Lsi03G005960 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G005960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 7388502 .. 7390039 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAGTTCAACCTACCAAAACCAATTTAACACCATGAGACAATCCTCTCTATCTGGAAACCAAAGGCAAAAGAATCAGTTAAGCCAATTCCTTCTCTCTTAATTCTTAGAAATAATTCAAATTACTATATATTCAAAGTTTTAAAATTACATGATAAATAGTTTGTTGTGTTTTTCCTTTGTTTCTATCTACATTAACAAAGGCATTTTCTTTAACGATACCAACTCGATGGGTTAAAGTTTATTCAATAGACATATGATCTCAAAATCTTGCTAGTTCCTAAACTTTAAAAAATATGATCGAAATTTTAGAGTTTAAATTGGGGTAGTTTAACCTAAAGTTTATGTTTATTTAGTTCCTCAACTTTAAAAAATGACATATAAAAACTTTATACTCTTAAGTTATGTATGTAATTCTTAAAAAGAGTATAACAAATCATTAACCTATTCGACATTTTTTAAAATTCATAGACACAGATTCGAAGTTTTTATAAACGTATTGGACAAAAAAATTAATTCTATATCTAATACATTAGTTATTGGGAGATTTTCACAGATAGAAAAAAATGTCAAACTATTTACAGAAAATAACAAAAAAAAAAAATACTGATAGACATTGATAGACTTTTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATCACTGATAGACTCTGATAAACTTCTATCAACGTCTATCACAACTATCTAAAATTTTGCTATTTTGTGTAAATAGTTTCCTTTATTTTTCTATTTTTAAAAATTTTCCTTAGTTATTTTTAAACATTTTTATATTTGCATGTCAAGGATCTCTATTATACACAAAACTAAACTCTCATATGCTCATTTAGACATTTTTAGTCATTTTTCGAAATCTTTTAGGAGCAAAATTGAAAGTTTGAGCACCTATTAGACAATTTTTTTTAATGTCGATAGAAGTTTAAGTTACAAATTTAAAAGTACAGTGACTAGAGACTTACAATTTAACCGTCATTATTATTTTGAAATAATCTTTTTTATGGGGGATATGTTATCATATAAACTTGTGATTTAATTCTAAAATCATTTTTCTTTTGTTATCTTCTCCTTGATGTAGGTGGTTTAAAGGGAAGAGATCAGGATTGAGATAGTCTAGATTTGCTTGTCAATGATGAGTTTGGTAATGGAGTGATCAGGAAACTATTAAGAGTAATTGTCACAATATGATTACAAAACTCTCATATATATAACAATTTAGGGTGTTCATTGAGATATTAAAAGGGAGTTTTTTTTTCTCAAAAAAATAAATTATTATTATTATTATAAATCTATCTGTAAGGTGGCACTGAATAATTTCTTGAAGGAAAAAGAAAAGTTTTTTTTATTTATTTTTTTTTATTTTTTTTATTTTGGACATTGAATTTCTTGTCAATGGGATTGTACTACTTTTTCTGTAGCCATGAGGCACTGAAAAAAATGACAATTATTGTTGTACTAAATGAACATGTATGTTTGTAAAGAACATGTATGTTTGTAAAGAGAGGATGAAAATAAT

mRNA sequence

GAGAGTTCAACCTACCAAAACCAATTTAACACCATGAGACAATCCTCTCTATCTGGAAACCAAAGGCAAAAGAATCAGTGGTTTAAAGGGAAGAGATCAGGATTGAGATAGTCTAGATTTGCTTGTCAATGATGAGTTTGGTAATGGAGTGATCAGGAAACTATTAAGAGTAATTGTCACAATATGATTACAAAACTCTCATATATATAACAATTTAGGGTGTTCATTGAGATATTAAAAGGGAGTTTTTTTTTCTCAAAAAAATAAATTATTATTATTATTATAAATCTATCTGTAAGGTGGCACTGAATAATTTCTTGAAGGAAAAAGAAAAGTTTTTTTTATTTATTTTTTTTTATTTTTTTTATTTTGGACATTGAATTTCTTGTCAATGGGATTGTACTACTTTTTCTGTAGCCATGAGGCACTGAAAAAAATGACAATTATTGTTGTACTAAATGAACATGTATGTTTGTAAAGAACATGTATGTTTGTAAAGAGAGGATGAAAATAAT

Coding sequence (CDS)

