Lsi03G005950 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G005950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 7372611 .. 7378907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATAATGCTTACAATTTCAATGGAGAGGAGGGTTAGGGGTTTAATCCCCCATTAAAGAATAATCAGAAAGAAGTTGAAAAATTAAAGATGAGTTTTCATGAGCAGCAACCACCTCCTGTTGGGGTTCCTCCTCCTCAAGGTAGGCCTCAAATTTTTAATTTTTTCTTCAAATCTCTTCTTTTTTTTCTTTTTTTTTTTTGTAAAAAAAACAAAATTGGTTGAAAATCTTGTGGTCTTGATGAGGGTTATTTCAAACATTGACTTTTGTAGAGCTAGTAGAGTTTAAACCGTTTCAAATCATCAATTAAAAAGTGTCAATAGGTCGTGTCTAAACTTACGATTTTATCTTCAATAAATTTCTAAACTTCAAGAAGTGTTTAATAAATTCATAAACTTTTAATTTTAATTATGTCTAATAGGACGTCATGTGCTAAACAAACACAAATTTAAAAGTTTATGTTAAATTACAAGTTTAGAGACGAAATAGAGGTATTTATGTTTGACAATTTAACGCGACAACTTAAATAGAAACTTATAGAAACTTTTATTGAAGTTTTATAGTTATCAATATATGTATGTTTCAATTAATAATTTGTTTTGAAAGTGTAAATGAAAGTTTTATTGATGATTTTTGGTTAAGAGTGTCAACTAAACAAAGAATACATGCGTCAAGTAGTGATTGTTAGATGATAAATTACAAGTTAATTAGCTCCTAAACTTTCAAATTTGTGTCTATATTTCATCTTTAAACTTTGAAAATTGTCTAATATATCCTTAAACTTTTAATATTTTGTTAAATGGCTCCCAAAACTTTAAAGGTTCCCAATAAATATTTAAACTTTCAATTGTACTTTTAAAAAGTGTCTATTAGATACAAAATTGACAATTTAGGGACGTATTAGACACAAAATTTAAAGTTTAGAAACTTATTAGACACAAAACTCAAAGTTTAGGATCTAGCTATCAGACACTTTTAAAGGTTTATAGATAAAAAAAAAAAATTGACACAAATTCAAAAGTCAAAGGGACTAAACTTGTAATTTAACAAAAATTATAAGTGCCGCCAAATTGTTACAAATAAAAACCTAAGAATCAAAACATTAAAAAAATAGCCAAAATGAGCTTAGCTCAACAATAATTGACATGACTTTCTTCCCTAGAAGTCGAAGGTTCGATCCTTATTTCCGCAATTGTTATACTATAAAAATAGAGTAAAAGTATATATCTAGATATATCCATTGTTAGCATAATAGTTTAACTTTGGTTGATTTAATTGGGTTTAAAATGTATATTTATTTGTGACATTGACATGAAAAACATACAAACTATATTATATTTATTGACATGAAGGTTATCCTCCGGGAGCTTATCCACCACCATCATGTCCTCCTCTACATGATAATCCAGCACAAGGAAATCCCCAACCAAATTTAGCATATCCTCTACAAGAATATTCTTATTCATATTCTCCTTATCCTTCACAAGGATATCCCTATCCCTACCAAGGTTACCCTCCACAAGGATATCCACCCCTACAATATCCTCCCACAAACTCTCATAATCAATGTACCTATGTTGTAGTTCAATCTCGACAACAACAACAAGAACAACAAACTTATGGTTACTGGGAAAGCTGGTACGTTTCTCTTTATTCTTCTTTTTCAAACCATTTTATTTCTCTTCTCGTCAACAACTTTAACAATATTGAATTATATGACTTAGTTTGAGATTATCGTAGCTTTTAAAATAATTTCTAATGACTGTGTTTTTAGAAAAGTCAGTTGTAATATGAAGCAAATTAGTGTTCGGTAAATTTTAGTTTTAGATGTGAATAAATTATTTATAATATTTCGTAAATAAATACTAAATTATTGTATTTTAGATATAATGACTAAAATAAATTTGCTATTAATTTTTTTCTACAATGCAATTTTTTTAATCTAGATTAGTTGTTAAGTAACAAGGGAAATAGCTTTAATTTTGTAAAAAAAATCAATATGGTACGATTTTTTTTAATAGTTGCATTAAAATATATATATATATATATATATATATATATATATATATATGAAATAGATTTTGCTATTATGTCTTTTAAGTTTGAAGGATAAAAATGAAAGTTTATTAAAAAAGTGAAATATGATTCTGCGAGAATCTAAAAACTAGTGGAAAACTGATTTTCAAAACTATGTGAAATGAATGTGAGTTTTAAAAGTAATTTTATTGGATTTAATCTCAATATGTTTTACCAAACACAACGACGGTTCAGATTCTTTAAATATCACTTTTATCCTTCTCAAAATCAATCTCAAATGCGGATCTTGTATCCAACTCGATTTCATCTATGGTTAGGTTAATAATTGAGTTAAATTGAGTTGGATTCTAACAAGTTTAATCTCCTTTGGATTAAGATTAATTGTGTTGGATTTTTTTTAATGTTGTTTTGCTTATTGCTTTATGTTTTATTGTTATTTTTTTATATCATCTGACATGCCGTTGAACTTTTAAATATTTAACTTGAATCGTCAACTTTTATTTACTTTCTAGTTTAACAGACTCTTAACATTTAAAATTGTAGACCCATATATTTTCATTATATTGCATGTTTAGTTTCTATCATAAAGGCATAATAATCTATATGTCAAATGACACATGCGTATAATGAATAATAAGAATTATGTCACACTTTCAAGAAATTAGGCATAACATATTTATCGTCGAAACAATGTGAAATTAATTTTTTTTTAAAATAAAATAAATGGTGCTTTCAAGTTGGATCTTATTTGGTTTTCAAACTTTCAATTTTACATTTTATAGGCCTCTAATATATGTATTTTAACTTTTAAATTTGTGTCCGTTCCTACCTATACAAATAATTAAAAAATTAATTAGTTGAACTAATAGATATAAAATTGAATTTATAATTTGAATATTATAACTTTGGCTTAAATACGAACTTGGCAGCTTGGCTCTCATTTGTTGTTGCTGCCTTTGGAATCTTGGACTTGGATGCCTCTATTGAGATGAGGAGCTTGCATGGTATTCCATTGAATAAATAAATAAATAAAAACTTGTTTAATGTCAACTTCTTAATTTCTTTCTTTTTATTTCTAATTTATGTAATGTCAAGTTGGTGCACTAGTACATAACAAATCTTCCTTTTTCTGTTTTTCATGAAATCAACTTTTATTTTCAAGTTTATGTTTTTAAAATAACTAATCAAACGCATTTATTAAAAAAAAAATTCAAATATATAATATCTTTAACTAGTCAAATAAGCTTAAATTTTCTTTGAAATTGGAGAACTTGATGCCTCTATTAACAGGTGGAATAAATATGACTAAATATGGAATATATATATATATATATATATATATATATATACTAAATAGAATAAACATGAAAATTGTTAGGTGTAAATTTAGGCTAAGGTCAAGACAATTTAGACTCAAAAAAATTAAACTACGACATGATCAACTCTGAAGACTATAGAACATAGCCCAAGGCCTAGGGTAAAGCAAGCCACGAGAGCTAAAAAGTTTGTGAGCCCTTCCCAGGTATGGTCGACGAGATCCGAGGGAGAGGTGGGTTTTATTGACCCAAGGTGTGCAACTCATGAATCGAGATTAATCTGATAAACCCATATTTAACCTTACCATTTTGAACCAATGAGGAATAAAAAAAATCCCAAGCAATTCGACCGATATATATGTCACTATAACTCGATAAGGGATAAGTTCATTCTAATTCTCAAAAGTCTTTATACATCTTAAAACTTCTAAATTAACTTAAACATATTGAAGATGGTTTATATATGGTAAGCACCAATCTGGTGTTTTCAAATTCATTGTTTTGTAGGTCACCTCTTCCTCGAAATTTAAATTTAAAAAATTATCGTTAAATAATAAGGTAAATTTTTCTACTACAAATTTAACATAAACATAAATATTTTGTGGCAATATAACTAACCATTTGTTAAATAGAGGTTTTTTTTTTTTTTTTTTGAATATAACAATTGGGTGTAGAGGGATTTGAACTATAAATTTTGTGGTTACTAGTACATTCGAATGTCAATTGTGTTAAGTAGAGTTGCAACTCAACAAAATGGAACCTGTTAATTTTTGTATAAAAAAGAAAAAAAAAACAAAACCAAAACCAAATTTACGCCATTTGTGTAAATTTTAATAATTTTAGATGTGTGAAACTTGTATTTAATTATATTTTTTTAATGTGATAGATAATCTTACTATAATTTAAAGATATAATATTGGTGGGAGACATAAAATGAATTTAGAGCACCAATAAAATGTATTTCATTCCTTATTTCTCAGGGTTAGCCCTCATTTTCACCAAAGTTAGAATCAACCTCAAACCTATATGTAATATATAGGAGTACATATTTGTGTGTAATGTTATCACTTTATGAGATATAATGCATATATATATATATATATATATATATGGAGTTTATTTCCAGATTGTGTATCCAACTCTCGAACTACATATGAATTTGTTTCAAATAATTTGAGAATGACTTTTATTTTTTATAATTATGCCCTAATTAATTATATTCTTCATATGTTTGCATCAATGTTAGAATCAACAACAAATATATATATATATATATATATATATATATATATATATATAGGAAAACATATTTATGTATACACTATTGTCATTGTATATATATATATGTATAAGAAAACATATTTATGTATACACTATTGTCATTGTATGAGAGTACAGTGATATATGATGTAAATATACTAATCATGCTTCCAAATATGAGAAATATATATATGTGGTCTCCTTGCATATATAGCAAAATGAATTTAAAATATTGTAAAGATAGCCAAATTTACCTTCAGATCATAGAAAATGTCCAAAAAGCCCATTAAAGATACAAAAATACGCTTGAGGCACGAAATTCGCAGTTTTTGAAGTCTATCACTAACATACTCACTGCTATCTGTGATAGAAGTCTATCATTGATAGACTCCTTAAAACTAATTGCAAATATAGCAATATTTAGCTTTAATCATTTAGCTCATAGAAAATGTCCAGAAAAACTCATTGAAGGGATGATTCCTCATTTTTAGAGTCTAATTGACAGATTTCTATCACTCATTAATAGACTCCTTTTATAGAAGTCTATCACTGATACCACACTATTACCGACAAGTTTTCTATTACCGATATTTTTGTATAACTAATATAATTCTATCAAGGGAATATAATAGTCTATCAATGATAAGTATCTATCACCAATATTTTTGTATCATTAATATGATTGAAGATAATGTTCTCAACCATGAAGAAGGTGAGGCAAATACAAAAATGGAGAATAGTGATCTAAGCCCAAAGTCAATCTCTTCTTCAAATGTGTCATCATTAGCAAATGAAGGAGGGAGAATATGACAAGCTCTAGCTTACTTAAATGATTATGTTGCCAGAGAGAGGCTTTCAGAAGAAGAAAATACTAAAGCTTACATGGCTCAAATTTACACGGACATGGTCAATTTTAAAGAAACGACAAAATGTCCTCAATGGAATTTGGCAATGGATGTTTAGATGGCTGTAATTGAGAAAAATGACACATGAAAGTTGGCTGAATTGTCGGTAGGTGCAAGAATAATTGGGGTGAAATGAATTTATAAGACAAAACTCAATGAACATGAAGAGGTGGATAAATATAAAGTAACATTTGTGACTAAGGGTTTTATTCACCACAACAATGAGTGGATTATTTTGAAGTTTATGCACCAGTTTCAAGAATTGATATAGTCGTATGATATTATCTTCGACAACACAAAAATGATGGAAAGTTCTTCAACTTTATGTAAAGCTTGCTTTTCTTCATGGAAAATTAAGTGAAGATGTCTATGAGCAACCAATGGATTATGCGTATAAAGGGAGTGAGCATAAAGTATATAACCTGAGAAAGATATTGTACAACTTAAAACAAACTCCTCAAGCTTGGTTTAGTAGATTGGAAACATACTTTGAGGAAGAAAGTTTTTTTAGATGCTATAGTGAATAACTCTTTTATTTATGTTTAATTCTAAATAAAAACAAAGTGATTCAATGCTTCCATTGTAGGATAAAGTGATCATACCTTTTAGTTCAGTTTGGATTCTATGCATGCATTCGTGGTGGAGACAAATTCGCTTAGCATTGTCTAAGTCCTAAATTATGAAGAGGTTCATCTTACAGAGGTGGTTTCAATTTCCATAAAGATGCAAAGATTAGCGGTTGGGCAAGATACCACATATTCGTCAAGAGCAGAATTTGA

