Lsi03G006030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G006030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Location	chr03 : 7539878 .. 7540114 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTTTTAAACTCATCTCCCTTTCTCTTATTCTCTCTGCAATCAGCTTCACCATGCTTCCCTACTCTTCTGCCCAAGACTCAATTCAAGACTTCGTGGATGCCCACAACGCTGCTCGTGCCAAAGTCGGAGTCGGGCCTGTCCATTGGTGCATTCTGGCGGACCTTACGGGGAAAATATTGCATGGGGCAGCAGCAACATGGCAGGCACCACCGCAGTTCGTTTATGGGTGA

mRNA sequence

ATGGATCTTTTTAAACTCATCTCCCTTTCTCTTATTCTCTCTGCAATCAGCTTCACCATGCTTCCCTACTCTTCTGCCCAAGACTCAATTCAAGACTTCGTGGATGCCCACAACGCTGCTCGTGCCAAAGTCGGAGTCGGGCCTGTCCATTGGTGCATTCTGGCGGACCTTACGGGGAAAATATTGCATGGGGCAGCAGCAACATGGCAGGCACCACCGCAGTTCGTTTATGGGTGA

Coding sequence (CDS)

ATGGATCTTTTTAAACTCATCTCCCTTTCTCTTATTCTCTCTGCAATCAGCTTCACCATGCTTCCCTACTCTTCTGCCCAAGACTCAATTCAAGACTTCGTGGATGCCCACAACGCTGCTCGTGCCAAAGTCGGAGTCGGGCCTGTCCATTGGTGCATTCTGGCGGACCTTACGGGGAAAATATTGCATGGGGCAGCAGCAACATGGCAGGCACCACCGCAGTTCGTTTATGGGTGA

Protein sequence

MDLFKLISLSLILSAISFTMLPYSSAQDSIQDFVDAHNAARAKVGVGPVHWCILADLTGKILHGAAATWQAPPQFVYG

Homology

[Close]

BLAST of Lsi03G006030 vs. TrEMBL
Match: A0A0A0K2D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070510 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.9e-13
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1  MDLFKLISLSLILSAISF---TMLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          MDLFK ISLSL+LS +SF   +MLP+SSAQDSIQ+FVDAHN ARA+VGVGPVHW
Sbjct: 1  MDLFKYISLSLLLSPLSFIMLSMLPFSSAQDSIQNFVDAHNTARAEVGVGPVHW 54

[Close]

BLAST of Lsi03G006030 vs. TrEMBL
Match: B2CZ52_CUCME (Pathogen-related protein 1 OS=Cucumis melo var. inodorus GN=Cuc m 3 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-07
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 20 MLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          MLP+S AQDSI+DFVDAHNAARA+VGVGPVHW
Sbjct: 1  MLPFSFAQDSIKDFVDAHNAARAQVGVGPVHW 32

[Close]

BLAST of Lsi03G006030 vs. TrEMBL
Match: B2ZPN3_CUCME (Pathogen-related protein 1 alternative isoform OS=Cucumis melo var. inodorus PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-07
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 20 MLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          MLP+S AQDSI+DFVDAHNAARA+VGVGPVHW
Sbjct: 1  MLPFSFAQDSIKDFVDAHNAARAQVGVGPVHW 32

[Close]

BLAST of Lsi03G006030 vs. NCBI nr
Match: gi|778724791|ref|XP_011658862.1| (PREDICTED: pathogenesis-related protein 1C-like [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-13
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1  MDLFKLISLSLILSAISF---TMLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          MDLFK ISLSL+LS +SF   +MLP+SSAQDSIQ+FVDAHN ARA+VGVGPVHW
Sbjct: 1  MDLFKYISLSLLLSPLSFIMLSMLPFSSAQDSIQNFVDAHNTARAEVGVGPVHW 54

[Close]

BLAST of Lsi03G006030 vs. NCBI nr
Match: gi|700188602|gb|KGN43835.1| (hypothetical protein Csa_7G070510 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 8.5e-13
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1  MDLFKLISLSLILSAISF---TMLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          MDLFK ISLSL+LS +SF   +MLP+SSAQDSIQ+FVDAHN ARA+VGVGPVHW
Sbjct: 1  MDLFKYISLSLLLSPLSFIMLSMLPFSSAQDSIQNFVDAHNTARAEVGVGPVHW 54

