Lsi03G005700 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G005700
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionFamily of unknown function (DUF566)
Locationchr03 : 6879774 .. 6882431 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGTGGATTTACAGTACCGCTTAAAATCTTGGGAATTGTCGGGAAAGAAGCTGATTTCCAACCAAATGTCATTCCAAAAAAGGTCTTCTTATAGAAACCAAATAACCGTATGAAGGATAGAAGAACTACAATTCCCAACTACCTTGAGTTACTTGCACACTCCTACTAAACAATTGTCTCCTTCATCCTTACACACCCACTCTATTTATAAATTATATAACAAATCCTCCTGACGTACTCCTCGATTGGTATGAACATACCCATAGTACCCTAATAGTATTCCTAATTTCTCCTATTGCTCTTATACGATCTTCCTACCATTTTAAACCTTAATTGTAAAAAGATTCTCAGTATGAGTATGACACTTGTGATTAATACATATCTTTGTTTCCTATAAAAAAAAAGTATGCACTTGAATTTCATAATGTTTCAACTTCCACCAAAGACTCTTTGCACATCCTATGGTTTTGTGTTTTCTAACCATGCACCATCATTCTTTCCATGAATACTGAACACTTTATGCTGCAACTGATTTGTGACTTCTGGAAATCTCCAGAACCATATGACCATTAAGGCCCGGTTATATTCTTTAGGTTACCAAAAGTCTATACTCGTACTCATAGGTTACCATGCTTATACATCACGACTAACTAACCACCTGGCCCCCACAACTCTTAATAGACTAACTCAAATGCCCGACTCACCCCATTTATGACTCATAGTACAATGCACATTAATTTCTGGGGGTCTATCAACATGGTAGCCTCTCTTTACTTTTTTTTAACTGCTCTTCAACACCCTATCTTTTACCGTCATGGATTAAATATAATAGAATAATATTGTTTAGAAGTGGCCTTATTCATTAAAGTTAAAATGGCCTTATTTATTAAAGTTAATTGAATAATGTCATACTGAAAAATTGGCCTTAATTTCATCCTTTATTTTGGTGGTAACTTTGTGCCCTTGTGAATGATCGATTTTATGTGTATCTTATTCTCCAAATTCTAACATAAGCTTTTCTAACTTATTTGGTGTGATTGTAGATAAGTTATTTGGAAGAATGGGCTCTTTTAGACAGAGATCACTCAAGCTCCATGCTTGGAGCAACTGAGGCTTTGAAGGCCAGTACTCTACGGCTCCCAGTTGTTGGGAAAGCACTTGTATGTACCCTGCACCAATTTATATTTCCATTGAAAAGCGGTTACTAATTAAGGCTCCATTGTGAAGAAAATAAATAATTTTTATTTTATCAGGCTGATATCCAGAACCTGAAAGATGCTGTGGGTTCAGCTGTTGATGTTATGCAGGCAATGGCATCTTCAATATGCTCTCTCTCATCTAAGGTGCTGCTTTGCCTTTAACTTTTACCTGTCTGAGAAAGTTTATCATTTTTCTGCATGCCGAAGGTTATGAATGAGCAACAAAACTATGTACTTCTAGATTCAATTTAGGTTTTTTCAGTTTTCCTGTACGAGAAATTTTGGGGTGCTGGTTTTAATTATCAGGTGGTGTTCTTCCTGGAACTAATGTTTATTTTTTTTAGCTCTTTTAGTTTGTGTCCATTGAGATTTCCCCCATTCAAATCCTTAAATTGAGCAAAAAAGAAACTGCCATGTCATATCCTTGTGAACTTTTTAGTGGCAAAGGACTCAGAGCAATTGCTATGAGAGGTGTTCCCTCATTGTGATAGTAGTTTAGGGGATCTAAGTTATTATTTGGGAGCATAGCCAAGGAAGATAGATAGATTGATTAGGAACTTTGTCCCCTTTTCTATAGCTTTCCCCTTAAGAGTTAAAAGATAATAGAATCCTTGACTTTTATACCTTTGACATACCTTATATCTTAGAAATGGTTATGTCAATCACAGGTAGAAGAAACAAACTCCGTGGTGGCTGAACTGGTTAAGGTGACGGCAAAGGAACGGATTTTACTTCAACAATGTGAAGATTTTTTGTCCACTTTAGCAGCCATGCAGGTAAGTTTTAGTTATCTAGTTTTGATAATCGAAAAGTGAACTGTCTGCATATTGTGTTTCGTCTTATTTTACCATTTGATCGATATGAATAGGTTAAAGATTGTAGCTTGCGAACGCACATATTGCAACTGAATCGATTTCCAACGAGACAACAGCCTAACAAATACATGTAGAACTGATATGATCCTGATGATATGACGACTCACTCCTCACCTGTTATTCTACTAACATTACACGGACCCCTTTTCGTTTTTTCAACCCGATGGAGGCAGAGACTGAAGTAACAAGAAACAGATTGGTGATTTTTAGGATCTGGGTTTTGAAACCTTCTTGGTGGCTCTTATATTTCTTCTCTATGTTGTTAAATGTATCTCTTTGTATCTGGAAAAAAGAAAAAGAAAAAGAAAAAGAGAAAGAAAGGAAGAAGATTGCAGGGAATGGCTTTCCATCCCTTTGATTAGTTATGTAAAAGTGCTGCAATTCTCTATCCCTTTAGCCCACAAGTAAATGCCAATGTTGAATGTGTATATATGTAATGTTCTCATCATTGATGATTCTTGTAGTTTGTGAATTCTTGTGACTCATTGGTGAAATAGTCTCCTTTTTCCTTTCCAATATTGCCTCAGAAATTCGTCCCCAGAAACTTTAACCACAGTAAAATTCAAACAATATCTTTAC