mRNA sequence

AAGATAATGCTTACAATTTCAATGGAGAGGAGGGTTAGGGGTTTAATCCCCCATTAAAGAATAATCAGAAAGAAGTTGAAAAATTAAAGATGAGTTTTCATGAGCAGCAACCACCTCCTGTTGGGGTTCCTCCTCCTCAAGGTTATCCTCCGGGAGCTTATCCACCACCATCATGTCCTCCTCTACATGATAATCCAGCACAAGGAAATCCCCAACCAAATTTAGCATATCCTCTACAAGAATATTCTTATTCATATTCTCCTTATCCTTCACAAGGATATCCCTATCCCTACCAAGGTTACCCTCCACAAGGATATCCACCCCTACAATATCCTCCCACAAACTCTCATAATCAATGTACCTATGTTGTAGTTCAATCTCGACAACAACAACAAGAACAACAAACTTATGGTTACTGGGAAAGCTGAGGTGGTTTCAATTTCCATAAAGATGCAAAGATTAGCGGTTGGGCAAGATACCACATATTCGTCAAGAGCAGAATTTGA

Coding sequence (CDS)

ATGAGTTTTCATGAGCAGCAACCACCTCCTGTTGGGGTTCCTCCTCCTCAAGGTTATCCTCCGGGAGCTTATCCACCACCATCATGTCCTCCTCTACATGATAATCCAGCACAAGGAAATCCCCAACCAAATTTAGCATATCCTCTACAAGAATATTCTTATTCATATTCTCCTTATCCTTCACAAGGATATCCCTATCCCTACCAAGGTTACCCTCCACAAGGATATCCACCCCTACAATATCCTCCCACAAACTCTCATAATCAATGTACCTATGTTGTAGTTCAATCTCGACAACAACAACAAGAACAACAAACTTATGGTTACTGGGAAAGCTGA

Protein sequence

MSFHEQQPPPVGVPPPQGYPPGAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQGYPYPYQGYPPQGYPPLQYPPTNSHNQCTYVVVQSRQQQQEQQTYGYWES

Homology

[Close]

BLAST of Lsi03G005950 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 43/84 (51.19%), Postives = 44/84 (52.38%), Query Frame = 1


Query: 9  PPVGVPPPQGYPPGAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQGYPYPY 68
          PPVGVPPPQGYPP  YP  + PP    P QG PQ                YP QGYP   
Sbjct: 7  PPVGVPPPQGYPPEGYPKDAYPP-QGYPPQGYPQQG--------------YPPQGYPQ-- 66

Query: 69 QGYPPQGYPP---LQYPPTNSHNQ 90
          QGYP QGYPP    QYPP   H Q
Sbjct: 67 QGYPQQGYPPPYAPQYPPPPQHQQ 73

[Close]