[Close]

BLAST of Lsi03G006030 vs. NCBI nr
Match: gi|659110123|ref|XP_008455060.1| (PREDICTED: pathogenesis-related protein PRB1-3-like [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1  MDLFKLISLSLILSA--ISFTMLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          M+LFK ISLSLILS   I+F MLP+S AQDSI+DFVDAHNAARA+VGVGPVHW
Sbjct: 1  MNLFKYISLSLILSPLIINFLMLPFSFAQDSIKDFVDAHNAARAQVGVGPVHW 53

[Close]

BLAST of Lsi03G006030 vs. NCBI nr
Match: gi|659110133|ref|XP_008455066.1| (PREDICTED: basic form of pathogenesis-related protein 1 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 2  DLFKLISLSLILSAISFTMLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          DL K+ISLSL+    S T+   S AQDS QDFVDAHNAARA+VGVGPV W
Sbjct: 3  DLLKMISLSLLFFLTSSTIFTSSIAQDSPQDFVDAHNAARAQVGVGPVSW 52

[Close]

BLAST of Lsi03G006030 vs. NCBI nr
Match: gi|171464770|gb|ACB45874.1| (pathogen-related protein 1 [Cucumis melo var. inodorus])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1


Query: 20 MLPYSSAQDSIQDFVDAHNAARAKVGVGPVHW 52
          MLP+S AQDSI+DFVDAHNAARA+VGVGPVHW
Sbjct: 1  MLPFSFAQDSIKDFVDAHNAARAQVGVGPVHW 32

The following BLAST results are available for this feature:

BLAST of Lsi03G006030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G006030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2D5_CUCSA	5.9e-13	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070510 PE=3 SV=1	[more]
B2CZ52_CUCME	1.3e-07	87.50	Pathogen-related protein 1 OS=Cucumis melo var. inodorus GN=Cuc m 3 PE=2 SV=1	[more]
B2ZPN3_CUCME	1.3e-07	87.50	Pathogen-related protein 1 alternative isoform OS=Cucumis melo var. inodorus PE=...	[more]

BLAST of Lsi03G006030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G006030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724791\|ref\|XP_011658862.1\|	8.5e-13	77.78	PREDICTED: pathogenesis-related protein 1C-like [Cucumis sativus]	[more]
gi\|700188602\|gb\|KGN43835.1\|	8.5e-13	77.78	hypothetical protein Csa_7G070510 [Cucumis sativus]	[more]
gi\|659110123\|ref\|XP_008455060.1\|	4.2e-12	79.25	PREDICTED: pathogenesis-related protein PRB1-3-like [Cucumis melo]	[more]
gi\|659110133\|ref\|XP_008455066.1\|	1.1e-07	68.00	PREDICTED: basic form of pathogenesis-related protein 1 [Cucumis melo]	[more]
gi\|171464770\|gb\|ACB45874.1\|	1.8e-07	87.50	pathogen-related protein 1 [Cucumis melo var. inodorus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014044	CAP_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G006030.1	Lsi03G006030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014044	CAP domain	unknown	SSF55797	PR-1-like	coord: 17..51 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G006030	MELO3C018536.2	Melon (DHL92) v3.6.1	lsimedB260

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G006030	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G006030	Cucumber (Gy14) v1	cgylsiB367
Lsi03G006030	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G006030	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G006030	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G006030	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G006030	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G006030	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G006030	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G006030	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G006030	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G006030	Cucumber (Chinese Long) v2	culsiB522
Lsi03G006030	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G006030	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G006030	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G006030	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G006030	Watermelon (97103) v1	lsiwmB245
Lsi03G006030	Watermelon (97103) v1	lsiwmB268
Lsi03G006030	Cucumber (Gy14) v2	cgyblsiB488
Lsi03G006030	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G006030	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G006030	Watermelon (97103) v2	lsiwmbB226
Lsi03G006030	Wax gourd	lsiwgoB307
Lsi03G006030	Wax gourd	lsiwgoB319
Lsi03G006030	Wax gourd	lsiwgoB320