Lsi03G005160 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G005160
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 5962222 .. 5962551 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTTCCAAAGAGACCGTAGTTATTTTTATTGGTGTGCTTTTGTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAAACAAGTTCCTCTTGAAGATGAAGCCAATGTTGTATATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGCAAGATGGAACAATCCAATTGATCACTGCAAATCTCCACAAGACTGCCAATATAGGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAATGTTAAAGGGGATAAAGATATCGTTCGTCCTCTACCATACATTGTTTAA

mRNA sequence

ATGGTTGTTTCCAAAGAGACCGTAGTTATTTTTATTGGTGTGCTTTTGTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAAACAAGTTCCTCTTGAAGATGAAGCCAATGTTGTATATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGCAAGATGGAACAATCCAATTGATCACTGCAAATCTCCACAAGACTGCCAATATAGGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAATGTTAAAGGGGATAAAGATATCGTTCGTCCTCTACCATACATTGTTTAA

Coding sequence (CDS)

ATGGTTGTTTCCAAAGAGACCGTAGTTATTTTTATTGGTGTGCTTTTGTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAAACAAGTTCCTCTTGAAGATGAAGCCAATGTTGTATATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGCAAGATGGAACAATCCAATTGATCACTGCAAATCTCCACAAGACTGCCAATATAGGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAATGTTAAAGGGGATAAAGATATCGTTCGTCCTCTACCATACATTGTTTAA

Protein sequence

MVVSKETVVIFIGVLLFSMNFVEIASAIRSIKQVPLEDEANVVYSPRVPIELHDDANQYARWNNPIDHCKSPQDCQYRIHGDEVRNMVVDTSKNVKGDKDIVRPLPYIV
Homology
[Close]
BLAST of Lsi03G005160 vs. TrEMBL
Match: A0A0A0K605_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G269050 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.4e-17
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1 

Query: 1   MVVSKETVVIFIGVLLFSMNFVEIASAIRSIKQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+ + +FIG+LLFS+NFVEIASA R IK+    D   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARWNNPIDHCKSPQDCQYRIHGDEVRNMV-VDTSKNVKGDKDIVRPLPYIV 110
           +YA W N +  CKS +  ++ I+GD+V N   V+TS+NVKGDKD     P+IV
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]
BLAST of Lsi03G005160 vs. TrEMBL
Match: A0A0A0K3T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G270050 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.0e-16
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 1   MVVSKETVVIFIGVLLFSMNFVEIASAIRSIKQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+ + +FIG+LLFS+NFVEIASA R IK+    D   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARWNNPIDHCKSPQDCQYRIHGDEVRNMV-VDTSKNVKGDKDIVRPLPYIV 110
           +YA W N +  CKS +  ++ I+ D+V N   V+TS+NVKGDKD     P+IV
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]
BLAST of Lsi03G005160 vs. NCBI nr
Match: gi|700189126|gb|KGN44359.1| (hypothetical protein Csa_7G269050 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 1 

Query: 1   MVVSKETVVIFIGVLLFSMNFVEIASAIRSIKQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+ + +FIG+LLFS+NFVEIASA R IK+    D   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARWNNPIDHCKSPQDCQYRIHGDEVRNMV-VDTSKNVKGDKDIVRPLPYIV 110
           +YA W N +  CKS +  ++ I+GD+V N   V+TS+NVKGDKD     P+IV
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]
BLAST of Lsi03G005160 vs. NCBI nr
Match: gi|700189127|gb|KGN44360.1| (hypothetical protein Csa_7G270050 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 1   MVVSKETVVIFIGVLLFSMNFVEIASAIRSIKQVPLEDEANVVYSP---RVPIELHDDAN 60
           MVVSK+ + +FIG+LLFS+NFVEIASA R IK+    D   VV  P    +  EL DDA 
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  QYARWNNPIDHCKSPQDCQYRIHGDEVRNMV-VDTSKNVKGDKDIVRPLPYIV 110
           +YA W N +  CKS +  ++ I+ D+V N   V+TS+NVKGDKD     P+IV
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKD-----PHIV 108

