Lsi03G005890 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAACCATTTGGAGTTGGTTCTTCATCTTCTGACCTGCGATTCACGAACGGCCACAACCACCGTCCTCCTCCTTCGTTCGGCTCTTCACGAACGGCCACCACTCCCTCCACCGTCCTCCTTCTTCGTTCGGCGAACGGCCACCACTCCCTTCAGCTTCTCCGCTGCCGCCACCGTTCACGGTTTGACTTTTTCTTTTCCTCTTTTTAAATTTCTACTAAACTTATTAGTTTCAACTTCTATTTTCAAGCTAAAGTTAATTTTAGGTTAGATTTAGAAATATGTTCAACTAAATTAGCATTCTAACAATTAGCACAGAGATTTTTGTACTTCCAAAATGATTAGATAATATGTATTTTCAGTATTTCTATTGTATTTTGTACCATTGTCAATGAACTTGACATTTTATGACTTTCAGTGGATTGCATTTCTATCCTAGTTTTTTAGAAATTAATGTATCACTGTTATCATATCTGTGTCCCGTATCTGGATGAGCGCTTCTTAGTTTTCAAATCAAGAAAACAGTTTTTAAAATAAATATTTTCACTTTTTCTTAGGATATTCATTCTTCCAAATGATCGTTGTAGAAGAATTTAGGTCACAAGCCACAAATATGAATATCTCACTCTGTAGCTTTCTATGGATCACGGGATGCACCATAAGAGATGAGCCTGCATAGATACTTAGCCACCATGGTTAAGGGAGAAACAAAAGCAACCATCTTGAAGGCCTCTGGAGACCATGATTTTTAGTTTTTCCATTAATGATAAGGGCAAAATTTTCACTAGATACACTGGTTTGGATTTATTTCCTCCATTTCTCCATTTCTCACCAAAACCTCTTACATTTAGATTAGAATCAGGGAAGTCCCTCTTGACTTTATCAAGAGCCTTCTTGAGGTTAAGTTTAATTATTCCCTCCATTTTCTTCAATTTCTACTCATCAATAGATTTGTTAGCAATGAGGAAGGTATCTAATATTTGTCCACCATTAGCAAGGTTGATTGAAACTCCATAATAATTGAGGCAGTGGGTTTAGACATTAGACCAAATCCATGGCCAAGCAAGGAAAATCTATCCTTATAGAGAGAACTCTCTCAAAAGAACCAAAGTTCTATATTCGAATATATTAAAAAACTTTCTATTACAAACCTAAAGTGGCTATTTATAGACTTACAAGAAAATAAGAAAATTAACTAATTAATTATAAAATACTAATTAAACATTAATTAATCTAAATTGTGTTGTAGGGTCAGGCGGGTTGTCCCGTGAGATTAGTCGAGGTGCTAAGCTGGCCCCGACACTCACAAATATCAAAAAAAAAAAATCTAAATTGACAACTAAACTAAATATTAACTTAAACATACTAATTATCCTATAATTCTCCTCATCATTTACCCCGACTTAAAAAAAGGAATGTGTCTCGAGTTCGAGGTGATAAAGTGAACCTTCCTTCTTTCGACTCTTTAAGTGTGGTAGACTCCGACTGAAAAATCTCGGCGCAAAATTTCTCAAATATGTAGGAATTAAATGAATACATTTAAATTTCTTCAACTTGAAATGGAATTTAGAGGCAAGATCTTTAAAATTAACTTGAAAGCTTTGCCTTGTGTGGCCCATTAGGCCCAATGTGGTAAAGGTTCCAATTAGGTTCTTATGGTAGAATTATCTTCAATGTTCAAGAGGACAGGTTTGAGTTCTTTTAAATGCACTCTAGCAGTCTAGCAACAATCTTACTTGCTTGCATACAGAATAAGACTTATAAGTGATAGTTTTGTGGTCATTTCCCAATTTGGCATCTGCTTTCTTGGGAATTATGCGAATTTGAATCTCACTGAGGCTAGCATAAAAGATCTATTTTCAAAAAAGTCGTGGGTCTCAGTCATTTGAGTCATAAGGTAATGTTCCATGATGTTCCATGAGTTTGAGTTTTTTAAAAGCTTCAACTGTGCAGAAAACTTATTTTCCCTTTAAGTGGTGACTGTTTGCTGTATTTTCTGCTCATTGTAGAGCCTTTTTTTTGGGGGTGTGTGTGAGATCCACTGCATATTCTTGAAAGGAACAAGAAACCCCAATTTAGCATCAAGCTGGTTATAAAACTCTATTAATTCAGTCTTCATTTCCACTGTCATGGAATCACTAAGGCCCCGTTTTGAAAAAAAAAAAATGGTTATCAAATGCAGTGTAGTATGCACTCTTGCAAGGGTGCTTAAGCATTTGAATGGAAATTTGTTTTGAAACATCCACATAGGTTTGCAAAATATATATATGGTTAGAAACAATGACTTTTGTTGAGAAAAAAAATGAAAGAATATAAGGGCATATAAAAAACCAAGCCCACAAAAGAGATAGAGGAATCCCTCTTAAGGAAGGGACTCCAACTATACAAAATAGAACTTATAGAATAGTTACAAAAAGTTTTCGAAACCAAAGCCTAAAAAGAAACATGATATCTAACAAGGGACCATACATCAAATGAGTCCCTCTCTAGCCCCCAAAACATCTTGTTATTCCCTTCCCCTGTAGGATGCAAAGAACAACACACACCTCGACCATCCATGAAAAAATGCTCCTTCTCCCGAAAAGTCGGATGGAGGAGAAACTCCCTGATCACATCACTAGTAAACCTATGATGAGCATGCGAGAAACCAAACGTCTAGAAGAAATAATCTCACATTACTCTCGCAAACTAACTATGCTAGAGAATATGATCCAAGTCTTCCTCCACTTTCTAACAAAGAATACAACAAAGTGGATCAACAAGCGAGGCACTTCCTCGCAAGACGATCCATTGTGAATTAGACAATGCAAGTTGTTAACTATGAAGGATTAAATGATGCAACCTTTTGAAAAACTTGTTGCATGTGTCACGAAGTGTTTCGTAAGATGTAAAGTAGGCCTATTATTAGAATATGGTGATTTGAGCATGTTGAACCAGATTATTTAGTATATAGTGGTTTTATATTGGAATTTGTTCATTTGATCTTGTTGAATGTTGAACAATACAAAACTATCTTTTATATGTCTGAAGTGTCTTGTGACATATTTCCAGGATAAACTACGTATACAATCATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGGATGGCTTATCTTGAACAAGTTGTGCCTGTCATGTTACTTTGCATGTTTGATGATTATAATGTTTGTTGAATCAAATCGCAGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGGTGAGTGGCAAGTAAACAAATCACATTGTCATAAACTAGAACCGAAATTTCTATTGATTGAAACTGTTTTGTTGTAAACTTATTTCACGGAGAGTTGGTTCCTTCTGGATACAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAACAACATGA TAACCATTTGGAGTTGGTTCTTCATCTTCTGACCTGCGATTCACGAACGGCCACAACCACCGTCCTCCTCCTTCGTTCGGCTCTTCACGAACGGCCACCACTCCCTCCACCGTCCTCCTTCTTCGTTCGGCGAACGGCCACCACTCCCTTCAGCTTCTCCGCTGCCGCCACCGTTCACGGATAAACTACGTATACAATCATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAACAACATGA ATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAACAACATGA MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpmA PE=3 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 9.7e-26 Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 1
BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpmA PE=3 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25 Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) GN=rpmA PE=3 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24 Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BARQU (50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) GN=rpmA PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24 Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BARBK (50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpmA PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.1e-24 Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 1
BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A0A0LIQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023860 PE=3 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 7.6e-70 Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1
BLAST of Lsi03G005890 vs. TrEMBL
Match: V4SKH7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002763mg PE=3 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 1.6e-64 Identity = 122/149 (81.88%), Postives = 135/149 (90.60%), Query Frame = 1
BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A061FDJ8_THECC (Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao GN=TCM_034043 PE=3 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 6.3e-64 Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1
BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A061FCK6_THECC (Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_034043 PE=3 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 6.3e-64 Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1
BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A0D2MA86_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G127800 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 5.3e-63 Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1
BLAST of Lsi03G005890 vs. TAIR10
Match: AT5G15220.1 (AT5G15220.1 Ribosomal protein L27 family protein) HSP 1 Score: 224.6 bits (571), Expect = 4.1e-59 Identity = 109/151 (72.19%), Postives = 128/151 (84.77%), Query Frame = 1
BLAST of Lsi03G005890 vs. TAIR10
Match: AT2G16930.2 (AT2G16930.2 Ribosomal protein L27 family protein) HSP 1 Score: 221.1 bits (562), Expect = 4.6e-58 Identity = 105/149 (70.47%), Postives = 123/149 (82.55%), Query Frame = 1
BLAST of Lsi03G005890 vs. TAIR10
Match: AT5G40950.1 (AT5G40950.1 ribosomal protein large subunit 27) HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21 Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 1
BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|449442805|ref|XP_004139171.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69 Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1
BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|567884869|ref|XP_006434993.1| (hypothetical protein CICLE_v10002763mg [Citrus clementina]) HSP 1 Score: 253.4 bits (646), Expect = 2.4e-64 Identity = 122/149 (81.88%), Postives = 135/149 (90.60%), Query Frame = 1
BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|590593351|ref|XP_007017541.1| (Ribosomal protein L27 family protein isoform 2, partial [Theobroma cacao]) HSP 1 Score: 251.5 bits (641), Expect = 9.0e-64 Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1
BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|590593347|ref|XP_007017540.1| (Ribosomal protein L27 family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 251.5 bits (641), Expect = 9.0e-64 Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1
BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|359475326|ref|XP_003631656.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Vitis vinifera]) HSP 1 Score: 250.4 bits (638), Expect = 2.0e-63 Identity = 118/146 (80.82%), Postives = 132/146 (90.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |