Lsi03G004890 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G004890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 5586455 .. 5589392 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAAATTATTTGTTTTTAGAAATTGTAAAATAATAGTCAAATTCTGAATGAAATAAAAATATCCATTCTTTTTTAAACCCCACGAGCTGATCCTGAAAGTAATATTATAATACTAGATATATCCAAAACCGTGCAATCACGTTACGCCACGTGTAGAAGTAAAAACATCACGTGCTTAATTGAAGTTTGTTAAGTCAATTAAATGAGAATTAAACACGGATTCATACTTAATTAGGCCGTGACTAAATTAAATTAAATAAACAAAAAAAAACCTGGTAAGAGAGAGAAAATGAGAGTGATTATGATTGGTTGGTCAAATAAATGAAGTGAAAGAGGGTTTTCTTGGAGGTTTCTTGTACTCGGTGACGTTGAACAGTTTTTGTAGTTACGCGGTCCACTCTAACGGCACAAACCGTTTAAGCTTCAGTTTCCTTTGATACGCTACTTCACTTATCATATATTTTTTTTTAATTTACCTTTTTCAAATGATATGCACGCACACGTGGATTTGAACCTCTAATCTCCATATTAGTTACGGTTGATTATGCTCACTTTGACGACTCACATTTTTTTTAATTATTTACAACTCTACTATGTTTTTCTCTTTCGTTAGATGATATAATATTAAATTTATTTTTACCCGTCATCTTAAGATTGTCCATTCGTGATTTAACATGGTATCAAAGCAGGTGGTCACAAAGTCCTATGTTTAAATCCCTACAATATTATTTCCTTCCCAATTAATATTGATTTCCACTTGTTAGATCTTTTCTATACTTCAAGCCTACAAGTGAGGATAAGTGTCAGATGATATAATATTAAATTTACCTTCACCAATCAGCTTAAACTTTTAGGTCAATCGGTGATTTAAGATCTTCTAAAAAAATTGCGTGTTATTATTTATAATTTTTTTTCCTTTCTACATGAATGGGGACTTTTATGATTAAACATTTAATTTGTTTAAAAGTTTCTAGTAAATCATTCATCAATGTATTTAAAAATGTTAAATAGATCTTTGAACTTTTAAATTTGTGTTTAATTGATCTCTTACCTGCTTAAGATTTTTAAAAATAAATTAAGCTCCATTTGATACAAATTTAAGTTAGAAGTATCTAATGAGATTCTAAACTTTTAACTTTTTATTTTATCTTTGTAGGAACAAAAATTTTAAAAACGTTGAGTATGTCAAAGATCTATTAGACAATTCAGAGATTTATTGGTAGCATAGAAAGATTAAGTACCTATTAGACACTTTTATAAATTTTTAAAACTTATTGATTATAAAACTGAAGAACAATGAGATCAATTTTAAAGTTTATAAAAGTTAAAAAAAATACTTAAGAGTTTAATTAATGATGAAACTTATAATTTAACCTAAATAATATTTAGATAGACTGTATCAACATGGAGGAGAAGCCACGTCTTAATATAGGTAAATTAAGGAAGAGGGTTAGGTGAGTAATTTCCTCATCCATGTGAGACAATAGGTGGGTCATGGGGTTTGACTAAGTGAGACAACACGTGACAGCTGGAGAAAGGAATGAACAAAAAGAATTTTGGTAGAAATTATTATTCGAGCAGAATTTTGTCTACCTCGGAGAATATTATGGAATTTTTTAAATACATAAATATGGCATTAATGATTCAAGTTAACTCTCGGTGAGTTATAATGGTGTATTTATAAAAAGAGATTGACGATCTAGGTCTTCTTTTGTCTCTTTTAGGAATCCGGTTACTCAATCATTTCATAAGATAATTTGTGATTTTTTATACTGTGAGGGTGTGTTGGATACGCCTCGTTTGCTTATTAGACTTCTTAGTTGAGGAGGTGGTCGGCCTTGAAGGTCGAAGATCGAATAAGCCAAAGTCGGGTTGGTTGGTCCAAAGGCTCGACTCACGCTCCGTATGTTAATTGGGCTCTTCGGCCTGATGAGTTGAGGGGTGAGTTGACCCAAAGGCCAAATTCCATTCCCTTGGCTCAATTCATCTTGTCTTGGTCTCGGTTCAGCTTCCTTTTTTTTCCTTATTTATTAGATTTATTTTTCGTCCAAAACTACCCATAACATAAGCATTAGGTAAAATTCACAACCAAATAAAGAAAATACTTTCTTAGAGTAAACAGCTTTTCATAAGAGAACGTATTTCTTTTTATAAATAATACAACCATACCTTTAATAAAAGAATATGTTTTTTTTTTTTAAAAGATAACTTTCTATATATCCTAAGATGTGATTATTTGAGTGACCAAAAATTAGCTAATCTACAAATATATAGTTTACTTATCAATTTTATACATAAAACACACAAAAAATTGTCCAATTCTTTCAACTTTTCTATTTGAGTGTTTGTTAAGTCTCATGTAGTTAAAAGTGATGCATTCACAGGTTTGTAATCCGTCTTATCATAAGAGACAATTATTCGTGACATTTTAAGCATTATATAAAAACATAAAATTGTCTTAAGAAAACAATGTGAATTCATTGGATTCGGATTTATAGTTTATTCTTCTCATTAATTTGGTATTACACCAATATTTAGTAGTGTAGCTAAAAATCCTACTTTTAACCGATTAGCCAAATTTATTGATATTTTTTTTATAAAAAAAAACTTATAATGAAGTAGTTTCCATTAGATATCTCCCTCTAAAAATTATAGAATATAAATTCAATGTAGTTTGACGGTTTTCTATATGGAAAATACTTAGATGTTGCCTGTGTGCAGCCCAAACAGCTATTCAATAAAAAAATTGTCATGTGACAATTTTTTTTAAAGAATGATTTTTTTTTCTTTGTATGTAAAGGAAATGGGAGCATGGAATTAGGCCTAATCATTGCTATTTGTGTATACACAAAAATGTCAACAACATATTGTGGCAGGTTGACAACCTTCTTAAATAATTTCTCTAATAAATCGCATGACTCTCCTCTTCAGTAA

mRNA sequence

ATGGTCAAATTATTTGTTTTTAGAAATTATATATCCAAAACCGTGCAATCACGTTACGCCACGTGTAGAAGTAAAAACATCACGTGCTTAATTGAAAGGGTTTTCTTGGAGGTTTCTTGTACTCGGAATCCGGTTACTCAATCATTTCATAAGATAATTTGTGATTTTTTATACTATATCTCCCTCTAAAAATTATAGAATATAAATTCAATGTAGTTTGACGGTTTTCTATATGGAAAATACTTAGATGTTGCCTGTGTGCAGCCCAAACAGCTATTCAATAAAAAAATTGTCATGTGACAATTTTTTTTAAAGAATGATTTTTTTTTCTTTGTATGTAAAGGAAATGGGAGCATGGAATTAGGCCTAATCATTGCTATTTGTGTATACACAAAAATGTCAACAACATATTGTGGCAGGTTGACAACCTTCTTAAATAATTTCTCTAATAAATCGCATGACTCTCCTCTTCAGTAA

Coding sequence (CDS)

ATGGTCAAATTATTTGTTTTTAGAAATTATATATCCAAAACCGTGCAATCACGTTACGCCACGTGTAGAAGTAAAAACATCACGTGCTTAATTGAAAGGGTTTTCTTGGAGGTTTCTTGTACTCGGAATCCGGTTACTCAATCATTTCATAAGATAATTTGTGATTTTTTATACTATATCTCCCTCTAA

Protein sequence

MVKLFVFRNYISKTVQSRYATCRSKNITCLIERVFLEVSCTRNPVTQSFHKIICDFLYYISL
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004890.1Lsi03G004890.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G004890Melon (DHL92) v3.6.1lsimedB260
Lsi03G004890Melon (DHL92) v3.6.1lsimedB271
Lsi03G004890Melon (DHL92) v3.6.1lsimedB280
Lsi03G004890Silver-seed gourdcarlsiB187
Lsi03G004890Cucumber (Chinese Long) v3cuclsiB205
Lsi03G004890Cucumber (Chinese Long) v3cuclsiB555
Lsi03G004890Watermelon (97103) v2lsiwmbB226
Lsi03G004890Watermelon (97103) v2lsiwmbB236
Lsi03G004890Watermelon (97103) v2lsiwmbB244
Lsi03G004890Wax gourdlsiwgoB314
Lsi03G004890Wax gourdlsiwgoB321
Lsi03G004890Wax gourdlsiwgoB323
Lsi03G004890Bottle gourd (USVL1VR-Ls)lsilsiB132
Lsi03G004890Cucumber (Gy14) v1cgylsiB367
Lsi03G004890Cucumber (Gy14) v1cgylsiB403
Lsi03G004890Cucurbita maxima (Rimu)cmalsiB116
Lsi03G004890Cucurbita maxima (Rimu)cmalsiB484
Lsi03G004890Cucurbita maxima (Rimu)cmalsiB662
Lsi03G004890Cucurbita moschata (Rifu)cmolsiB103
Lsi03G004890Cucurbita moschata (Rifu)cmolsiB468
Lsi03G004890Cucurbita moschata (Rifu)cmolsiB650
Lsi03G004890Cucurbita pepo (Zucchini)cpelsiB171
Lsi03G004890Cucurbita pepo (Zucchini)cpelsiB208
Lsi03G004890Cucurbita pepo (Zucchini)cpelsiB348
Lsi03G004890Cucurbita pepo (Zucchini)cpelsiB454
Lsi03G004890Cucurbita pepo (Zucchini)cpelsiB543
Lsi03G004890Wild cucumber (PI 183967)cpilsiB536
Lsi03G004890Cucumber (Chinese Long) v2culsiB189
Lsi03G004890Cucumber (Chinese Long) v2culsiB522
Lsi03G004890Melon (DHL92) v3.5.1lsimeB247
Lsi03G004890Melon (DHL92) v3.5.1lsimeB267
Lsi03G004890Watermelon (Charleston Gray)lsiwcgB242
Lsi03G004890Watermelon (Charleston Gray)lsiwcgB233
Lsi03G004890Watermelon (97103) v1lsiwmB255
Lsi03G004890Watermelon (97103) v1lsiwmB268
Lsi03G004890Cucumber (Gy14) v2cgyblsiB103
Lsi03G004890Cucumber (Gy14) v2cgyblsiB173
Lsi03G004890Cucumber (Gy14) v2cgyblsiB488