The following BLAST results are available for this feature:
BLAST of Lsi03G005160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G005160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K605_CUCSA9.4e-1750.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G269050 PE=4 SV=1[more]
A0A0A0K3T5_CUCSA8.0e-1649.56Uncharacterized protein OS=Cucumis sativus GN=Csa_7G270050 PE=4 SV=1[more]
BLAST of Lsi03G005160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G005160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189126|gb|KGN44359.1|1.4e-1650.44hypothetical protein Csa_7G269050 [Cucumis sativus][more]
gi|700189127|gb|KGN44360.1|1.1e-1549.56hypothetical protein Csa_7G270050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G005160.1Lsi03G005160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G005160Bottle gourd (USVL1VR-Ls)lsilsiB132
Lsi03G005160Cucumber (Gy14) v1cgylsiB367
Lsi03G005160Cucumber (Gy14) v1cgylsiB403
Lsi03G005160Cucurbita maxima (Rimu)cmalsiB116
Lsi03G005160Cucurbita maxima (Rimu)cmalsiB309
Lsi03G005160Cucurbita maxima (Rimu)cmalsiB484
Lsi03G005160Cucurbita maxima (Rimu)cmalsiB662
Lsi03G005160Cucurbita moschata (Rifu)cmolsiB103
Lsi03G005160Cucurbita moschata (Rifu)cmolsiB297
Lsi03G005160Cucurbita moschata (Rifu)cmolsiB468
Lsi03G005160Cucurbita moschata (Rifu)cmolsiB650
Lsi03G005160Cucurbita pepo (Zucchini)cpelsiB171
Lsi03G005160Cucurbita pepo (Zucchini)cpelsiB208
Lsi03G005160Cucurbita pepo (Zucchini)cpelsiB348
Lsi03G005160Cucurbita pepo (Zucchini)cpelsiB454
Lsi03G005160Cucurbita pepo (Zucchini)cpelsiB543
Lsi03G005160Wild cucumber (PI 183967)cpilsiB188
Lsi03G005160Wild cucumber (PI 183967)cpilsiB536
Lsi03G005160Cucumber (Chinese Long) v2culsiB189
Lsi03G005160Cucumber (Chinese Long) v2culsiB522
Lsi03G005160Melon (DHL92) v3.5.1lsimeB247
Lsi03G005160Melon (DHL92) v3.5.1lsimeB267
Lsi03G005160Watermelon (Charleston Gray)lsiwcgB242
Lsi03G005160Watermelon (Charleston Gray)lsiwcgB243
Lsi03G005160Watermelon (Charleston Gray)lsiwcgB233
Lsi03G005160Watermelon (97103) v1lsiwmB255
Lsi03G005160Watermelon (97103) v1lsiwmB268
Lsi03G005160Cucumber (Gy14) v2cgyblsiB103
Lsi03G005160Cucumber (Gy14) v2cgyblsiB173
Lsi03G005160Cucumber (Gy14) v2cgyblsiB488
Lsi03G005160Melon (DHL92) v3.6.1lsimedB260
Lsi03G005160Melon (DHL92) v3.6.1lsimedB271
Lsi03G005160Melon (DHL92) v3.6.1lsimedB280
Lsi03G005160Melon (DHL92) v3.6.1lsimedB285
Lsi03G005160Silver-seed gourdcarlsiB187
Lsi03G005160Silver-seed gourdcarlsiB267
Lsi03G005160Silver-seed gourdcarlsiB342
Lsi03G005160Silver-seed gourdcarlsiB736
Lsi03G005160Cucumber (Chinese Long) v3cuclsiB128
Lsi03G005160Cucumber (Chinese Long) v3cuclsiB205
Lsi03G005160Cucumber (Chinese Long) v3cuclsiB300
Lsi03G005160Cucumber (Chinese Long) v3cuclsiB555
Lsi03G005160Watermelon (97103) v2lsiwmbB226
Lsi03G005160Watermelon (97103) v2lsiwmbB236
Lsi03G005160Watermelon (97103) v2lsiwmbB244
Lsi03G005160Wax gourdlsiwgoB316
Lsi03G005160Wax gourdlsiwgoB314
Lsi03G005160Wax gourdlsiwgoB323