mRNA sequence

ATGCTTTGTGGATTTACAGTACCGCTTAAAATCTTGGGAATTGTCGGGAAAGAAGCTGATTTCCAACCAAATGTCATTCCAAAAAAGATAAGTTATTTGGAAGAATGGGCTCTTTTAGACAGAGATCACTCAAGCTCCATGCTTGGAGCAACTGAGGCTTTGAAGGCCAGTACTCTACGGCTCCCAGTTGTTGGGAAAGCACTTGCTGATATCCAGAACCTGAAAGATGCTGTGGGTTCAGCTGTTGATGTTATGCAGGCAATGGCATCTTCAATATGCTCTCTCTCATCTAAGGTAGAAGAAACAAACTCCGTGGTGGCTGAACTGGTTAAGGTGACGGCAAAGGAACGGATTTTACTTCAACAATGTGAAGATTTTTTGTCCACTTTAGCAGCCATGCAGGTTAAAGATTGTAGCTTGCGAACGCACATATTGCAACTGAATCGATTTCCAACGAGACAACAGCCTAACAAATACATGTAGAACTGATATGATCCTGATGATATGACGACTCACTCCTCACCTGTTATTCTACTAACATTACACGGACCCCTTTTCGTTTTTTCAACCCGATGGAGGCAGAGACTGAAGTAACAAGAAACAGATTGGTGATTTTTAGGATCTGGGTTTTGAAACCTTCTTGGTGGCTCTTATATTTCTTCTCTATGTTGTTAAATGTATCTCTTTGTATCTGGAAAAAAGAAAAAGAAAAAGAAAAAGAGAAAGAAAGGAAGAAGATTGCAGGGAATGGCTTTCCATCCCTTTGATTAGTTATGTAAAAGTGCTGCAATTCTCTATCCCTTTAGCCCACAAGTAAATGCCAATGTTGAATGTGTATATATGTAATGTTCTCATCATTGATGATTCTTGTAGTTTGTGAATTCTTGTGACTCATTGGTGAAATAGTCTCCTTTTTCCTTTCCAATATTGCCTCAGAAATTCGTCCCCAGAAACTTTAACCACAGTAAAATTCAAACAATATCTTTAC

Coding sequence (CDS)

ATGCTTTGTGGATTTACAGTACCGCTTAAAATCTTGGGAATTGTCGGGAAAGAAGCTGATTTCCAACCAAATGTCATTCCAAAAAAGATAAGTTATTTGGAAGAATGGGCTCTTTTAGACAGAGATCACTCAAGCTCCATGCTTGGAGCAACTGAGGCTTTGAAGGCCAGTACTCTACGGCTCCCAGTTGTTGGGAAAGCACTTGCTGATATCCAGAACCTGAAAGATGCTGTGGGTTCAGCTGTTGATGTTATGCAGGCAATGGCATCTTCAATATGCTCTCTCTCATCTAAGGTAGAAGAAACAAACTCCGTGGTGGCTGAACTGGTTAAGGTGACGGCAAAGGAACGGATTTTACTTCAACAATGTGAAGATTTTTTGTCCACTTTAGCAGCCATGCAGGTTAAAGATTGTAGCTTGCGAACGCACATATTGCAACTGAATCGATTTCCAACGAGACAACAGCCTAACAAATACATGTAG

