Lsi03G005940 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G005940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 7366587 .. 7372506 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTAATTTTCTTTGATGTTGTTATCAATCTTACAAAAAAATCCATTTTATTTTTCAAAACCTTAAAAGTTAAATAGAAATTGAATTGATTTATCAAACAACATTTATAAAACTAACTCGTCCTAAGAGGTAAATTCAGGGAGAAAATATCTTTTTAGCCTCTAAGTTCATAAATATAGTTTCATTTGATGCTTAGATTTTGGAATGTTACATCTTTATCTTTAAGTTTTGAGTTTAGTTTCCATCTAATTCATAAGTTTTAAAATATTATATTTTTTCCTTAAATTTTGAGTTTAGTTTCTAGTTGATCCCTAAATTTCTAGATTTTACATTTTCCCATTAATTAACTAGTGCTCGCTCTTGATTTTGGTGTAGACTTTCAATTAGCTAAATAAAATAATTATGATGTAGATAATTTTTTAATTAATTTTAATAATGATTAAGAATTAATGAAAACTAATTTGATTTTTTTTTTAACTAATTTATATAAAATTAACACTAAGGACTAAAAGTACTTATTAGTGGGCACTCAACAGTAAAAGTATAAAACTTTAAGGTCTATGAATCAAATGGAAACTAAATTCAAAACTCAAGAATAAAAATGTGTCATTTTAAAATCCAAAGACTAAATAGAAAAATTAAACTCAAAACTAACAGATAAAAATATAACATTTTGAAACAAACACACAAATGAAAACTATATACACATCACCAAACGTATATTATATTTTTCTCTAAAGTTATATTGAAGTGAGATGGGCAATACATTAATGTGTGAATGAGGTTTCTTCAAGGATACGTAATGACCTAATTGCCTCACATATGATATCTCCTAAGCCTACTTCCCTTTTAAATTAACACAAATGTTCCTAAAAAAAATAATAAGAAAACTAACACAAATGTGTAAAAATAATAGAAAAATGTTAGGTTAGTACCTGTCACATTCTTTCAAACAATATTCCATCGTATGCTACCAAATTTTCCAAGGTTTTGCTTTCTAGACCAACATTATTCTCTCTTTAATTAAAACTTTAAAGACATATTAATTGCAACTTGCAAGTCAATGAGCCTGTCATTTTCTTTATGGCTTTTTAATATAACGTAAATTATGGTTTAATTAGTATTTTTCTTTTTTAGATTTTTCTTTCTTATATTTTTTTTATTATTTATTAAATGTAAAATCATTCTAATTATTCAATAGGAGCAGTTGCAAATATAACAATCAGGCCTAAAGTATTTGCAGATATAGCACAATGCAAAAGAATTTGCAGATATAGCAAAATTTAAATTCTGCTTTCGAAGTCTACCAATGATAGATCATATCACTAGTAGAGGTTGTTGAATGAGAAATTTCAGCTAATCACAAGTTGTCATGTCATCACAATGAAAGTCTAAGCCCATTGTGGAATTTATAAATTGGATTTGGTCGAGTAATTAATTAAAGTCACTTGGGTTCAGAATCCAATACAATTCAAGAAAATTTTGGGCCAAAGAAGATATTGGGCCCAAGCCCAAGCCCATGTGGAACCTTTATAAATAGAGTCCATATTGTACCCCCTCCATTTTGGGGGTTGGAAGCATTGACAACCAAGTGCTGAAGGTTTGAAGACATTAAAATTGAAGTTCTAAAGATTTCAAGATTGTGAAGCCTTGATCGATCTCAAGTTTACAACATTTGTCAAATTAGGCTAGCAATTTTTGTATTTATTTTGTAATTCTCAAAAATACAAAATAAATACAAAAATTGAAACATTTGTCAAATTTAACTTGGTTTAGTTGTTACTTGACAAAAATCACACATAACTCATTTAAATTGAAGAAACTACAAATTTAACTTTCATACATGTTAAATTTGCACATGAAACGTCATTTTAATTTGATGTTTCAATCCAATTTGAAAGTTTCTAACTCATTAATTTAATCTACACATTTAAATCCAATTTTTATGTTTCAAATATTCATCAAAATTTCACTTTCTTTCACTATAAATATCCGACATTTTTGTCTTCTTGGTTCTTTTTACATTTTGAAAATTTCAATCATACCTATAATCAAACATGGCTATGTGGGTTTTATTCATATATATATATATATATATATATATATATATCAATTAATATTGATTAGCTCTCTATAACTTAACAATAGGCAATTGAGAAGGTTATCAATTAATTGATGCACTCCTTACTAACCATTAAAGCTAATTGAAAAGGTTTATTATTATTAGTATTATTATATTATTTCTATAATTAATGGATACACTCTCTCCACATTCTAAAACCTTTAACTTATTCTTTTAATTTTTTTAAATTCTACAACAAATCGAATAATGCACTATAAATTGACATTTTCCCCCTATAAATATTTTTTTTTTTTTTGCAAAGGATCCTTCCCTATAAATAATTTTACGCAGTGATACCAAATGGCTTTGATTCAACGTATATCTCAATCTTATAATTTTTTTTAAATTTTTTTTATTGACAAAGTCATGTTAAGAAAATGTTATTGTTGTATTTAGTTATCTCATACCATCATTAACATTAAATTTGAAAAAAAAATATATATAATACCTGAACTTGCACAAGTTTCAAAAATACTCATTTTCAAAAAGAGTTTAAAAATATCTCTACCATTAGTTTTTTTATAGAAATCGTTAAAATTTTGTTTAAAAGATACCTTAACCTTCAAAAGTTTCAAAAATACCCTCACCATTTGTATATGAAAGTTTTAAAATACTCCTATCATTAATATGGTGATCAAATTATATAAGATATCATTTTCTTTCATATAAATACTCTCTCTTTTTTTGTGCCTATTTTTTCAATTCTTATACCAATTTTTTCAACAACCAAAATTTTAAGTTATAACATAAAATTCCACAAAATCTCAAACTCCAAAATCAAAATCTTTCAAATAAGTCCTAAAATTTCGTTGTGCTTTCATACTTTTTCTTTTTCTTATTATAGTCCAATTTCTGTTTATATAAAAAAAAAATATGGTTTTTTTTTAATTAAAAGGTTTCTTTTTTAACGGAAAATTTAGGAATATTTTTACTCACTGTTTCAAACTTTTGCCAAAATATTATATATATATTTTTCAAAAAATAATAATAAAAAAAAGTTTTCATTGGCGAGGATGGAAATCCCTTCCCATTCCCTACTGGGGATCGGATTTAGATCTCCGGTTTGACCTTGGTAACCGGTCAAACTGGGATCACCCTTCTTTATTCTAGTCTCTCTGTTTGGCAACTAAGAAAAAATCAATCCGAGATCGTTTCAAGAAATCTCATAGAGAGAAAGAGAGGGAAATATGAGTTACTACGGCCAGCCACCTCCTCCCGTCGGCTTTCCTCCGCCGCAGGGTAACATCTAAAAACCATTACTCTTTCCTCTCTTACTTCCTCCGCTACACTTTCTTGAAATTGTAAGATCAAAATCGAATGGATCTTACTTTTTCTTTCCGCAAAATTGATCTACTCTTTGTTTTCATCTCGCTTTCGCGCTTTGATTTGTTGAATTTTAACGATTTTAGGTTATCCGCCGGCAGGATATCCTCCGAAGGATGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCTGCAGGGATATCCACCTCCGCCGGCTTATGGTCCGGCGTACGGGCATCCTCCGCCTCAACGTCAAAACCAAAATAAAGAAGGATTGGTCAAACGCTTGTAATTCTCTGTTTCTCTTTCATTTTACAACTCTTATTGGATGCGATTTAAAATGAGTCAATGCCATTTAAAATGTGTTTCTCGTTTTATTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTATTTCTCGTTTTAGACTCTCTTTGCGATGGAGTGATTTTGGAAAAATTTTAACCACTAAATCAAATTATTAAGGACGGGTGACCATTTAGATTTTGATTCTTAGTTTTTGAAAATTAAGCCTACGAACACCTCACTCACCCCTAAATGTTTTGCTTTCTCATTTATATCCATGTTTACAAAAACCATGTCAAATTTTAGAAATTCAAAAAATAGTTTTTAAAAATTTATTTTTGTTTTTGAAATTTGTCTAAGAATTCAACTCTTTTAGTAAAAAAAAAAGAGAAAATCTTTTTAGTCCCCAAATTTTGAACAATATATGCATTTGATCCCGAGTTTATAAAAATAGGTTCATTTGGTCCCTATGTTTTCAAAATGTACCTGAATTTTTTAAAATAGGTTTAAGAGATCCCTCAAATAATTTTTTATTATTAATTTAAATAAATATATGACCTTCTAAATTAGAAGAATAATTTTTAAAAACCATTTCATCTCTAGAACTATTTTTCTAATTTTAAATATCATATAATTATTTTAAGAAAATGAAAGAAAAAGAATACTTGGAGGACTTTTTAGACTTATTTTTAAAAATTAAGGGATTGATAAGGTATATTTTGAAAACTCAGGGACCAAATAGACCTATTCTTATAAACTTAGGGACTAAAAAATACATTTTTAAAACTCAAGGACCAAACGCACATATTGTTCAAAATTTGAAGACTAAAAAGGTAATTTTCCCAAAAAAAAAATATATATATTAATAAATAGGCTTAATTTTTAAAATATCAAAAACAAAAAAGGGAACTACCTTATAAGTTCTAACTAACATGTGTGAATAGTAGCGTTTAGAATTAGTTTTTCTAAATATCGGCTAATTTTTCAACCATTTAAATAAATATATTATAATAATATTCTTTCATATTAATATATTTTTCATAAATTGATATAATCATTATTTTTTTAAAATTTTTATCAAATAATTTAGATTAAACAAAAGTAATTGAGATTCAAATCATATAAAATTTTTAAAGATATTTATTATAATAAATTATAAATTAATTATCAATGTGAAAATAATTAAAACAATAAGCCTATTTTGGTCCATATAATTAAATTATACCAATTCCGTATTAATTTATCTAACACCATACTTAATTTTCTTCATTTTATTGCAATTATTTTAAAAGTTACCCCAATCCCAAATTAAGCTTAGAAAATAACGCTTTGGAAGATTTGAAAGGGGTTTTATTTTTTAGTCAATTCATATTTTATTTTTGGGATATTTTTAAGTAGTCTCAGGTTTTAGAAAAATACGAATAAAAACATTGCGAAATAAAAGGTTAAATGGTAAATTTAGTCCTGCTAATTTGAAAGAAGTTGGAATTTAGTTTCTATAATTTTTAAAATTAGAATTTAGTTCTTATAGTTTGTTAAAACCTTGTAAATAGTCTATATGCTTTGATAAAAACTTCATGAAAGGTCCCTACGAACTATTTATGATAATTTTATTACATAGAGACTAAATTCTAATTCATTGAGACGAAATTTTAACTTTCTCAAATTATATGAACTAAATTTGTAATTTAACTTAAATAAATTTAAAAAATATATTTAATTTAGTAAAATGTTTATTATTTATATTATATCTAGAATCTTTTTATCTTTTTAATTTAAAGATGTATTTTAAAAAAAATACATATTCAAATATCTATTTTAGGCAATATTTTTTTATCTTTCTAATTTGCTTGTAAATTTTGCAGTTGTTATGCTGTAATTTCGTGGATGCCTTGATATGACCTTTTGGAGTGTGATCAAACCACATAAAAAGTTGAATTCCTCCACTAATGTTTAGATTTGAATTTCATCATCTCCAATATACAATGTTTCTTTTTCATCTCTACTAGGACTAATGTGTATTTGAAATAGAATTATTATTAAATAGATATATATTGTCAAGTTTTAATATAGTGATTAATATCAACGAGAATAGTGGAAGCTTATATGAATATCACATGTATAATCGATGAATTTTGTTTAGAGGATTAAATAAAAAAAATTAGGAGAAGAGAATAAG

