB307
Lsi03G006060	Wax gourd	lsiwgoB319
Lsi03G006060	Wax gourd	lsiwgoB320
Lsi03G006060	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G006060	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006060	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G006060	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006060	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006060	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006060	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006060	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006060	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006060	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006060	Watermelon (97103) v1	lsiwmB245
Lsi03G006060	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G006060	Melon (DHL92) v3.6.1	lsimedB281