Protein sequence

MLCGFTVPLKILGIVGKEADFQPNVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVDVMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTHILQLNRFPTRQQPNKYM
Homology
[Close]
BLAST of Lsi03G005700 vs. Swiss-Prot
Match: QWRF2_ARATH (QWRF motif-containing protein 2 OS=Arabidopsis thaliana GN=QWRF2 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-40
Identity = 84/128 (65.62%), Postives = 110/128 (85.94%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  ++ +LEEW+LLDRDHSSS+ GATE+LKASTLRLP+VGK + DIQ+LK AV SAVD
Sbjct: 523 SILRGQMGFLEEWSLLDRDHSSSLSGATESLKASTLRLPIVGKTVVDIQDLKHAVSSAVD 582

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAM+SSI SL+SKV+E NSV+ E V VTAKE++LL++C+  LS +AAMQV DCS++TH
Sbjct: 583 VMQAMSSSIFSLTSKVDEMNSVMVETVNVTAKEKVLLERCQGCLSRVAAMQVTDCSMKTH 642

Query: 144 ILQLNRFP 152
           I+QL+R P
Sbjct: 643 IIQLSRIP 650

[Close]
BLAST of Lsi03G005700 vs. Swiss-Prot
Match: SCO3_ARATH (Protein SNOWY COTYLEDON 3 OS=Arabidopsis thaliana GN=SCO3 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-40
Identity = 84/126 (66.67%), Postives = 109/126 (86.51%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++ +++ YLEEW+LLDR+HS+S+ GATEALKASTLRLPV GKA+ DIQ+LK AV SAVD
Sbjct: 518 SILKEQMCYLEEWSLLDRNHSNSLSGATEALKASTLRLPVSGKAVVDIQDLKHAVSSAVD 577

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VM AM SSI SL+SKVEE NSV+AE+V +T KE +LL+QC+ FL+ +AAMQV DCS++TH
Sbjct: 578 VMHAMVSSIFSLTSKVEEMNSVMAEMVNITGKEEVLLEQCQGFLTRVAAMQVTDCSMKTH 637

Query: 144 ILQLNR 150
           I+QL+R
Sbjct: 638 IIQLSR 643

[Close]
BLAST of Lsi03G005700 vs. Swiss-Prot
Match: AUG8_ARATH (AUGMIN subunit 8 OS=Arabidopsis thaliana GN=AUG8 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.3e-27
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1 

Query: 33  LEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVDVMQAMASSI 92
           LE+WA L+RDH SS++GA   L+A+TLRLP  G   AD ++LK A+ SA+DVMQAM SSI
Sbjct: 507 LEDWATLERDHVSSLVGAISDLEANTLRLPATGGTKADTESLKAAMSSALDVMQAMGSSI 566

Query: 93  CSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTHILQLNR 150
            SL SKVEE N +V EL  V  KE  +  +CED L++ A MQ+++CSLRTH++Q  R
Sbjct: 567 WSLLSKVEEMNIMVTELAVVVTKESSMQGKCEDLLASTAIMQIEECSLRTHLIQTRR 623

[Close]
BLAST of Lsi03G005700 vs. Swiss-Prot
Match: QWRF9_ARATH (QWRF motif-containing protein 9 OS=Arabidopsis thaliana GN=QWRF9 PE=3 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-27
Identity = 63/124 (50.81%), Postives = 93/124 (75.00%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  ++ +LEEW ++DR++  S++GA EALK STL LPV   A+ ++Q++KDA+ SAVD
Sbjct: 389 SILNMQMGHLEEWLVIDRNYMGSLVGAAEALKGSTLCLPVDCGAMVNVQSVKDAICSAVD 448

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSIC L  KV + +S+ AEL +V AK+  +L  C D L+T++A+QV +CSLRT 
Sbjct: 449 VMQAMASSICLLLPKVGKISSLAAELGRVNAKDEGMLDVCRDLLNTISALQVTECSLRTQ 508