BLAST of Lsi03G005950 vs. TrEMBL
Match: C5WVH5_SORBI (Putative uncharacterized protein Sb01g031530 OS=Sorghum bicolor GN=Sb01g031530 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 49/90 (54.44%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1  MSFHEQQPPPVGVPPPQGYP-PGAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPY 60
          MS++ QQ PPVGVPPPQGYP   AYPPP  PP       G P P   YP Q Y       
Sbjct: 1  MSYYGQQQPPVGVPPPQGYPGKDAYPPPGYPPA------GYPPPAQGYPPQGYP------ 60

Query: 61 PSQGYPYPYQGYPPQGYPP--LQYPPTNSH 88
          P QGYP P QGYP QGYPP   Q PP   H
Sbjct: 61 PQQGYP-PQQGYPQQGYPPPYAQPPPPQQH 77

[Close]

BLAST of Lsi03G005950 vs. TrEMBL
Match: A0A078GBL6_BRANA (BnaC04g01870D protein OS=Brassica napus GN=BnaC04g01870D PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 49/83 (59.04%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 9  PPVGVPPPQGYPP-----GAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQG 68
          PPVGVPPPQGYPP      AYPP   PP    P QG P P   YP Q Y     P P QG
Sbjct: 4  PPVGVPPPQGYPPEGYSKDAYPPQGYPPQQGYPPQGYP-PQQGYPPQGYPPQGYP-PQQG 63

Query: 69 YPYPYQGYPPQGYPP---LQYPP 84
          YP P QGYPPQGYPP    QYPP
Sbjct: 64 YP-PQQGYPPQGYPPPYAPQYPP 83

[Close]

BLAST of Lsi03G005950 vs. TrEMBL
Match: A0A078CT52_BRANA (BnaA05g02190D protein OS=Brassica napus GN=BnaA05g02190D PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 49/83 (59.04%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 9  PPVGVPPPQGYPP-----GAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQG 68
          PPVGVPPPQGYPP      AYPP   PP    P QG P P   YP Q Y     P P QG
Sbjct: 4  PPVGVPPPQGYPPEGYSKDAYPPQGYPP-QGYPPQGYP-PQQGYPPQGYPPQGYP-PQQG 63

Query: 69 YPYPYQGYPPQGYPP---LQYPP 84
          YP P QGYPPQGYPP    QYPP
Sbjct: 64 YP-PQQGYPPQGYPPPYAPQYPP 82

[Close]

BLAST of Lsi03G005950 vs. TrEMBL
Match: M4CK87_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 49/83 (59.04%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 9  PPVGVPPPQGYPP-----GAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQG 68
          PPVGVPPPQGYPP      AYPP   PP    P QG P P   YP Q Y     P P QG
Sbjct: 4  PPVGVPPPQGYPPEGYSKDAYPPQGYPP-QGYPPQGYP-PQQGYPPQGYPPQGYP-PQQG 63

Query: 69 YPYPYQGYPPQGYPP---LQYPP 84
          YP P QGYPPQGYPP    QYPP
Sbjct: 64 YP-PQQGYPPQGYPPPYAPQYPP 82

[Close]

BLAST of Lsi03G005950 vs. TrEMBL
Match: A0A0D3BP41_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 49/85 (57.65%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 9   PPVGVPPPQGYPP-----GAYPPPSCP--PLHDNPAQGNPQPNLAYPLQEYSYSYSPYPS 68
           PPVGVPPPQGYPP      AYPP   P  P    P QG P P   YP Q Y     P P 
Sbjct: 83  PPVGVPPPQGYPPEGYSKDAYPPQGYPHPPQQGYPPQGYP-PQQGYPPQGYPPQGYP-PQ 142

Query: 69  QGYPYPYQGYPPQGYPP---LQYPP 84
           QGYP P QGYPPQGYPP    QYPP
Sbjct: 143 QGYP-PQQGYPPQGYPPPYAPQYPP 164

[Close]

BLAST of Lsi03G005950 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.7e-09
Identity = 43/84 (51.19%), Postives = 44/84 (52.38%), Query Frame = 1


Query: 9  PPVGVPPPQGYPPGAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQGYPYPY 68
          PPVGVPPPQGYPP  YP  + PP    P QG PQ                YP QGYP   
Sbjct: 7  PPVGVPPPQGYPPEGYPKDAYPP-QGYPPQGYPQQG--------------YPPQGYPQ-- 66