mRNA sequence

ATGGCAGAGGGAAATATGAGTTACTACGGCCAGCCACCTCCTCCCGTCGGCTTTCCTCCGCCGCAGGGTTATCCGCCGGCAGGATATCCTCCGAAGGATGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCTGCAGGGATATCCACCTCCGCCGGCTTATGGTCCGGCGTACGGGCATCCTCCGCCTCAACGTCAAAACCAAAATAAAGAAGGATTGGTCAAACGCTTTTGTTATGCTGTAATTTCGTGGATGCCTTGATATGACCTTTTGGAGTGTGATCAAACCACATAAAAAGTTGAATTCCTCCACTAATGTTTAGATTTGAATTTCATCATCTCCAATATACAATGTTTCTTTTTCATCTCTACTAGGACTAATGTGTATTTGAAATAGAATTATTATTAAATAGATATATATTGTCAAGTTTTAATATAGTGATTAATATCAACGAGAATAGTGGAAGCTTATATGAATATCACATGTATAATCGATGAATTTTGTTTAGAGGATTAAATAAAAAAAATTAGGAGAAGAGAATAAG

Coding sequence (CDS)

ATGGCAGAGGGAAATATGAGTTACTACGGCCAGCCACCTCCTCCCGTCGGCTTTCCTCCGCCGCAGGGTTATCCGCCGGCAGGATATCCTCCGAAGGATGCTTATCCGCCGCCAGGATATCCACCGCAGGGCGGTTATCCACCTGCTGGTTATCCTCTGCAGGGATATCCACCTCCGCCGGCTTATGGTCCGGCGTACGGGCATCCTCCGCCTCAACGTCAAAACCAAAATAAAGAAGGATTGGTCAAACGCTTTTGTTATGCTGTAATTTCGTGGATGCCTTGA

Protein sequence

MAEGNMSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQRQNQNKEGLVKRFCYAVISWMP

Homology

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BLAST of Lsi03G005940 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-16
Identity = 52/85 (61.18%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG----GYPPAGYPLQGYPP--- 65
          MS Y QPP  VG PPPQGYPP GYP KDAYPP GYPPQG    GYPP GYP QGYP    
Sbjct: 1  MSQYNQPP--VGVPPPQGYPPEGYP-KDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGY 60

Query: 66 PPAYGPAYGHPPPQRQNQNKEGLVK 84
          PP Y P Y  PP  +Q Q+  G ++
Sbjct: 61 PPPYAPQYPPPPQHQQQQSSPGFLE 82

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BLAST of Lsi03G005940 vs. Swiss-Prot
Match: OPSD_ENTDO (Rhodopsin OS=Enteroctopus dofleini GN=RHO PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-09
Identity = 44/70 (62.86%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 11  QPPPPVGFPPPQGYPPAGYPPKDAYPPP-GYPPQGGYPPAGYPLQGYPP---PPAYGPAY 70
           QPPPP     PQGYPP GYPP+ AYPPP GYPPQ GYPP GYP QGYPP   PP      
Sbjct: 388 QPPPP-----PQGYPPQGYPPQGAYPPPQGYPPQ-GYPPQGYPPQGYPPQGAPPQVEAPQ 447

Query: 71  GHPPPQRQNQ 77
           G PP    NQ
Sbjct: 448 GAPPQGVDNQ 451

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BLAST of Lsi03G005940 vs. Swiss-Prot
Match: CYT1B_ARATH (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana GN=At3g57160 PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-09
Identity = 50/96 (52.08%), Postives = 54/96 (56.25%), Query Frame = 1


Query: 11 QPPPPVGFPPPQGYPPAGYPPKDAYPPPG--YPPQGGYPPAGYPLQGYPP---PPAYGPA 70
          Q PP VG PP   YP  G PPKDAYPPPG  YP QG  PP GYP QGYPP   PP   P 
Sbjct: 3  QQPPAVGVPPSHAYPAEG-PPKDAYPPPGQPYPQQGYPPPQGYPQQGYPPQGYPPQGYPE 62

Query: 71 YGHP----PPQRQNQNK------EGLVKRF-CYAVI 91
           G+P    PPQ+Q Q K      EG +    CY V+
Sbjct: 63 QGYPQQGYPPQQQQQQKHSPGMLEGCIAALCCYCVL 97

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BLAST of Lsi03G005940 vs. Swiss-Prot
Match: OPSD_LOLFO (Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 38/53 (71.70%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 20  PPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQ 73
           PPQGYPP GYPP    PP GYPPQG YPP GYP QGYPPPP   P  G PPPQ
Sbjct: 391 PPQGYPPQGYPPP---PPQGYPPQG-YPPQGYPPQGYPPPPQGPPPQG-PPPQ 438

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BLAST of Lsi03G005940 vs. Swiss-Prot
Match: OPSD_ALLSU (Rhodopsin (Fragment) OS=Alloteuthis subulata GN=RHO PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-08
Identity = 38/53 (71.70%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 20  PPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAYGHPPPQ 73
           PPQGYPP GYPP    PP GYPPQG YPP GYP QGYPPPP   P  G PPPQ
Sbjct: 384 PPQGYPPQGYPPP---PPQGYPPQG-YPPQGYPPQGYPPPPQGPPPQG-PPPQ 431