Query: 144 ILQL 148
           + QL
Sbjct: 509 VTQL 512

[Close]
BLAST of Lsi03G005700 vs. Swiss-Prot
Match: QWRF4_ARATH (QWRF motif-containing protein 4 OS=Arabidopsis thaliana GN=QWRF4 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.3e-23
Identity = 54/123 (43.90%), Postives = 90/123 (73.17%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  ++  LE+WA+++R+H SS+ GA   L+A+TLRLP+ G   AD+ +LK A+ SA+D
Sbjct: 462 SILNDQMVCLEDWAMVEREHISSLAGAIGDLEANTLRLPLAGGTKADLGSLKLAMSSALD 521

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQ+M SSI SL S++EE N +V++L  +   E  LL +CE+ L++ A M++++ SL+TH
Sbjct: 522 VMQSMGSSIWSLHSQMEEMNKLVSDLAVIAKTENFLLDKCENLLASTAVMEIEERSLKTH 581

Query: 144 ILQ 147
           ++Q
Sbjct: 582 LIQ 584

[Close]
BLAST of Lsi03G005700 vs. TrEMBL
Match: A0A0A0K7R4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071450 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 9.8e-63
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +V+  +ISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKA+ADIQNLKDAVGSAVD
Sbjct: 531 SVLKGQISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKAIADIQNLKDAVGSAVD 590

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH
Sbjct: 591 VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 650

Query: 144 ILQLNRFPTRQQPNKYM 161
           ILQLNRFPTRQQPNKYM
Sbjct: 651 ILQLNRFPTRQQPNKYM 667

[Close]
BLAST of Lsi03G005700 vs. TrEMBL
Match: A0A061E271_THECC (Family of Uncharacterized protein function (DUF566), putative isoform 1 OS=Theobroma cacao GN=TCM_007210 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.8e-51
Identity = 109/129 (84.50%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  +I+YLEEWALLDRDHSSS+LGATEALKASTLRLP+VGKA ADIQNLKDAV SAVD
Sbjct: 548 SILKGQIAYLEEWALLDRDHSSSLLGATEALKASTLRLPIVGKATADIQNLKDAVSSAVD 607

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSICSLS KVEE NS+VAELV VTAKERILL+QC+DFLSTLAA+QVKDCSLRTH
Sbjct: 608 VMQAMASSICSLSLKVEEMNSLVAELVSVTAKERILLEQCKDFLSTLAAIQVKDCSLRTH 667

Query: 144 ILQLNRFPT 153
           I+QLNR PT
Sbjct: 668 IIQLNRVPT 676

[Close]
BLAST of Lsi03G005700 vs. TrEMBL
Match: B9SNC9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174830 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.8e-48
Identity = 101/129 (78.29%), Postives = 118/129 (91.47%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  +I+ LEEW+LLDRDHS+S+ GATEALKASTLRLP+VGK +AD+QNLKDAVGSAVD
Sbjct: 498 SILKGQITCLEEWSLLDRDHSTSLEGATEALKASTLRLPIVGKTIADVQNLKDAVGSAVD 557

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VM AMASSIC LSSK+EE NS+VAELV VTAKE+ LL+QC+DFLSTLAAMQVKDCSLRTH
Sbjct: 558 VMHAMASSICLLSSKMEEINSLVAELVNVTAKEKFLLEQCKDFLSTLAAMQVKDCSLRTH 617

Query: 144 ILQLNRFPT 153
           I+QLNR PT
Sbjct: 618 IIQLNRLPT 626

[Close]
BLAST of Lsi03G005700 vs. TrEMBL
Match: A0A0B2SC34_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020035 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-48
Identity = 102/129 (79.07%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  +ISYLEEWALLDRDHSSS+LGATEALKASTLRLPVV KA+AD+ NLKDA+GSAVD
Sbjct: 410 SILKGQISYLEEWALLDRDHSSSLLGATEALKASTLRLPVVEKAIADVPNLKDALGSAVD 469

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSI SLSSKVEETN +VAE++KVT+KER+LL+ C++FLS+LAAMQVKDCSLRTH
Sbjct: 470 VMQAMASSIYSLSSKVEETNCLVAEILKVTSKERLLLEHCKEFLSSLAAMQVKDCSLRTH 529

