Lsi03G005890 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G005890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal L27
Location	chr03 : 7293006 .. 7296721 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACCATTTGGAGTTGGTTCTTCATCTTCTGACCTGCGATTCACGAACGGCCACAACCACCGTCCTCCTCCTTCGTTCGGCTCTTCACGAACGGCCACCACTCCCTCCACCGTCCTCCTTCTTCGTTCGGCGAACGGCCACCACTCCCTTCAGCTTCTCCGCTGCCGCCACCGTTCACGGTTTGACTTTTTCTTTTCCTCTTTTTAAATTTCTACTAAACTTATTAGTTTCAACTTCTATTTTCAAGCTAAAGTTAATTTTAGGTTAGATTTAGAAATATGTTCAACTAAATTAGCATTCTAACAATTAGCACAGAGATTTTTGTACTTCCAAAATGATTAGATAATATGTATTTTCAGTATTTCTATTGTATTTTGTACCATTGTCAATGAACTTGACATTTTATGACTTTCAGTGGATTGCATTTCTATCCTAGTTTTTTAGAAATTAATGTATCACTGTTATCATATCTGTGTCCCGTATCTGGATGAGCGCTTCTTAGTTTTCAAATCAAGAAAACAGTTTTTAAAATAAATATTTTCACTTTTTCTTAGGATATTCATTCTTCCAAATGATCGTTGTAGAAGAATTTAGGTCACAAGCCACAAATATGAATATCTCACTCTGTAGCTTTCTATGGATCACGGGATGCACCATAAGAGATGAGCCTGCATAGATACTTAGCCACCATGGTTAAGGGAGAAACAAAAGCAACCATCTTGAAGGCCTCTGGAGACCATGATTTTTAGTTTTTCCATTAATGATAAGGGCAAAATTTTCACTAGATACACTGGTTTGGATTTATTTCCTCCATTTCTCCATTTCTCACCAAAACCTCTTACATTTAGATTAGAATCAGGGAAGTCCCTCTTGACTTTATCAAGAGCCTTCTTGAGGTTAAGTTTAATTATTCCCTCCATTTTCTTCAATTTCTACTCATCAATAGATTTGTTAGCAATGAGGAAGGTATCTAATATTTGTCCACCATTAGCAAGGTTGATTGAAACTCCATAATAATTGAGGCAGTGGGTTTAGACATTAGACCAAATCCATGGCCAAGCAAGGAAAATCTATCCTTATAGAGAGAACTCTCTCAAAAGAACCAAAGTTCTATATTCGAATATATTAAAAAACTTTCTATTACAAACCTAAAGTGGCTATTTATAGACTTACAAGAAAATAAGAAAATTAACTAATTAATTATAAAATACTAATTAAACATTAATTAATCTAAATTGTGTTGTAGGGTCAGGCGGGTTGTCCCGTGAGATTAGTCGAGGTGCTAAGCTGGCCCCGACACTCACAAATATCAAAAAAAAAAAATCTAAATTGACAACTAAACTAAATATTAACTTAAACATACTAATTATCCTATAATTCTCCTCATCATTTACCCCGACTTAAAAAAAGGAATGTGTCTCGAGTTCGAGGTGATAAAGTGAACCTTCCTTCTTTCGACTCTTTAAGTGTGGTAGACTCCGACTGAAAAATCTCGGCGCAAAATTTCTCAAATATGTAGGAATTAAATGAATACATTTAAATTTCTTCAACTTGAAATGGAATTTAGAGGCAAGATCTTTAAAATTAACTTGAAAGCTTTGCCTTGTGTGGCCCATTAGGCCCAATGTGGTAAAGGTTCCAATTAGGTTCTTATGGTAGAATTATCTTCAATGTTCAAGAGGACAGGTTTGAGTTCTTTTAAATGCACTCTAGCAGTCTAGCAACAATCTTACTTGCTTGCATACAGAATAAGACTTATAAGTGATAGTTTTGTGGTCATTTCCCAATTTGGCATCTGCTTTCTTGGGAATTATGCGAATTTGAATCTCACTGAGGCTAGCATAAAAGATCTATTTTCAAAAAAGTCGTGGGTCTCAGTCATTTGAGTCATAAGGTAATGTTCCATGATGTTCCATGAGTTTGAGTTTTTTAAAAGCTTCAACTGTGCAGAAAACTTATTTTCCCTTTAAGTGGTGACTGTTTGCTGTATTTTCTGCTCATTGTAGAGCCTTTTTTTTGGGGGTGTGTGTGAGATCCACTGCATATTCTTGAAAGGAACAAGAAACCCCAATTTAGCATCAAGCTGGTTATAAAACTCTATTAATTCAGTCTTCATTTCCACTGTCATGGAATCACTAAGGCCCCGTTTTGAAAAAAAAAAAATGGTTATCAAATGCAGTGTAGTATGCACTCTTGCAAGGGTGCTTAAGCATTTGAATGGAAATTTGTTTTGAAACATCCACATAGGTTTGCAAAATATATATATGGTTAGAAACAATGACTTTTGTTGAGAAAAAAAATGAAAGAATATAAGGGCATATAAAAAACCAAGCCCACAAAAGAGATAGAGGAATCCCTCTTAAGGAAGGGACTCCAACTATACAAAATAGAACTTATAGAATAGTTACAAAAAGTTTTCGAAACCAAAGCCTAAAAAGAAACATGATATCTAACAAGGGACCATACATCAAATGAGTCCCTCTCTAGCCCCCAAAACATCTTGTTATTCCCTTCCCCTGTAGGATGCAAAGAACAACACACACCTCGACCATCCATGAAAAAATGCTCCTTCTCCCGAAAAGTCGGATGGAGGAGAAACTCCCTGATCACATCACTAGTAAACCTATGATGAGCATGCGAGAAACCAAACGTCTAGAAGAAATAATCTCACATTACTCTCGCAAACTAACTATGCTAGAGAATATGATCCAAGTCTTCCTCCACTTTCTAACAAAGAATACAACAAAGTGGATCAACAAGCGAGGCACTTCCTCGCAAGACGATCCATTGTGAATTAGACAATGCAAGTTGTTAACTATGAAGGATTAAATGATGCAACCTTTTGAAAAACTTGTTGCATGTGTCACGAAGTGTTTCGTAAGATGTAAAGTAGGCCTATTATTAGAATATGGTGATTTGAGCATGTTGAACCAGATTATTTAGTATATAGTGGTTTTATATTGGAATTTGTTCATTTGATCTTGTTGAATGTTGAACAATACAAAACTATCTTTTATATGTCTGAAGTGTCTTGTGACATATTTCCAGGATAAACTACGTATACAATCATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGGATGGCTTATCTTGAACAAGTTGTGCCTGTCATGTTACTTTGCATGTTTGATGATTATAATGTTTGTTGAATCAAATCGCAGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGGTGAGTGGCAAGTAAACAAATCACATTGTCATAAACTAGAACCGAAATTTCTATTGATTGAAACTGTTTTGTTGTAAACTTATTTCACGGAGAGTTGGTTCCTTCTGGATACAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAACAACATGA

mRNA sequence

TAACCATTTGGAGTTGGTTCTTCATCTTCTGACCTGCGATTCACGAACGGCCACAACCACCGTCCTCCTCCTTCGTTCGGCTCTTCACGAACGGCCACCACTCCCTCCACCGTCCTCCTTCTTCGTTCGGCGAACGGCCACCACTCCCTTCAGCTTCTCCGCTGCCGCCACCGTTCACGGATAAACTACGTATACAATCATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAACAACATGA

Coding sequence (CDS)

ATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAACAACATGA

Protein sequence

MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

Homology

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BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.7e-26
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVIP 126
           L EG V F++ K   R +V VIP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

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BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVIP 126
           L +G V F++ K + R +V VIP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

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BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVI 125
           LK+G V+F+      RK+V ++
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

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BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BARQU (50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGETVIAGNIIIRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVI 125
           L  G V F++ K + R +V V+
Sbjct: 62  LSNGVVSFQR-KANNRSYVSVV 82

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BLAST of Lsi03G005890 vs. Swiss-Prot
Match: RL27_BARBK (50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-24
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPG+ VGIGKDHTLF+
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIIRQRGTRWHPGENVGIGKDHTLFS 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVIP 126
           L  G V F + K++ R +V VIP
Sbjct: 62  LANGTVSF-RTKVNNRSYVSVIP 83

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BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A0A0LIQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.6e-70
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATT CKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYAMTSTSPELKT 147
           VHVIPKEGHVLHPVY  TSTS +LKT
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKT 146

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BLAST of Lsi03G005890 vs. TrEMBL
Match: V4SKH7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002763mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-64
Identity = 122/149 (81.88%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M N A T+CKRLNV+ELV+NV VY S +DG+A GLSL+FRRWATKKTAGSTKNGRDSKPK
Sbjct: 3   MFNFANTLCKRLNVKELVSNVSVYGSVADGSAGGLSLMFRRWATKKTAGSTKNGRDSKPK 62

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVG+GKDHTL+ALKEG VKFEKHKLSGRKW
Sbjct: 63  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKW 122

Query: 121 VHVIPKEGHVLHPVYA---MTSTSPELKT 147
           VHV PKEGHVLHP+YA     ++SP+L+T
Sbjct: 123 VHVEPKEGHVLHPLYANATANASSPQLET 151

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BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A061FDJ8_THECC (Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.3e-64
Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA T CKR++V+ELVT+ PVY S +DG++ GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 1   MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEGCVKFE  KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYAMTSTSPELKTTT 149
           VHV PKEGHVLHPVY +T+ S ELKT T
Sbjct: 121 VHVEPKEGHVLHPVY-VTAASEELKTAT 147

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BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A061FCK6_THECC (Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.3e-64
Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA T CKR++V+ELVT+ PVY S +DG++ GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 34  MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 93

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEGCVKFE  KLSGRKW
Sbjct: 94  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 153

Query: 121 VHVIPKEGHVLHPVYAMTSTSPELKTTT 149
           VHV PKEGHVLHPVY +T+ S ELKT T
Sbjct: 154 VHVEPKEGHVLHPVY-VTAASEELKTAT 180

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BLAST of Lsi03G005890 vs. TrEMBL
Match: A0A0D2MA86_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G127800 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.3e-63
Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NI TT CKR++V+ELVT+ PVY + +DG++ GLSL+ RRWA+KKTAGSTKNGRDSKPK
Sbjct: 1   MFNITTTFCKRISVKELVTSAPVYGTITDGSS-GLSLMLRRWASKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTL+ALKEGCVKFE HKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLYALKEGCVKFEMHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYAMTSTSPELKTTT 149
           VHV PKEGHVLHP+YA T+ S ELKT T
Sbjct: 121 VHVEPKEGHVLHPLYA-TADSGELKTAT 146

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BLAST of Lsi03G005890 vs. TAIR10
Match: AT5G15220.1 (AT5G15220.1 Ribosomal protein L27 family protein)

HSP 1 Score: 224.6 bits (571), Expect = 4.1e-59
Identity = 109/151 (72.19%), Postives = 128/151 (84.77%), Query Frame = 1


Query: 2   LNIATTVCKRLNVRELVTNVPVYS--SFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A ++C+R+++REL+T VP YS  S SDG++ GLSL+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVY--AMTSTSPELKTTT 149
           W+HV P  GHVLHP+Y  A  + S +LKT +
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

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BLAST of Lsi03G005890 vs. TAIR10
Match: AT2G16930.2 (AT2G16930.2 Ribosomal protein L27 family protein)

HSP 1 Score: 221.1 bits (562), Expect = 4.6e-58
Identity = 105/149 (70.47%), Postives = 123/149 (82.55%), Query Frame = 1