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BLAST of Lsi03G005940 vs. TrEMBL
Match: A0A0A0K2W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070830 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.5e-28
Identity = 67/85 (78.82%), Postives = 68/85 (80.00%), Query Frame = 1


Query: 7  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAY 66
          SYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGYPPPP YGPAY
Sbjct: 3  SYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPPPPYGPAY 62

Query: 67 G-HPPPQRQNQNKEGLVKRFCYAVI 91
          G HPPPQ QNQ KE      C A +
Sbjct: 63 GHHPPPQHQNQKKEVGFVEGCLAAL 87

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BLAST of Lsi03G005940 vs. TrEMBL
Match: U5G3V1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09010g PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.8e-20
Identity = 56/81 (69.14%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG---GYPPAGYPLQGYPPPPAY 65
          MSYY Q  PPVG PPPQGYPP GYP KDAYPPPGYPPQG   GYPP GYP QGYPPPP Y
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYP-KDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPY 60

Query: 66 GPAYGHPPPQRQNQNKEGLVK 84
           P YG PP Q+Q  +  G ++
Sbjct: 61 APQYGQPPRQQQGSSGPGCME 80

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BLAST of Lsi03G005940 vs. TrEMBL
Match: A0A067LB92_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16346 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG---GYPPAGYPLQGY-PPPPA 65
          MSYY Q  PPVG PPPQGYPP GY PKDAYPPPGYPPQG   GYPP GYP QGY PPPPA
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGY-PKDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPA 60

Query: 66 YGPAYGHPPPQRQN 76
          Y P YG PPPQ+Q+
Sbjct: 61 YAPQYGQPPPQQQS 73

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BLAST of Lsi03G005940 vs. TrEMBL
Match: M0TKV1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-18
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPA 65
          MSYY Q  PPVG PPPQGYPP GY PKDAYPPPGYPPQ GYPPAGYP QGY PPP Y P 
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGY-PKDAYPPPGYPPQ-GYPPAGYPQQGY-PPPGYPPP 60

Query: 66 YGHPPPQRQNQNK---EGLVKRFC 87
          Y  PPP +Q+      EG +   C
Sbjct: 61 YAQPPPPQQSSGPSFLEGCLAALC 81

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BLAST of Lsi03G005940 vs. TrEMBL
Match: A0A022RH20_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021603mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-17
Identity = 55/87 (63.22%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPA 65
          MSYY Q  PPVG PPPQGYPP GYP KDAYPP GYPPQG YPP GYP QGYPP   Y P 
Sbjct: 1  MSYYNQNQPPVGVPPPQGYPPEGYP-KDAYPPAGYPPQG-YPPQGYPPQGYPPQQGYPPQ 60

Query: 66 YGHPPPQRQNQNK------EGLVKRFC 87
          YG PPP +Q Q        EG +   C
Sbjct: 61 YGQPPPPQQQQQSGSSGCMEGCLAALC 85

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BLAST of Lsi03G005940 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-17
Identity = 52/85 (61.18%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG----GYPPAGYPLQGYPP--- 65
          MS Y QPP  VG PPPQGYPP GYP KDAYPP GYPPQG    GYPP GYP QGYP    
Sbjct: 1  MSQYNQPP--VGVPPPQGYPPEGYP-KDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGY 60

Query: 66 PPAYGPAYGHPPPQRQNQNKEGLVK 84
          PP Y P Y  PP  +Q Q+  G ++
Sbjct: 61 PPPYAPQYPPPPQHQQQQSSPGFLE 82

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BLAST of Lsi03G005940 vs. TAIR10
Match: AT3G49845.1 (AT3G49845.1 unknown protein)

HSP 1 Score: 66.6 bits (161), Expect = 9.2e-12
Identity = 41/63 (65.08%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 13 PPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYG---PAYGHP 72
          PPP G+PP +GYPPAGYPP   YPPP Y PQ GYPPAGYP    PP   YG   PA G+P
Sbjct: 13 PPPQGYPPKEGYPPAGYPPPAGYPPPQY-PQAGYPPAGYP----PPQQGYGQGYPAQGYP 70