Query: 144 ILQLNRFPT 153
           +LQL+R PT
Sbjct: 530 MLQLSRVPT 538

[Close]
BLAST of Lsi03G005700 vs. TrEMBL
Match: I1NG16_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G132700 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-48
Identity = 102/129 (79.07%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  +ISYLEEWALLDRDHSSS+LGATEALKASTLRLPVV KA+AD+ NLKDA+GSAVD
Sbjct: 489 SILKGQISYLEEWALLDRDHSSSLLGATEALKASTLRLPVVEKAIADVPNLKDALGSAVD 548

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSI SLSSKVEETN +VAE++KVT+KER+LL+ C++FLS+LAAMQVKDCSLRTH
Sbjct: 549 VMQAMASSIYSLSSKVEETNCLVAEILKVTSKERLLLEHCKEFLSSLAAMQVKDCSLRTH 608

Query: 144 ILQLNRFPT 153
           +LQL+R PT
Sbjct: 609 MLQLSRVPT 617

[Close]
BLAST of Lsi03G005700 vs. TAIR10
Match: AT1G49890.1 (AT1G49890.1 Family of unknown function (DUF566) )

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-41
Identity = 84/128 (65.62%), Postives = 110/128 (85.94%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  ++ +LEEW+LLDRDHSSS+ GATE+LKASTLRLP+VGK + DIQ+LK AV SAVD
Sbjct: 523 SILRGQMGFLEEWSLLDRDHSSSLSGATESLKASTLRLPIVGKTVVDIQDLKHAVSSAVD 582

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAM+SSI SL+SKV+E NSV+ E V VTAKE++LL++C+  LS +AAMQV DCS++TH
Sbjct: 583 VMQAMSSSIFSLTSKVDEMNSVMVETVNVTAKEKVLLERCQGCLSRVAAMQVTDCSMKTH 642

Query: 144 ILQLNRFP 152
           I+QL+R P
Sbjct: 643 IIQLSRIP 650

[Close]
BLAST of Lsi03G005700 vs. TAIR10
Match: AT3G19570.2 (AT3G19570.2 Family of unknown function (DUF566) )

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-41
Identity = 84/126 (66.67%), Postives = 109/126 (86.51%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++ +++ YLEEW+LLDR+HS+S+ GATEALKASTLRLPV GKA+ DIQ+LK AV SAVD
Sbjct: 518 SILKEQMCYLEEWSLLDRNHSNSLSGATEALKASTLRLPVSGKAVVDIQDLKHAVSSAVD 577

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VM AM SSI SL+SKVEE NSV+AE+V +T KE +LL+QC+ FL+ +AAMQV DCS++TH
Sbjct: 578 VMHAMVSSIFSLTSKVEEMNSVMAEMVNITGKEEVLLEQCQGFLTRVAAMQVTDCSMKTH 637

Query: 144 ILQLNR 150
           I+QL+R
Sbjct: 638 IIQLSR 643

[Close]
BLAST of Lsi03G005700 vs. TAIR10
Match: AT4G30710.1 (AT4G30710.1 Family of unknown function (DUF566) )

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-28
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1 

Query: 33  LEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVDVMQAMASSI 92
           LE+WA L+RDH SS++GA   L+A+TLRLP  G   AD ++LK A+ SA+DVMQAM SSI
Sbjct: 507 LEDWATLERDHVSSLVGAISDLEANTLRLPATGGTKADTESLKAAMSSALDVMQAMGSSI 566

Query: 93  CSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTHILQLNR 150
            SL SKVEE N +V EL  V  KE  +  +CED L++ A MQ+++CSLRTH++Q  R
Sbjct: 567 WSLLSKVEEMNIMVTELAVVVTKESSMQGKCEDLLASTAIMQIEECSLRTHLIQTRR 623

[Close]
BLAST of Lsi03G005700 vs. TAIR10
Match: AT5G43160.1 (AT5G43160.1 Family of unknown function (DUF566) )

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-28
Identity = 63/124 (50.81%), Postives = 93/124 (75.00%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  ++ +LEEW ++DR++  S++GA EALK STL LPV   A+ ++Q++KDA+ SAVD
Sbjct: 137 SILNMQMGHLEEWLVIDRNYMGSLVGAAEALKGSTLCLPVDCGAMVNVQSVKDAICSAVD 196

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSIC L  KV + +S+ AEL +V AK+  +L  C D L+T++A+QV +CSLRT 
Sbjct: 197 VMQAMASSICLLLPKVGKISSLAAELGRVNAKDEGMLDVCRDLLNTISALQVTECSLRTQ 256