Query: 2   LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A ++C+R+++REL+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVYAMTSTSPELKTTT 149
           W+HV P  GHVLHP+Y   + +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

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BLAST of Lsi03G005890 vs. TAIR10
Match: AT5G40950.1 (AT5G40950.1 ribosomal protein large subunit 27)

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 1


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGCVKFEKHKLSGRKWVHVIPKE 128
           L +G VKFEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

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BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|449442805|ref|XP_004139171.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATT CKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYAMTSTSPELKT 147
           VHVIPKEGHVLHPVY  TSTS +LKT
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKT 146

[Close]

BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|567884869|ref|XP_006434993.1| (hypothetical protein CICLE_v10002763mg [Citrus clementina])

HSP 1 Score: 253.4 bits (646), Expect = 2.4e-64
Identity = 122/149 (81.88%), Postives = 135/149 (90.60%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M N A T+CKRLNV+ELV+NV VY S +DG+A GLSL+FRRWATKKTAGSTKNGRDSKPK
Sbjct: 3   MFNFANTLCKRLNVKELVSNVSVYGSVADGSAGGLSLMFRRWATKKTAGSTKNGRDSKPK 62

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVG+GKDHTL+ALKEG VKFEKHKLSGRKW
Sbjct: 63  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKW 122

Query: 121 VHVIPKEGHVLHPVYA---MTSTSPELKT 147
           VHV PKEGHVLHP+YA     ++SP+L+T
Sbjct: 123 VHVEPKEGHVLHPLYANATANASSPQLET 151

[Close]

BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|590593351|ref|XP_007017541.1| (Ribosomal protein L27 family protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-64
Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA T CKR++V+ELVT+ PVY S +DG++ GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 34  MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 93

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEGCVKFE  KLSGRKW
Sbjct: 94  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 153

Query: 121 VHVIPKEGHVLHPVYAMTSTSPELKTTT 149
           VHV PKEGHVLHPVY +T+ S ELKT T
Sbjct: 154 VHVEPKEGHVLHPVY-VTAASEELKTAT 180

[Close]

BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|590593347|ref|XP_007017540.1| (Ribosomal protein L27 family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-64
Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 1


Query: 1   MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA T CKR++V+ELVT+ PVY S +DG++ GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 1   MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEGCVKFE  KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYAMTSTSPELKTTT 149
           VHV PKEGHVLHPVY +T+ S ELKT T
Sbjct: 121 VHVEPKEGHVLHPVY-VTAASEELKTAT 147

[Close]

BLAST of Lsi03G005890 vs. NCBI nr
Match: gi|359475326|ref|XP_003631656.1| (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 250.4 bits (638), Expect = 2.0e-63
Identity = 118/146 (80.82%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 2   LNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKN 61
           +N+AT  CKR+N++ELVTN+PVY S SD +  GL L+F RWA+KKTAGSTKNGRDSKPKN
Sbjct: 1   MNLATLFCKRMNIKELVTNLPVYRSASDVSGEGLGLIFMRWASKKTAGSTKNGRDSKPKN 60

Query: 62  LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWV 121
           LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTL+ALKEGCVKFEKHKLSGRKWV
Sbjct: 61  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLYALKEGCVKFEKHKLSGRKWV 120

Query: 122 HVIPKEGHVLHPVYAMTSTSPELKTT 148
           HV PK+GHVLHPVYA  + +P LKTT
Sbjct: 121 HVEPKDGHVLHPVYA-DAAAPRLKTT 145

The following BLAST results are available for this feature:

BLAST of Lsi03G005890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL27_BART1	9.7e-26	71.08	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
RL27_BARHE	1.3e-25	69.88	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
RL27_ALTMD	1.1e-24	67.07	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
RL27_BARQU	1.8e-24	67.07	50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) GN=rpmA PE=3 ...	[more]
RL27_BARBK	4.1e-24	66.27	50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583...	[more]