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BLAST of Lsi03G005940 vs. TAIR10
Match: AT5G17650.1 (AT5G17650.1 glycine/proline-rich protein)

HSP 1 Score: 60.1 bits (144), Expect = 8.6e-10
Identity = 38/78 (48.72%), Postives = 43/78 (55.13%), Query Frame = 1


Query: 4   GNMSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYG 63
           G  S Y  PPP    PPP GYPP  YPP   YPP GYPP  GYPPAGYP  GY       
Sbjct: 38  GYGSSYPYPPP----PPPHGYPPVAYPPHGGYPPAGYPP-AGYPPAGYPAHGY------- 97

Query: 64  PAYGHPPPQRQNQNKEGL 82
           P++G+P P     +  G+
Sbjct: 98  PSHGYPRPSHSGHHHGGI 103

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BLAST of Lsi03G005940 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-09
Identity = 43/83 (51.81%), Postives = 45/83 (54.22%), Query Frame = 1


Query: 9  YGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPP----AGYPLQGYPPPPAYGP 68
          Y Q   PVG PPPQ     GYPPKD YPP GYPP  GYPP     GYP QGYPP     P
Sbjct: 2  YHQEQHPVGAPPPQ-----GYPPKDGYPPAGYPP-AGYPPPGYAQGYPAQGYPP-----P 61

Query: 69 AYGHPPPQRQNQNK-EGLVKRFC 87
           Y   P Q+QN    EG +   C
Sbjct: 62 QYSQAPQQKQNAGMLEGCLAALC 73

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BLAST of Lsi03G005940 vs. TAIR10
Match: AT5G45350.1 (AT5G45350.1 proline-rich family protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 36/65 (55.38%), Postives = 38/65 (58.46%), Query Frame = 1


Query: 14 PPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQ--GYPPPPAYG-----PAY 72
          PP G+PPP  YPPAGYP +   PPPG  P  GYPP  YP    GYPP P YG     P Y
Sbjct: 17 PPAGYPPPGAYPPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGYPPAPGY 76

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BLAST of Lsi03G005940 vs. NCBI nr
Match: gi|778724815|ref|XP_011658867.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-28
Identity = 67/85 (78.82%), Postives = 68/85 (80.00%), Query Frame = 1


Query: 7  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAY 66
          SYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGYPPPP YGPAY
Sbjct: 3  SYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPPPPYGPAY 62

Query: 67 G-HPPPQRQNQNKEGLVKRFCYAVI 91
          G HPPPQ QNQ KE      C A +
Sbjct: 63 GHHPPPQHQNQKKEVGFVEGCLAAL 87

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BLAST of Lsi03G005940 vs. NCBI nr
Match: gi|659110097|ref|XP_008455047.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-25
Identity = 62/74 (83.78%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 7  SYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQGGYPPAGYPLQGYPPPPAYGPAY 66
          SYY QPPPPVG PPPQGYPP GYPPKDAYPP GYPPQGGYPPAGYP QGYPP P YGPAY
Sbjct: 3  SYYAQPPPPVGVPPPQGYPPQGYPPKDAYPPQGYPPQGGYPPAGYPPQGYPPQPPYGPAY 62

Query: 67 -GHPPPQRQNQNKE 80
           GHPPPQ QN  K+
Sbjct: 63 GGHPPPQYQNNQKK 76

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BLAST of Lsi03G005940 vs. NCBI nr
Match: gi|802550735|ref|XP_012093141.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas])

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-20
Identity = 60/88 (68.18%), Postives = 63/88 (71.59%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG---GYPPAGYPLQGY-PPPPA 65
          MSYY Q  PPVG PPPQGYPP GY PKDAYPPPGYPPQG   GYPP GYP QGY PPPPA
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGY-PKDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPA 60

Query: 66 YGPAYGHPPPQRQNQNK---EGLVKRFC 87
          Y P YG PPPQ+Q+      EG +   C
Sbjct: 61 YAPQYGQPPPQQQSSGPGCLEGCLAALC 87

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BLAST of Lsi03G005940 vs. NCBI nr
Match: gi|566187084|ref|XP_006379164.1| (hypothetical protein POPTR_0009s09010g [Populus trichocarpa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 56/81 (69.14%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG---GYPPAGYPLQGYPPPPAY 65
          MSYY Q  PPVG PPPQGYPP GYP KDAYPPPGYPPQG   GYPP GYP QGYPPPP Y
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYP-KDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPY 60