Query: 144 ILQL 148
           + QL
Sbjct: 257 VTQL 260

[Close]
BLAST of Lsi03G005700 vs. TAIR10
Match: AT2G24070.1 (AT2G24070.1 Family of unknown function (DUF566) )

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 54/123 (43.90%), Postives = 90/123 (73.17%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  ++  LE+WA+++R+H SS+ GA   L+A+TLRLP+ G   AD+ +LK A+ SA+D
Sbjct: 462 SILNDQMVCLEDWAMVEREHISSLAGAIGDLEANTLRLPLAGGTKADLGSLKLAMSSALD 521

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQ+M SSI SL S++EE N +V++L  +   E  LL +CE+ L++ A M++++ SL+TH
Sbjct: 522 VMQSMGSSIWSLHSQMEEMNKLVSDLAVIAKTENFLLDKCENLLASTAVMEIEERSLKTH 581

Query: 144 ILQ 147
           ++Q
Sbjct: 582 LIQ 584

[Close]
BLAST of Lsi03G005700 vs. NCBI nr
Match: gi|449438327|ref|XP_004136940.1| (PREDICTED: QWRF motif-containing protein 2-like [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +V+  +ISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKA+ADIQNLKDAVGSAVD
Sbjct: 531 SVLKGQISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKAIADIQNLKDAVGSAVD 590

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH
Sbjct: 591 VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 650

Query: 144 ILQLNRFPTRQQPNKYM 161
           ILQLNRFPTRQQPNKYM
Sbjct: 651 ILQLNRFPTRQQPNKYM 667

[Close]
BLAST of Lsi03G005700 vs. NCBI nr
Match: gi|659110061|ref|XP_008455028.1| (PREDICTED: QWRF motif-containing protein 2 [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 1.4e-62
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +V+  +ISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKA+ADIQNLKDAVGSAVD
Sbjct: 535 SVLKGQISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKAIADIQNLKDAVGSAVD 594

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH
Sbjct: 595 VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 654

Query: 144 ILQLNRFPTRQQPNKYM 161
           ILQLNRFPTRQQPNKYM
Sbjct: 655 ILQLNRFPTRQQPNKYM 671

[Close]
BLAST of Lsi03G005700 vs. NCBI nr
Match: gi|590687265|ref|XP_007042615.1| (Family of Uncharacterized protein function (DUF566), putative isoform 1 [Theobroma cacao])

HSP 1 Score: 209.1 bits (531), Expect = 5.5e-51
Identity = 109/129 (84.50%), Postives = 121/129 (93.80%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  +I+YLEEWALLDRDHSSS+LGATEALKASTLRLP+VGKA ADIQNLKDAV SAVD
Sbjct: 548 SILKGQIAYLEEWALLDRDHSSSLLGATEALKASTLRLPIVGKATADIQNLKDAVSSAVD 607

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSICSLS KVEE NS+VAELV VTAKERILL+QC+DFLSTLAA+QVKDCSLRTH
Sbjct: 608 VMQAMASSICSLSLKVEEMNSLVAELVSVTAKERILLEQCKDFLSTLAAIQVKDCSLRTH 667

Query: 144 ILQLNRFPT 153
           I+QLNR PT
Sbjct: 668 IIQLNRVPT 676

[Close]
BLAST of Lsi03G005700 vs. NCBI nr
Match: gi|255573137|ref|XP_002527498.1| (PREDICTED: QWRF motif-containing protein 2 isoform X1 [Ricinus communis])

HSP 1 Score: 198.4 bits (503), Expect = 9.7e-48
Identity = 101/129 (78.29%), Postives = 118/129 (91.47%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  +I+ LEEW+LLDRDHS+S+ GATEALKASTLRLP+VGK +AD+QNLKDAVGSAVD
Sbjct: 498 SILKGQITCLEEWSLLDRDHSTSLEGATEALKASTLRLPIVGKTIADVQNLKDAVGSAVD 557

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VM AMASSIC LSSK+EE NS+VAELV VTAKE+ LL+QC+DFLSTLAAMQVKDCSLRTH
Sbjct: 558 VMHAMASSICLLSSKMEEINSLVAELVNVTAKEKFLLEQCKDFLSTLAAMQVKDCSLRTH 617

Query: 144 ILQLNRFPT 153
           I+QLNR PT
Sbjct: 618 IIQLNRLPT 626

[Close]
BLAST of Lsi03G005700 vs. NCBI nr
Match: gi|743795123|ref|XP_011001820.1| (PREDICTED: QWRF motif-containing protein 2 [Populus euphratica])

HSP 1 Score: 198.4 bits (503), Expect = 9.7e-48
Identity = 102/129 (79.07%), Postives = 119/129 (92.25%), Query Frame = 1 

Query: 24  NVIPKKISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKALADIQNLKDAVGSAVD 83
           +++  +I++LEEW+ LDR HSSS+ GATEALKASTLRLPVVGK +AD+QNLKDAVGSAVD
Sbjct: 514 SILKGQIAHLEEWSHLDRGHSSSLQGATEALKASTLRLPVVGKTVADVQNLKDAVGSAVD 573

Query: 84  VMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTH 143
           VMQAMASSICSLSSKVE+TNS+VAELV VTAKER +L+QC+DFLSTLA +QVKDCS+RTH
Sbjct: 574 VMQAMASSICSLSSKVEDTNSLVAELVNVTAKERHMLEQCKDFLSTLATVQVKDCSVRTH 633

Query: 144 ILQLNRFPT 153
           ILQLNR PT
Sbjct: 634 ILQLNRLPT 642

The following BLAST results are available for this feature:
BLAST of Lsi03G005700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
QWRF2_ARATH2.0e-4065.63QWRF motif-containing protein 2 OS=Arabidopsis thaliana GN=QWRF2 PE=2 SV=1[more]
SCO3_ARATH2.0e-4066.67Protein SNOWY COTYLEDON 3 OS=Arabidopsis thaliana GN=SCO3 PE=1 SV=1[more]
AUG8_ARATH4.3e-2755.56AUGMIN subunit 8 OS=Arabidopsis thaliana GN=AUG8 PE=1 SV=1[more]
QWRF9_ARATH7.3e-2750.81QWRF motif-containing protein 9 OS=Arabidopsis thaliana GN=QWRF9 PE=3 SV=2[more]
QWRF4_ARATH8.3e-2343.90QWRF motif-containing protein 4 OS=Arabidopsis thaliana GN=QWRF4 PE=2 SV=1[more]
BLAST of Lsi03G005700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7R4_CUCSA9.8e-6395.62Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071450 PE=4 SV=1[more]
A0A061E271_THECC3.8e-5184.50Family of Uncharacterized protein function (DUF566), putative isoform 1 OS=Theob... [more]
B9SNC9_RICCO6.8e-4878.29Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174830 PE=4 SV=1[more]
A0A0B2SC34_GLYSO8.9e-4879.07Uncharacterized protein OS=Glycine soja GN=glysoja_020035 PE=4 SV=1[more]
I1NG16_SOYBN8.9e-4879.07Uncharacterized protein OS=Glycine max GN=GLYMA_20G132700 PE=4 SV=1[more]
BLAST of Lsi03G005700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49890.11.1e-4165.63 Family of unknown function (DUF566) [more]
AT3G19570.21.1e-4166.67 Family of unknown function (DUF566) [more]
AT4G30710.12.4e-2855.56 Family of unknown function (DUF566) [more]
AT5G43160.14.1e-2850.81 Family of unknown function (DUF566) [more]
AT2G24070.14.7e-2443.90 Family of unknown function (DUF566) [more]
BLAST of Lsi03G005700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438327|ref|XP_004136940.1|1.4e-6295.62PREDICTED: QWRF motif-containing protein 2-like [Cucumis sativus][more]
gi|659110061|ref|XP_008455028.1|1.4e-6295.62PREDICTED: QWRF motif-containing protein 2 [Cucumis melo][more]
gi|590687265|ref|XP_007042615.1|5.5e-5184.50Family of Uncharacterized protein function (DUF566), putative isoform 1 [Theobro... [more]
gi|255573137|ref|XP_002527498.1|9.7e-4878.29PREDICTED: QWRF motif-containing protein 2 isoform X1 [Ricinus communis][more]