BLAST of Lsi03G005890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIQ3_CUCSA	7.6e-70	90.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G023860 PE=3 SV=1	[more]
V4SKH7_9ROSI	1.6e-64	81.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002763mg PE=3 SV=1	[more]
A0A061FDJ8_THECC	6.3e-64	81.08	Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao GN=TCM_034043 ...	[more]
A0A061FCK6_THECC	6.3e-64	81.08	Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao GN=...	[more]
A0A0D2MA86_GOSRA	5.3e-63	81.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G127800 PE=3 SV=1	[more]

BLAST of Lsi03G005890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15220.1	4.1e-59	72.19	Ribosomal protein L27 family protein	[more]
AT2G16930.2	4.6e-58	70.47	Ribosomal protein L27 family protein	[more]
AT5G40950.1	5.8e-21	61.18	ribosomal protein large subunit 27	[more]

BLAST of Lsi03G005890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442805\|ref\|XP_004139171.1\|	1.1e-69	90.41	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus]	[more]
gi\|567884869\|ref\|XP_006434993.1\|	2.4e-64	81.88	hypothetical protein CICLE_v10002763mg [Citrus clementina]	[more]
gi\|590593351\|ref\|XP_007017541.1\|	9.0e-64	81.08	Ribosomal protein L27 family protein isoform 2, partial [Theobroma cacao]	[more]
gi\|590593347\|ref\|XP_007017540.1\|	9.0e-64	81.08	Ribosomal protein L27 family protein isoform 1 [Theobroma cacao]	[more]
gi\|359475326\|ref\|XP_003631656.1\|	2.0e-63	80.82	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018261	Ribosomal_L27_CS
IPR001684	Ribosomal_L27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G005890.1	Lsi03G005890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRODOM	PD003114		coord: 69..125 score: 1.0
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 95..119 score: 6.0E-36coord: 45..69 score: 6.0E-36coord: 70..94 score: 6.0
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 25
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 8..141 score: 2.7E
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..123 score: 3.9
IPR001684	Ribosomal protein L27	TIGRFAMs	TIGR00062	TIGR00062	coord: 43..123 score: 3.9
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89 scor
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 61..126 score: 2.9
None	No IPR available	PANTHER	PTHR15893:SF2	50S RIBOSOMAL PROTEIN L27	coord: 8..141 score: 2.7E
None	No IPR available	unknown	SSF110324	Ribosomal L27 protein-like	coord: 43..123 score: 3.35

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi03G005890	Lsi11G005570	Bottle gourd (USVL1VR-Ls)	lsilsiB053

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G005890	Cucumber (Chinese Long) v2	culsiB522
Lsi03G005890	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G005890	Melon (DHL92) v3.5.1	lsimeB268
Lsi03G005890	Watermelon (Charleston Gray)	lsiwcgB223
Lsi03G005890	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G005890	Watermelon (97103) v1	lsiwmB245
Lsi03G005890	Watermelon (97103) v1	lsiwmB268
Lsi03G005890	Cucumber (Gy14) v2	cgyblsiB488
Lsi03G005890	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G005890	Melon (DHL92) v3.6.1	lsimedB281
Lsi03G005890	Silver-seed gourd	carlsiB342
Lsi03G005890	Silver-seed gourd	carlsiB411
Lsi03G005890	Silver-seed gourd	carlsiB672
Lsi03G005890	Cucumber (Chinese Long) v3	cuclsiB555
Lsi03G005890	Watermelon (97103) v2	lsiwmbB226
Lsi03G005890	Wax gourd	lsiwgoB307
Lsi03G005890	Wax gourd	lsiwgoB320
Lsi03G005890	Bottle gourd (USVL1VR-Ls)	lsilsiB126
Lsi03G005890	Cucumber (Gy14) v1	cgylsiB367
Lsi03G005890	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G005890	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G005890	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G005890	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G005890	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G005890	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G005890	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G005890	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G005890	Wild cucumber (PI 183967)	cpilsiB536