Query: 66 GPAYGHPPPQRQNQNKEGLVK 84
           P YG PP Q+Q  +  G ++
Sbjct: 61 APQYGQPPRQQQGSSGPGCME 80

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BLAST of Lsi03G005940 vs. NCBI nr
Match: gi|643738592|gb|KDP44513.1| (hypothetical protein JCGZ_16346 [Jatropha curcas])

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 6  MSYYGQPPPPVGFPPPQGYPPAGYPPKDAYPPPGYPPQG---GYPPAGYPLQGY-PPPPA 65
          MSYY Q  PPVG PPPQGYPP GY PKDAYPPPGYPPQG   GYPP GYP QGY PPPPA
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGY-PKDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPA 60

Query: 66 YGPAYGHPPPQRQN 76
          Y P YG PPPQ+Q+
Sbjct: 61 YAPQYGQPPPQQQS 73

The following BLAST results are available for this feature:

BLAST of Lsi03G005940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYT1A_ARATH	4.4e-16	61.18	Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali...	[more]
OPSD_ENTDO	1.4e-09	62.86	Rhodopsin OS=Enteroctopus dofleini GN=RHO PE=1 SV=1	[more]
CYT1B_ARATH	1.4e-09	52.08	Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thali...	[more]
OPSD_LOLFO	2.0e-08	71.70	Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1	[more]
OPSD_ALLSU	2.0e-08	71.70	Rhodopsin (Fragment) OS=Alloteuthis subulata GN=RHO PE=1 SV=1	[more]

BLAST of Lsi03G005940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2W8_CUCSA	3.5e-28	78.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G070830 PE=4 SV=1	[more]
U5G3V1_POPTR	7.8e-20	69.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09010g PE=4 SV=1	[more]
A0A067LB92_JATCU	2.3e-19	77.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16346 PE=4 SV=1	[more]
M0TKV1_MUSAM	7.3e-18	66.67	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A022RH20_ERYGU	4.8e-17	63.22	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a021603mg PE=4 SV=1	[more]

BLAST of Lsi03G005940 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41420.1	2.5e-17	61.18	proline-rich family protein	[more]
AT3G49845.1	9.2e-12	65.08	unknown protein	[more]
AT5G17650.1	8.6e-10	48.72	glycine/proline-rich protein	[more]
AT5G67600.1	4.3e-09	51.81	unknown protein	[more]
AT5G45350.1	2.8e-08	55.38	proline-rich family protein	[more]

BLAST of Lsi03G005940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724815\|ref\|XP_011658867.1\|	5.0e-28	78.82	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
gi\|659110097\|ref\|XP_008455047.1\|	3.1e-25	83.78	PREDICTED: CYSTM1 family protein A-like [Cucumis melo]	[more]
gi\|802550735\|ref\|XP_012093141.1\|	6.6e-20	68.18	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jat...	[more]
gi\|566187084\|ref\|XP_006379164.1\|	1.1e-19	69.14	hypothetical protein POPTR_0009s09010g [Populus trichocarpa]	[more]
gi\|643738592\|gb\|KDP44513.1\|	3.3e-19	77.03	hypothetical protein JCGZ_16346 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G005940.1	Lsi03G005940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00239	RHODOPSNTAIL	coord: 20..31 score: 2.3E-5coord: 45..57 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G005940	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G005940	Watermelon (97103) v2	lsiwmbB226
Lsi03G005940	Wax gourd	lsiwgoB307
Lsi03G005940	Wax gourd	lsiwgoB320
Lsi03G005940	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G005940	Cucumber (Gy14) v1	cgylsiB367
Lsi03G005940	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G005940	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G005940	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G005940	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G005940	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G005940	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G005940	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G005940	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G005940	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G005940	Cucumber (Chinese Long) v2	culsiB522
Lsi03G005940	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G005940	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G005940	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G005940	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G005940	Watermelon (97103) v1	lsiwmB245
Lsi03G005940	Watermelon (97103) v1	lsiwmB268
Lsi03G005940	Cucumber (Gy14) v2	cgyblsiB488
Lsi03G005940	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G005940	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G005940	Silver-seed gourd	carlsiB342
Lsi03G005940	Silver-seed gourd	carlsiB411
Lsi03G005940	Silver-seed gourd	carlsiB672