gi|743795123|ref|XP_011001820.1|9.7e-4879.07PREDICTED: QWRF motif-containing protein 2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007573QWRF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G005700.1Lsi03G005700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007573QWRF familyPFAMPF04484DUF566coord: 25..121
score: 2.3
NoneNo IPR availablePANTHERPTHR31807FAMILY NOT NAMEDcoord: 30..151
score: 8.2
NoneNo IPR availablePANTHERPTHR31807:SF4PROTEIN SNOWY COTYLEDON 3-RELATEDcoord: 30..151
score: 8.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G005700Melon (DHL92) v3.6.1lsimedB260
Lsi03G005700Melon (DHL92) v3.6.1lsimedB271
Lsi03G005700Melon (DHL92) v3.6.1lsimedB281
Lsi03G005700Melon (DHL92) v3.6.1lsimedB285
Lsi03G005700Silver-seed gourdcarlsiB267
Lsi03G005700Silver-seed gourdcarlsiB342
Lsi03G005700Silver-seed gourdcarlsiB411
Lsi03G005700Silver-seed gourdcarlsiB672
Lsi03G005700Cucumber (Chinese Long) v3cuclsiB128
Lsi03G005700Cucumber (Chinese Long) v3cuclsiB300
Lsi03G005700Cucumber (Chinese Long) v3cuclsiB555
Lsi03G005700Watermelon (97103) v2lsiwmbB226
Lsi03G005700Watermelon (97103) v2lsiwmbB237
Lsi03G005700Watermelon (97103) v2lsiwmbB244
Lsi03G005700Wax gourdlsiwgoB307
Lsi03G005700Wax gourdlsiwgoB317
Lsi03G005700Wax gourdlsiwgoB320
Lsi03G005700Wax gourdlsiwgoB323
Lsi03G005700Wax gourdlsiwgoB344
Lsi03G005700Bottle gourd (USVL1VR-Ls)lsilsiB126
Lsi03G005700Bottle gourd (USVL1VR-Ls)lsilsiB130
Lsi03G005700Bottle gourd (USVL1VR-Ls)lsilsiB135
Lsi03G005700Cucumber (Gy14) v1cgylsiB367
Lsi03G005700Cucumber (Gy14) v1cgylsiB568
Lsi03G005700Cucurbita maxima (Rimu)cmalsiB116
Lsi03G005700Cucurbita maxima (Rimu)cmalsiB309
Lsi03G005700Cucurbita maxima (Rimu)cmalsiB484
Lsi03G005700Cucurbita maxima (Rimu)cmalsiB662
Lsi03G005700Cucurbita maxima (Rimu)cmalsiB723
Lsi03G005700Cucurbita moschata (Rifu)cmolsiB103
Lsi03G005700Cucurbita moschata (Rifu)cmolsiB411
Lsi03G005700Cucurbita moschata (Rifu)cmolsiB468
Lsi03G005700Cucurbita moschata (Rifu)cmolsiB650
Lsi03G005700Cucurbita moschata (Rifu)cmolsiB714
Lsi03G005700Cucurbita pepo (Zucchini)cpelsiB208
Lsi03G005700Cucurbita pepo (Zucchini)cpelsiB348
Lsi03G005700Cucurbita pepo (Zucchini)cpelsiB454
Lsi03G005700Cucurbita pepo (Zucchini)cpelsiB543
Lsi03G005700Wild cucumber (PI 183967)cpilsiB278
Lsi03G005700Wild cucumber (PI 183967)cpilsiB536
Lsi03G005700Cucumber (Chinese Long) v2culsiB116
Lsi03G005700Cucumber (Chinese Long) v2culsiB279
Lsi03G005700Cucumber (Chinese Long) v2culsiB522
Lsi03G005700Melon (DHL92) v3.5.1lsimeB247
Lsi03G005700Melon (DHL92) v3.5.1lsimeB258
Lsi03G005700Melon (DHL92) v3.5.1lsimeB272
Lsi03G005700Watermelon (Charleston Gray)lsiwcgB243
Lsi03G005700Watermelon (Charleston Gray)lsiwcgB223
Lsi03G005700Watermelon (Charleston Gray)lsiwcgB233
Lsi03G005700Watermelon (Charleston Gray)lsiwcgB251
Lsi03G005700Watermelon (97103) v1lsiwmB245
Lsi03G005700Watermelon (97103) v1lsiwmB247
Lsi03G005700Watermelon (97103) v1lsiwmB256
Lsi03G005700Watermelon (97103) v1lsiwmB268
Lsi03G005700Cucumber (Gy14) v2cgyblsiB103
Lsi03G005700Cucumber (Gy14) v2cgyblsiB488