Query: 69 QGYPPQGYPP---LQYPPTNSHNQ 90
          QGYP QGYPP    QYPP   H Q
Sbjct: 67 QGYPQQGYPPPYAPQYPPPPQHQQ 73

[Close]

BLAST of Lsi03G005950 vs. TAIR10
Match: AT3G49845.1 (AT3G49845.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-07
Identity = 40/87 (45.98%), Postives = 45/87 (51.72%), Query Frame = 1


Query: 1  MSFHEQQ-----PPPVGVPPPQGYPPGAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYS 60
          MS+ + Q     PPP G PP +GYPP  YPPP+          G P P   YP   Y  +
Sbjct: 1  MSYQDPQHPVSAPPPQGYPPKEGYPPAGYPPPA----------GYPPPQ--YPQAGYPPA 60

Query: 61 YSPYPSQGYPYPYQGYPPQGYPPLQYP 83
            P P QGY    QGYP QGYPP QYP
Sbjct: 61 GYPPPQQGYG---QGYPAQGYPPPQYP 72

[Close]

BLAST of Lsi03G005950 vs. NCBI nr
Match: gi|992280993|gb|KXG39067.1| (hypothetical protein SORBI_001G3253002, partial [Sorghum bicolor])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 49/90 (54.44%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1  MSFHEQQPPPVGVPPPQGYP-PGAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPY 60
          MS++ QQ PPVGVPPPQGYP   AYPPP  PP       G P P   YP Q Y       
Sbjct: 1  MSYYGQQQPPVGVPPPQGYPGKDAYPPPGYPPA------GYPPPAQGYPPQGYP------ 60

Query: 61 PSQGYPYPYQGYPPQGYPP--LQYPPTNSH 88
          P QGYP P QGYP QGYPP   Q PP   H
Sbjct: 61 PQQGYP-PQQGYPQQGYPPPYAQPPPPQQH 77

[Close]

BLAST of Lsi03G005950 vs. NCBI nr
Match: gi|242035343|ref|XP_002465066.1| (hypothetical protein SORBIDRAFT_01g031530 [Sorghum bicolor])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 49/90 (54.44%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1  MSFHEQQPPPVGVPPPQGYP-PGAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPY 60
          MS++ QQ PPVGVPPPQGYP   AYPPP  PP       G P P   YP Q Y       
Sbjct: 1  MSYYGQQQPPVGVPPPQGYPGKDAYPPPGYPPA------GYPPPAQGYPPQGYP------ 60

Query: 61 PSQGYPYPYQGYPPQGYPP--LQYPPTNSH 88
          P QGYP P QGYP QGYPP   Q PP   H
Sbjct: 61 PQQGYP-PQQGYPQQGYPPPYAQPPPPQQH 77

[Close]

BLAST of Lsi03G005950 vs. NCBI nr
Match: gi|674909220|emb|CDY23850.1| (BnaC04g01870D [Brassica napus])

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-08
Identity = 49/83 (59.04%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 9  PPVGVPPPQGYPP-----GAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQG 68
          PPVGVPPPQGYPP      AYPP   PP    P QG P P   YP Q Y     P P QG
Sbjct: 4  PPVGVPPPQGYPPEGYSKDAYPPQGYPPQQGYPPQGYP-PQQGYPPQGYPPQGYP-PQQG 63

Query: 69 YPYPYQGYPPQGYPP---LQYPP 84
          YP P QGYPPQGYPP    QYPP
Sbjct: 64 YP-PQQGYPPQGYPPPYAPQYPP 83

[Close]

BLAST of Lsi03G005950 vs. NCBI nr
Match: gi|828329882|ref|XP_012574344.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cicer arietinum])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 46/93 (49.46%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 1   MSFHEQQPPPVGVPPPQGYPP-----GAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYS 60
           MS++ QQ PPVGVPPPQGYPP       YPPP  PP    P QG P P   YP Q + Y 
Sbjct: 50  MSYYNQQQPPVGVPPPQGYPPEGYGKEGYPPPGYPPQQGYPPQGYPPP--GYPPQ-HGYP 109