GAGAGTTCAACCTACCAAAACCAATTTAACACCATGAGACAATCCTCTCTATCTGGAAACCAAAGGCAAAAGAATCAGTGGTTTAAAGGGAAGAGATCAGGATTGAGATAG

Protein sequence

ESSTYQNQFNTMRQSSLSGNQRQKNQWFKGKRSGLR
Homology
[Close]
BLAST of Lsi03G005960 vs. TrEMBL
Match: A0A0A0K6B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070820 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-07
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 1   ESSTYQNQFNTMRQSSLSGNQRQKNQWFKGKRSGLR 37
           E+S+YQNQFNT+R+SS SGNQRQKNQWFKGKRSGLR
Sbjct: 144 ENSSYQNQFNTIRKSSPSGNQRQKNQWFKGKRSGLR 179

[Close]
BLAST of Lsi03G005960 vs. NCBI nr
Match: gi|778730190|ref|XP_011659723.1| (PREDICTED: uncharacterized protein LOC105436243 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-07
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 

Query: 1   ESSTYQNQFNTMRQSSLSGNQRQKNQWFKGKRSGLR 37
           E+S+YQNQFNT+R+SS SGNQRQKNQWFKGKRSGLR
Sbjct: 144 ENSSYQNQFNTIRKSSPSGNQRQKNQWFKGKRSGLR 179

[Close]
BLAST of Lsi03G005960 vs. NCBI nr
Match: gi|659110101|ref|XP_008455048.1| (PREDICTED: uncharacterized protein LOC103495318 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-07
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1 

Query: 1   ESSTYQNQFNTMRQSSLSGNQRQKNQWFKG-KRSGLR 37
           E+STYQNQFN++R+SSLSGNQRQKNQWFKG KRSGLR
Sbjct: 135 ENSTYQNQFNSIRKSSLSGNQRQKNQWFKGKKRSGLR 171

The following BLAST results are available for this feature:
BLAST of Lsi03G005960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G005960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6B3_CUCSA1.7e-0786.11Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070820 PE=4 SV=1[more]
BLAST of Lsi03G005960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G005960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730190|ref|XP_011659723.1|2.5e-0786.11PREDICTED: uncharacterized protein LOC105436243 [Cucumis sativus][more]
gi|659110101|ref|XP_008455048.1|9.3e-0786.49PREDICTED: uncharacterized protein LOC103495318 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G005960.1Lsi03G005960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G005960MELO3C018527Melon (DHL92) v3.5.1lsimeB247
Lsi03G005960ClCG02G007090Watermelon (Charleston Gray)lsiwcgB233
Lsi03G005960MELO3C018527.2Melon (DHL92) v3.6.1lsimedB260
Lsi03G005960Cla97C02G033930Watermelon (97103) v2lsiwmbB226
Lsi03G005960Bhi05G000876Wax gourdlsiwgoB320
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G005960Melon (DHL92) v3.6.1lsimedB281
Lsi03G005960Silver-seed gourdcarlsiB342
Lsi03G005960Silver-seed gourdcarlsiB411
Lsi03G005960Silver-seed gourdcarlsiB672
Lsi03G005960Cucumber (Chinese Long) v3cuclsiB555
Lsi03G005960Wax gourdlsiwgoB307
Lsi03G005960Bottle gourd (USVL1VR-Ls)lsilsiB126
Lsi03G005960Cucumber (Gy14) v1cgylsiB367
Lsi03G005960Cucurbita maxima (Rimu)cmalsiB116
Lsi03G005960Cucurbita maxima (Rimu)cmalsiB484
Lsi03G005960Cucurbita maxima (Rimu)cmalsiB662
Lsi03G005960Cucurbita moschata (Rifu)cmolsiB103
Lsi03G005960Cucurbita moschata (Rifu)cmolsiB468
Lsi03G005960Cucurbita moschata (Rifu)cmolsiB650
Lsi03G005960Cucurbita pepo (Zucchini)cpelsiB208
Lsi03G005960Cucurbita pepo (Zucchini)cpelsiB543
Lsi03G005960Wild cucumber (PI 183967)cpilsiB536
Lsi03G005960Cucumber (Chinese Long) v2culsiB522
Lsi03G005960Melon (DHL92) v3.5.1lsimeB268
Lsi03G005960Watermelon (Charleston Gray)lsiwcgB223
Lsi03G005960Watermelon (97103) v1lsiwmB245
Lsi03G005960Watermelon (97103) v1lsiwmB268
Lsi03G005960Cucumber (Gy14) v2cgyblsiB488