Query: 61  YSPYPSQGYPYPYQGYPPQGYPPLQYPPTNSHN 89
             PYP+QGYP PY        P    PP + HN
Sbjct: 110 PPPYPAQGYPPPYA-------PQYAQPPPHQHN 132

[Close]

BLAST of Lsi03G005950 vs. NCBI nr
Match: gi|685304062|ref|XP_009142742.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Brassica rapa])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 49/83 (59.04%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 9  PPVGVPPPQGYPP-----GAYPPPSCPPLHDNPAQGNPQPNLAYPLQEYSYSYSPYPSQG 68
          PPVGVPPPQGYPP      AYPP   PP    P QG P P   YP Q Y     P P QG
Sbjct: 4  PPVGVPPPQGYPPEGYSKDAYPPQGYPP-QGYPPQGYP-PQQGYPPQGYPPQGYP-PQQG 63

Query: 69 YPYPYQGYPPQGYPP---LQYPP 84
          YP P QGYPPQGYPP    QYPP
Sbjct: 64 YP-PQQGYPPQGYPPPYAPQYPP 82

The following BLAST results are available for this feature:

BLAST of Lsi03G005950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYT1A_ARATH	1.5e-07	51.19	Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali...	[more]

BLAST of Lsi03G005950 vs. TrEMBL


Match Name	E-value	Identity	Description
C5WVH5_SORBI	1.3e-08	54.44	Putative uncharacterized protein Sb01g031530 OS=Sorghum bicolor GN=Sb01g031530 P...	[more]
A0A078GBL6_BRANA	2.2e-08	59.04	BnaC04g01870D protein OS=Brassica napus GN=BnaC04g01870D PE=4 SV=1	[more]
A0A078CT52_BRANA	4.1e-07	59.04	BnaA05g02190D protein OS=Brassica napus GN=BnaA05g02190D PE=4 SV=1	[more]
M4CK87_BRARP	4.1e-07	59.04	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A0D3BP41_BRAOL	6.9e-07	57.65	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Lsi03G005950 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41420.1	8.7e-09	51.19	proline-rich family protein	[more]
AT3G49845.1	2.1e-07	45.98	unknown protein	[more]

BLAST of Lsi03G005950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|992280993\|gb\|KXG39067.1\|	1.8e-08	54.44	hypothetical protein SORBI_001G3253002, partial [Sorghum bicolor]	[more]
gi\|242035343\|ref\|XP_002465066.1\|	1.8e-08	54.44	hypothetical protein SORBIDRAFT_01g031530 [Sorghum bicolor]	[more]
gi\|674909220\|emb\|CDY23850.1\|	3.1e-08	59.04	BnaC04g01870D [Brassica napus]	[more]
gi\|828329882\|ref\|XP_012574344.1\|	4.0e-08	49.46	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cic...	[more]
gi\|685304062\|ref\|XP_009142742.1\|	5.8e-07	59.04	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Bra...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G005950.1	Lsi03G005950.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G005950	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G005950	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G005950	Silver-seed gourd	carlsiB342
Lsi03G005950	Silver-seed gourd	carlsiB411
Lsi03G005950	Silver-seed gourd	carlsiB672
Lsi03G005950	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G005950	Watermelon (97103) v2	lsiwmbB226
Lsi03G005950	Wax gourd	lsiwgoB307
Lsi03G005950	Wax gourd	lsiwgoB320
Lsi03G005950	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G005950	Cucumber (Gy14) v1	cgylsiB367
Lsi03G005950	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G005950	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G005950	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G005950	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G005950	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G005950	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G005950	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G005950	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G005950	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G005950	Cucumber (Chinese Long) v2	culsiB522
Lsi03G005950	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G005950	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G005950	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G005950	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G005950	Watermelon (97103) v1	lsiwmB245
Lsi03G005950	Watermelon (97103) v1	lsiwmB268
Lsi03G005950	Cucumber (Gy14) v2	cgyblsiB488