Lsi03G004660 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA polymerase I, putative
Location	chr03 : 5258707 .. 5269294 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTCCGCATCATTTTTCTTGATAGGACCCGTACTAAAATGGCTGAGGCGAGCGCCAACATAGGCGTTAATTTTCCGCCATTTTTGAACTCTTCATCGCGTAGTTCCTTACTGTCAAGGACTCTGAAAGCCGAGTCCGCATTAACATCGAAACTCAAAGCCAATACATGGAGAACGAAGCCGCTGAAGCTAACTGCCTTTGCAGCATCTTCTCGTTCTACTTCTGCGGCTTTTAATCAAACAGATGATGGGAAGTTTCAGCGAAGAATTGAAGCTGATAATCCAAGAAAGGGAAGGGTTTTTTTCTTGGATGTAAACCCTTTATGCTACCAAGGTAGCAGACCTAGTTTGCACAATTTTGGTCGCTGGGTTTCCATCTTCTTCGAAGAAGTTAGCCACAGTGATCCTGTTATTGCTGTAAGTGCCCTCGTCTTTGTATTGCATTTATTATCAATTATGGCGAGCGCTTAGTATGTTTGGTTTTGTACACTTTATATATTTATATACACATGCTACTGAGTTGGGGCCTAATTTTATACATTCTCGTGGATTCCGATTCCAATGTGTGAATGAATATATTGATTTTTCTCAGTATGGGTTCAAGTCATAATGGCTTTGTCTTGGAAGGACAATAAAATTTTCAAGGATAATTAAAAGAGTTTTGATGGTTTTTTATTAAAAGAGTAAGATATGGGATGAAAGAAATGCTAGAATCTTCCAAGACAAAGCCAAATCTCCCAAAGAAATATTACTCTGCTATTTTCAACGCCTTTTTTTGGTGTAAAGATTTACCGACTATTAAGAGCCATAGTTTCTCTCACCTTATTACAAATTGGAAACATCTTTTGTATTCCTTTAATTGAGACTCTTTTACCTTTGGATATTTCAATTAATGAAATAGTATTGAAATAGTTTCTTATCCAAAAGAAGAAGGAAAAAAATCCGTTGTCCTTCTATAGCCAAATGGGCCATAAAGGTGCAACATATGAGCTCTCGTAAGAGTTTTGGCTCTGCCTTTGAGCTCCCACCCCACGAACAATTCTTGGATTCAATCTATAATCATTTTGAGGAAACAGCAGTTCAGCTGAGCCTAAATGTTTTCAGAATGACAGACATCTGTATAATCTCTTGATGATGAAAACATGAGCATCTTTTCTATTTACTTTTTTTAACATGGGCCTTTTCACTTCGTTTAAGTATGCATGATTGTACCGTGTCGTCTATCGAGGAGACGTGTTAAAGGACATTCCATGACAGAAGGTCTTGTATTTCTGTCCAGAATTTATAAGTTGATTTTCTCAATGACTTAAAAGTTGTTCTTCGTTCAAATGGTGTTTTCTCTTTTAGGTTGCTAGATCATTTCCAAATTTGGAATATTGATTGTCCATAAGTTCTATTTGCTTGTGTAAGCGACTACTTGTGGTGTGAGAATTACAAGATCAACTGTTAACTGAGATAAAATTTGACTCCCTGCCTGCCTTCCAGCTGAATAGTGTTTCTAGTGCGGGAAGGGAGGTAAAAATTTAGATCCCATTTCTTTCTTAGCATTTTGGTTCAATGCTTAGTGGCTAGTGCAGTGAGTAAATGTCAGAAGTTTTGAGAAGGAGATCTTCATTTCTCTTTTAAGTGTAAATGCTTGTTGGAGTATAATGAGTCTGGCATTATTTTGTGGTCTTTGGTTGGAGTCAAGTTCATTACTTGGGAGATGGATGTACAGAACCACGAAGGCTGCAATATGGTTTCTTTGTGCATCAAATTTCTCCCAACTCTAGATACCCTTCCTTGATAGCCTTGTAACTAAGGTTTTGTCATTTTCTTATTTGCATTGTCAGATAGCTAAATATTTCCCTTCAAGTGAGACTTGTTTTCTTTGAATAAACTTCTCTTAATAAAGAAAAAGTTATCAAAATAAGTAGTATGCATTATTTCTCTAACTCTTCAAATTAGTTCTGGCTCTGCAGGTTTTTGATGGGGAAGGAGGTAGTGAGCATCGCAGGCAGTTGTTACCTTCATATAAAGCACATCGGATCAAATTCACGAGACAACCATCTTCACAAAGATTTACAAAGGGAAATTCTCGAAGGTCATATCAAGTGATAAGAGATGCTTTAAGAAACTGTAATGTTCCAGTAGGTGATCTTTGTCTAAATCTAAATATTTTGCGACATATTTGGTTGAACTTATTGATTGTGGTGTGGACTAGCTACTGCAAATTGCAGCAAGCTGACCGCCCTACTATTCAGGACCAAAATTGTTGCTGTCTGTGTATTAACTTTTGAAGAGACGCATTAAGACTCATCTTTTTCATGCTAAGAAACTACATCTTGCAGGTTGTAAAGGTTGATGGTCATGAAGCAGATGATGTTGTTGCTACACTTGCGGAACAAGTTTTGCAAAGAGAGGTTCGGGTGGTAATAGCCTCTCCTGATAAAGATTTCAAGCAGTTGATTTCAGAAGATGTCCAACTTGTGATGCCTTTGCCAGAGCTCAACAGGTGGTCCTTTTACACCTTAAGGCACTACCTAGCTCAGTACAACTGTGATCCGTGCTCTGACTTGAGTCTTAGTAAGTACTCTGTCTGCAAACATAAAATGTAGAAACCATTTAAAAAGAGAAGTTCAGACACACTTATATCAATTTTTTTTATCACACAGAACGATAAGTTCTTCAGAATATATGCACGTGCAATCATTGACCAAAAGTTAAAAAATATTAAATGTTGAAGTATGATATAGTGATTTATTGCACAGGATGCATTATGGGTGACGAGGTAGATGGCGTTCCAGGAATCCAGCATGTTGCTCCTGGATTTGGTCGAAAAACAGCGTTGAAACTCTTGAAGAAACATGGTTCTTTGGAGAATCTACTCAGTGCTGCTGCAATCAGAACTGTGGGCAAACCTTATGCACAAGATGCACTTACAAAGTATGCCGAATACCTGCGAACGAACTATAAAGTTCTAGCCTTAAGGAGGTGATTACTTTCCCTTCATTTTCCCCTTATGCGTGTCCTTGAATTGTAGCTGATTTTTTGACTAGGTTTTTATGGCTTTCGGTCGAATTGTTGTACAGAGATGTTGATGTTCAATTTCAAGATGAGTGGTTAGTTGAAAGAGACAGACAAAACGATTCAACTATTTTATCTAAGTTTGTAGAAAACAATGACAGAAACTCGCTCGTTCAACCATCGAAACGGGTCTAAATCCCCCTATGGTTGAATACATACAGGTAAAACTAGCTTAGCCTTTGTTAGATTATGATTTGATGCTTGGAAATATACATTACCTCCATACTATTAGTTGCTGGGGTAAAAGATGTATTATTCCTTTTCTCCTCATATATTGTGGAATGAAACTAAGCTATTTGCAATATCAGGGCTCTAATAGTACACTGCTTTCACTCTAAACAAATGTCTCTGTAATTCATTTGTACAGGCAGACAGCATCATCTGGTGAGTTAAAAAAATTTCTAATCTAACTTTGCCTCCTTCCAGTTCCAGCTGAGTTTAGACAAAGTTGTTAAAATAAAGACAGGATAAATTGTTTCACTGATTGGTTTCTGGTTCATTCAGATCCTTATAATCGATAGATTAGTTTTGTTTATGTAGAAGAAGGAATTGCAGAAACCATTATGGATAGGCGTAATAGTAAATAAAATTCATGAATTTGATAAAGGGCTAAGAGAAGATGAGTTCAATCCATGGTGGCCAGGCCAACCTACGATTTTTCTTGACACCTAAATGTTGTTAGGTTACATGAGTTGTCCCATTAGATTATTCAAGGTATAAGCTAGTCCAGACACTCACGGATATAAACAAGGAGCTGCAGAAAATTATAAAACTATTTTAACTTGTTAAAACTAACCGTTTCCAATGATCAAAATTGAATCAAATTCATCAAAACCAACGAAACATGTCCTAGACAAGACAATCTAAACTGTTTGAATTTCATAGTTAGATAAACTTTTGTGAGTTTCATCTCCATTTTGGCTTGTGGCCATGCATTGTAATCACTCAGAAAGGGAGAGAATGAAATGTGGGAGAAGAATTGATGTCTTCTAGTTGTTTTGTTTTGAATAAACAAATAATGTCTGTTGCTGGAAAAGTAGTAGTAAGAGAAGAATGTGCTGAAAGGTAAAGAGATTCGTAGGGAATATCCAATTAGAGATAGACAAACACAAATAGCAAAAGCTGGCTGTTAGTTATTGGTTATTGCCACTTATTGAACCATATCATCTTATCCACACCTTTTGGGTTCCTTCCCGTTCAATCAAACACACTATTTAGAATTTGAAAAGGTAATAGATTTTCTTTTTTATTATTATTTATTTATTTTACAGATGTGTCTCCTGTAATTGAAATACTCTTTGATTTGATAAAGCTTTATATTGAATTTGAATATTTTGGTTGGACTTTTAGTGCTTTTTTTTTAAAAAAAAAAAAAAAAATGGTTGATCTAGATTTCTTTCGAGAAAAATATTTATTCAACTATTTATTTTAAGTTAAAAATGAAAAATGGGCTTGTAAAATGTAAACAGAGTAGAACAAGCCGGTTGACTTTTTAAATTTTTTTTTAATTAATAATGTTGAAAATTTCAGGAACATTATTATAAACAGAAAAAATATCAACTTATTTACAAATATAGACAAATTTTACTGTATTTAAAATTTTTTTTTACAAATATAGACAATAAAATTTAGGAAAATTATTATAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTCACTGTCAGTCAGATAGACTACGATAGATTTCTATCGCTCAAGCAAATAAATTCTATCGCTTGAGCGATAGAATTCTATCGCGGTCTATCACCGATAAGCTGTAAAAATTTTCTATATTTATAAATAGTTTGATTCATTTTTCTATATTTGAAAAGAGCACTAAAATTTATTTGTAAATAGACAAATTTACAAATATAGACAATAAAATTTATTTGTAAATAGTTTGACTCATTTTTCTATATTTGAAAACAACCTAAAACTTAAACTACACATTTAGTCGAGGAAAAATATGCACTAGATTTGTTTTTAAAAGGGAAATTTTAAAAAATAGAAAAATAAGGGATACTATTTACTTAAAATAGCAAAATTTTTAGATAGTTGTAATAAACACTGATAAAAGTCTATTAGGATCTATCAGTGATAGAAATGGTAGAAGTCTATCAATGATAGAACTTTATCAATGTCTATCAATATATATTTTTTTATTATTTATAAATAGTTTGACATTTTTTCTATATGTGAAAATTTTCCTTTTTAAAATAGAATCAACCACTTGGTAAAAGTAATTAAGCCAAATGAAATAAACATAATTGATCGCCGAATTGACTAAAATTGAGAGTTTCGAAAAAGAAAAAAAAATTGACTAAAATTGAGTTGAACCAATTAAAACAAAGGAAATCTATCCAATTGAAACCAATTTAAATGATGCAAGTTAATAATTAACAACCCACGTTGAAAAAATACGAGAAAATTGTACTCATAGAATTCATACTCTATACTCTAAATCTATCCAATCTTAAGTTATAATTTAATTTTTTAAAAGGTACTTAAAGTAAGGAATGAAGTTGTAAACTCTAATAAATTAAGAAGTTAAAAGAGCAGTTAATTATTGAACCCACAATATGAAAAATTAATAAAACTTAAAATTATTGTTTTTTAAGTTGTTGAGACACAAACTTCAAGTGTCAAATAAGGAGTCGAGTTCCCAGATCTACTCTACTAACTTCTTAGGCTAAACATCTCGTTTGTGAGGTAGAATATCTAACCTCTCTATCTAATTATGATATAATATTTTATTTTATTAGTTCCACAATAATCTTAAGGAAAAAAATTCATATTGTGAATGATAGACACTAGAAATTAGAATTTTTATTATTATTATTATTATTTTTAAAAAAAGTTTTGGAGGATTCAAACTACTAGAAATGGGAAAATTTGAAGTAATATTATTTAAAATGATGTATTTGTGTGCTGTTTGTATATGGTAAAGTATTTGAGCAGCGTGAGATTGGCACGCTTAAAGCCACACAAAGCTCAAATAATCCCTTTCTCTTTCCTTCCTTTCTTTCTCTGTATGTGATTCCAATCCAATCCTCCATGGATTACCAAAACAAGTGAAGCTTTCTTCTAACAAACTCACTCCCATGGCTCTTCTTCTTCCTCATCTCTTCCCTTCTCTCTCCCTTCACTCCAAATCCAAAGATAATCCTCTTCTCTTCTCTCACATCAGAGCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCTCTCTCTTACCAGCGTTCATTCGCCTCAGCTTCGGGGCTCTCAACTCGCTTCTCCTCCTGGTTCCCCCGATTCCCGCTCCGATAAGCCAAGAGACGACTTCTATGTCAATCTCGGCCTGGCTGTTAGAACTCTTCGAGAAGACCTTCCTCTAATTTTCGCCAGAGACCTCAATTACGACATTTACAGGTACTTTTTCTCTATTTTTCTTTGGACTAATTTCTGTTTTTTTCTCTTCTTTCCAGCCGTCTTACTTTATTGGGGTTTTCCAGGGATGATATAACTTTTACTGATCCTCTCAACACCTTCACTGGGATTGAGAGGTACAAATTGATATTCTGGGCGTTGAGATTTCATGGCAAAATTCTCTTCCGGGAGATTGGAATTGAGGTTTACAGGATTTGGCAGCCTTCTGAAAACGTTATATTGATCCGGTGGAACTTGAAGGGCGTTCCTAGGGTTCCATGGGAAGCCAGGGGTGAATTTCAAGGGACTTCCCGGTATAAAGTGGATCGAAATGGGAAAATTTACGAACACAAAGTGGATAATTTAGCATTTAATTTCCCTCAACAACTGAAACCAGCTACGTCGGTGTTGGATTTGGTTTCTGCGTGCCCTGCAAGCCCTAATCCGACGTTCTTGTGGGGAACAGAGGATTTGCATTGTTCTTCCTGGGTCGAGCTTTATCAGGCAGTAAGGAGAAGTGTGGGTGGAGAAGGCTATTTGATTACACAAGATGGATTTCTTACATGTTCATAGTATATTTTATAATTCTGCCCTTTCAATATAGATTTCTACTTAGCCTTTTTGTTTTGTATTCTCACAATTATTGATAGCAAGTAATAGAGTACAATAAAAACAAAAACATTGTAGACAATCTTGTGAACAGACTCAAGGAAGGAAGGAGGGGGAAACACAATGGAAACCGAAGTGGCAGTGTCCAGAATGTCTTACTGTTCTGTCTGTTCTGTCATACAATCTTGTGAAGAAAATGAAAGCATTGTAGTGAATAACTGTCAGTTTTTTTTATATATAGACAAGTGAAGTGGGTGGCTACTGATGTGTTATTTGAAGCATAGATCTCCAAGGAATCCTGGGTTTATAATTATGTATACAGATGATATTATTGAAATTGTATAGTTCTATTTATTGCAAATCTTATGTATCAGGAGCTAAAAGTAATGGTGACGAGATAACTTACAGGTCAAAAGTGTTCTGCATTTCTGGAAAGACAGATAATCTCTGAATCTATTCTTATAATGCGGTTTACAATTATGCTGAATTCCGGGAAATGAGGGGTTTGGGAGGTGAAAGAGATCTAATTTCAGGTGCTGAACTGGGAAAGAGAGTATTCAACTTGTGCATTAGGATATCTGATCTTGATGGAATCTCATTCAGAAGGAATTGTTGGACGATTGGTTTTTTGAACCACTCCATCACAGAGTCTCCTGTTGCTCTCAGAACTACTTTACTGACCTCAAATGGGGATTCCACAGAGCTCAACATTTGAGCAACCACAAGCTTCAGAGTAGGTCCCGTAACCAATTTTATGCGCCTCGGAACTATTCCATAATACAACATTCGCTTCCTGAACCGATGGAGAGTGTGCACAACTGCTATAAGAGCAGCTCCAACCGACAAGTTCCGAATGTCGAGGGACCAGGCAATGTGTTGATCAAAGACAATGGCTTTTGGGAAGAGCTTATTCTCGTAAGCAACTTTCCAAATACAACGAGCTCGATTTATTTGTCCCATGAGAATGAGATAATTGAGGAGGACATTGACAAAGTATCTTGCACTGCTCTCTTCCAGCTCATAGTCGATGCCCTGAAAAAACTCCCTTACAAAAGACAAAACTGGTTGTTTCCTTTGTTCTGTTCCAGTGAACAGTCCACACAAAAAAGAGTGTGCCTTATGTCTTGTAGCACTGAGGATGGACATCAAATATCTTTCCTTCTGCTCATCTTGACACCTTACAAGATGGGCCAGGATGGATGTGTAGAGTATAAGATCAACTTTAGCAGCAGAATCTACATAAGTTTCTAAGAGAGGCATAGCTGACTCATACATCCCTTTCTTCATGCATGACTCAAACAATTGCCTGAGAATAAAGCTATTAGTTCTTATTCCAGATGAACCCATGAACTGAAGCCACCTCAAAGCGGAATCGATAGAGCCTTCCTTGATATACACCATCAAGACATCGCTAGCGCTCACATCAACAGAGAATCCCATGGCCTTCATTTCAAGTAAAACTTTTGCAGCAATATCGATAAGCTTCTTATTAGCCAGAAGTGTCAATAAAGCAGTGTACGTACTTAACCCGAGCCTCAAACCTGCATTAGTCATAGAGTTGTAGAGTTTCATGGCAGCATCTACTTGTCCCGACGCTGCGTGCATTTCCAAGAGACAGCAATAAGTAGATGGGATGGGAAGAAATCCAGCTTTCTCCATTTCGGTGAAGATAGACATTGCAACATCAAGTTTCCCTGATTTGGCATGTGACTCAACAACCATAGAGTACAAACCAAAGTTAGGCCTAAAACCTGCCCTTTTCATCTCATCCCAAAGCTTGAGAGCAGAATCCAATTTCCCAGCCTTCACATGTGACTCAATTAAGGAAACAAACATTGAAGCAGGCGGTCTGAGCTCAAGCAGCTGCATTTCCATGTAAATCTTCATCGATGTGTCGAGCCTCCCAGCTTTCCCCATAGAATCCACAAGGGATGTATAAACATTCAGGGCGGGACGATAATTCCTCTCTTTCATCTCTTGAAAGAGCTTCATTGCTGCATCAAGACGACCCGATTTTGCCAAACTTGGTATCATCAGCTCAAAGGTAGATGCATCTAAAGAACACCCTGCTCCTGCCATGCTCTCGTATATCTCGAAAGCCTTGTAAGGCAGACCCTTGTTTAAGAACAAGGTTATAAGAGAATTGTATGTTTGAGTATCAACCTTGAAACCTGAATCATGAATCTTCTTAAAACAACAGAAAGACACTTCCAATTTCTCAGCTTTAGCCAAGTACTGAATCACACGATTATATGCACTGAATGAGACAGTCCCATCACTGCTCAAATCACGAACAACCTCATCAAACAACAATTGAATTGCATCAAAATCTCTTCTCTGATTTAACCCATCAAACAACAACCCATAGCACTCATCATTTGGTGAATACCAGGACTGCCTCTTAGCCCAACGAAACAAGCTCAAAGAAGCCTCAGCATCATCGATAATCTTCAATGACTGAGTGATGTGCGTCATATTTGGAACAAATTGGAGCTTTTCGAGCTGAGATTCCAACTCTGGACCCCATTTCCACCTCGTTACAACCTCAACTATCTTAGCAACAGCCGATGCATTCAGAAAGGGCTTTTTGAGTCCGCCCACCATTACATGACCATCAAGACCTGGTTCAACCAACCGAACGCCTTTACCAGAGAAAATAACACTCCCCGACTCATCTAGATACTCAATATCCTCAGTCCACTCACTAGCCCCATTGCCACTGTTCTTTCCAGAACAATAAGATCTGATAAAACTAAGATTATTGAAAACATGTGACTTCTCAAGAAACTCAGAGTTTCTGGGTTTTAAAACAGATTCCGCTTCGCGCCATGAAATCGATGAAAAGAGGAAGGAAGCCGGCAGAAGAAATCGGCGCTTGTGGAGGGAATTGGAGGACCCGAAAAGTAGTTGTACAGCACGAAAAGGAAGCATACTGAAACTGGGTCTTTTCCTTAACTAGATTGTGAAATTGAATGAAGAAGGAAAATAGGAGAGAAATTTGTTCACGTACCCATATGCTTGTTGCGAAGAACTGCCGATTTCCTTGCAGACATTTTTACAAACAGGTGGTGGGCGGCAGAGAAGTTGTGTTTGAAATTGTCTTCTCAAACGAAATGGGGTGAATGAGAATGCCCAAAGCGAACTGGGCAAAGCTTTCTGCTTCTTATTCACACCGAAAGGAATCGAGAATCATCGATAAGCTGAGGATCTACACACAATCGGCTGGTAATGTCTTGTCTTCCAGTTCCGCCTCCTTTTGATGCTCAGCCCAGTCTCGACCTGCCCTGCCGGCCTGCCCACATTCACAATACGGCGGCCTACTTGAGTTTTGGCTAAATATATCGTTCCCTTCTTTAAATATGCCATTACGTTTTTCGGTTTTGTACTAATATTTTCAAATTATCAAATTTTACTTTAAAAAAAATATAATATATACACTTAAATTTTAGGAGTTGTATCAATTTAAATTCTAAACTTATAATTGTATCAATTTAAATC

mRNA sequence

TTTTTTCCGCATCATTTTTCTTGATAGGACCCGTACTAAAATGGCTGAGGCGAGCGCCAACATAGGCGTTAATTTTCCGCCATTTTTGAACTCTTCATCGCGTAGTTCCTTACTGTCAAGGACTCTGAAAGCCGAGTCCGCATTAACATCGAAACTCAAAGCCAATACATGGAGAACGAAGCCGCTGAAGCTAACTGCCTTTGCAGCATCTTCTCGTTCTACTTCTGCGGCTTTTAATCAAACAGATGATGGGAAGTTTCAGCGAAGAATTGAAGCTGATAATCCAAGAAAGGGAAGGGTTTTTTTCTTGGATGTAAACCCTTTATGCTACCAAGGTAGCAGACCTAGTTTGCACAATTTTGGTCGCTGGGTTTCCATCTTCTTCGAAGAAGTTAGCCACAGTGATCCTGTTATTGCTGTTTTTGATGGGGAAGGAGGTAGTGAGCATCGCAGGCAGTTGTTACCTTCATATAAAGCACATCGGATCAAATTCACGAGACAACCATCTTCACAAAGATTTACAAAGGGAAATTCTCGAAGGTCATATCAAGTGATAAGAGATGCTTTAAGAAACTGTAATGTTCCAGTTGTAAAGGTTGATGGTCATGAAGCAGATGATGTTGTTGCTACACTTGCGGAACAAGTTTTGCAAAGAGAGGTTCGGGTGGTAATAGCCTCTCCTGATAAAGATTTCAAGCAGTTGATTTCAGAAGATGTCCAACTTGTGATGCCTTTGCCAGAGCTCAACAGGTGGTCCTTTTACACCTTAAGGCACTACCTAGCTCAGTACAACTGTGATCCGTGCTCTGACTTGAGTCTTAGATGCATTATGGGTGACGAGGTAGATGGCGTTCCAGGAATCCAGCATGTTGCTCCTGGATTTGGTCGAAAAACAGCGTTGAAACTCTTGAAGAAACATGGTTCTTTGGAGAATCTACTCAGTGCTGCTGCAATCAGAACTGTGGGCAAACCTTATGCACAAGATGCACTTACAAAGTATGCCGAATACCTGCGAACGAACTATAAAGTTCTAGCCTTAAGGAGAGATGTTGATGTTCAATTTCAAGATGAGTGAGCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCTCTCTCTTACCAGCGTTCATTCGCCTCAGCTTCGGGGCTCTCAACTCGCTTCTCCTCCTGGTTCCCCCGATTCCCGCTCCGATAAGCCAAGAGACGACTTCTATGTCAATCTCGGCCTGGCTGTTAGAACTCTTCGAGAAGACCTTCCTCTAATTTTCGCCAGAGACCTCAATTACGACATTTACAGGGATGATATAACTTTTACTGATCCTCTCAACACCTTCACTGGGATTGAGAGGTACAAATTGATATTCTGGGCGTTGAGATTTCATGGCAAAATTCTCTTCCGGGAGATTGGAATTGAGGTTTACAGGATTTGGCAGCCTTCTGAAAACGTTATATTGATCCGGTGGAACTTGAAGGGCGTTCCTAGGGTTCCATGGGAAGCCAGGGGTGAATTTCAAGGGACTTCCCGGTATAAAGTGGATCGAAATGGGAAAATTTACGAACACAAAGTGGATAATTTAGCATTTAATTTCCCTCAACAACTGAAACCAGCTACGTCGGTGTTGGATTTGGTTTCTGCGTGCCCTGCAAGCCCTAATCCGACGTTCTTGTGGGGAACAGAGGATTTGCATTGTTCTTCCTGGGTCGAGCTTTATCAGGCAGTAAGGAGAAGTGTGGGTGGAGAAGGCTATTTGATTACACAAGATGGATTTCTTACATGTTCATAGTATATTTTATAATTCTGCCCTTTCAATATAGATTTCTACTTAGCCTTTTTGTTTTGTATTCTCACAATTATTGATAGCAAGTAATAGAGTACAATAAAAACAAAAACATTGTAGACAATCTTGTGAACAGACTCAAGGAAGGAAGGAGGGGGAAACACAATGGAAACCGAAGTGGCAGTGTCCAGAATGTCTTACTGTTCTGTCTGTTCTGTCATACAATCTTGTGAAGAAAATGAAAGCATTGTAGTGAATAACTGTCAGTTTTTTTTATATATAGACAAGTGAAGTGGGTGGCTACTGATGTGTTATTTGAAGCATAGATCTCCAAGGAATCCTGGGTTTATAATTATGTATACAGATGATATTATTGAAATTGTATAGTTCTATTTATTGCAAATCTTATGTATCAGGAGCTAAAAGTAATGGTGACGAGATAACTTACAGGTCAAAAGTGTTCTGCATTTCTGGAAAGACAGATAATCTCTGAATCTATTCTTATAATGCGGTTTACAATTATGCTGAATTCCGGGAAATGAGGGGTTTGGGAGGTGAAAGAGATCTAATTTCAGGTGCTGAACTGGGAAAGAGAGTATTCAACTTGTGCATTAGGATATCTGATCTTGATGGAATCTCATTCAGAAGGAATTGTTGGACGATTGGTTTTTTGAACCACTCCATCACAGAGTCTCCTGTTGCTCTCAGAACTACTTTACTGACCTCAAATGGGGATTCCACAGAGCTCAACATTTGAGCAACCACAAGCTTCAGAGTAGGTCCCGTAACCAATTTTATGCGCCTCGGAACTATTCCATAATACAACATTCGCTTCCTGAACCGATGGAGAGTGTGCACAACTGCTATAAGAGCAGCTCCAACCGACAAGTTCCGAATGTCGAGGGACCAGGCAATGTGTTGATCAAAGACAATGGCTTTTGGGAAGAGCTTATTCTCGTAAGCAACTTTCCAAATACAACGAGCTCGATTTATTTGTCCCATGAGAATGAGATAATTGAGGAGGACATTGACAAAGTATCTTGCACTGCTCTCTTCCAGCTCATAGTCGATGCCCTGAAAAAACTCCCTTACAAAAGACAAAACTGGTTGTTTCCTTTGTTCTGTTCCAGTGAACAGTCCACACAAAAAAGAGTGTGCCTTATGTCTTGTAGCACTGAGGATGGACATCAAATATCTTTCCTTCTGCTCATCTTGACACCTTACAAGATGGGCCAGGATGGATGTGTAGAGTATAAGATCAACTTTAGCAGCAGAATCTACATAAGTTTCTAAGAGAGGCATAGCTGACTCATACATCCCTTTCTTCATGCATGACTCAAACAATTGCCTGAGAATAAAGCTATTAGTTCTTATTCCAGATGAACCCATGAACTGAAGCCACCTCAAAGCGGAATCGATAGAGCCTTCCTTGATATACACCATCAAGACATCGCTAGCGCTCACATCAACAGAGAATCCCATGGCCTTCATTTCAAGTAAAACTTTTGCAGCAATATCGATAAGCTTCTTATTAGCCAGAAGTGTCAATAAAGCAGTGTACGTACTTAACCCGAGCCTCAAACCTGCATTAGTCATAGAGTTGTAGAGTTTCATGGCAGCATCTACTTGTCCCGACGCTGCGTGCATTTCCAAGAGACAGCAATAAGTAGATGGGATGGGAAGAAATCCAGCTTTCTCCATTTCGGTGAAGATAGACATTGCAACATCAAGTTTCCCTGATTTGGCATGTGACTCAACAACCATAGAGTACAAACCAAAGTTAGGCCTAAAACCTGCCCTTTTCATCTCATCCCAAAGCTTGAGAGCAGAATCCAATTTCCCAGCCTTCACATGTGACTCAATTAAGGAAACAAACATTGAAGCAGGCGGTCTGAGCTCAAGCAGCTGCATTTCCATGTAAATCTTCATCGATGTGTCGAGCCTCCCAGCTTTCCCCATAGAATCCACAAGGGATGTATAAACATTCAGGGCGGGACGATAATTCCTCTCTTTCATCTCTTGAAAGAGCTTCATTGCTGCATCAAGACGACCCGATTTTGCCAAACTTGGTATCATCAGCTCAAAGGTAGATGCATCTAAAGAACACCCTGCTCCTGCCATGCTCTCGTATATCTCGAAAGCCTTGTAAGGCAGACCCTTGTTTAAGAACAAGGTTATAAGAGAATTGTATGTTTGAGTATCAACCTTGAAACCTGAATCATGAATCTTCTTAAAACAACAGAAAGACACTTCCAATTTCTCAGCTTTAGCCAAGTACTGAATCACACGATTATATGCACTGAATGAGACAGTCCCATCACTGCTCAAATCACGAACAACCTCATCAAACAACAATTGAATTGCATCAAAATCTCTTCTCTGATTTAACCCATCAAACAACAACCCATAGCACTCATCATTTGGTGAATACCAGGACTGCCTCTTAGCCCAACGAAACAAGCTCAAAGAAGCCTCAGCATCATCGATAATCTTCAATGACTGAGTGATGTGCGTCATATTTGGAACAAATTGGAGCTTTTCGAGCTGAGATTCCAACTCTGGACCCCATTTCCACCTCGTTACAACCTCAACTATCTTAGCAACAGCCGATGCATTCAGAAAGGGCTTTTTGAGTCCGCCCACCATTACATGACCATCAAGACCTGGTTCAACCAACCGAACGCCTTTACCAGAGAAAATAACACTCCCCGACTCATCTAGATACTCAATATCCTCAGTCCACTCACTAGCCCCATTGCCACTGTTCTTTCCAGAACAATAAGATCTGATAAAACTAAGATTATTGAAAACATGTGACTTCTCAAGAAACTCAGAGTTTCTGGGTTTTAAAACAGATTCCGCTTCGCGCCATGAAATCGATGAAAAGAGGAAGGAAGCCGGCAGAAGAAATCGGCGCTTGTGGAGGGAATTGGAGGACCCGAAAAGTAGTTGTACAGCACGAAAAGGAAGCATACTGAAACTGGGTCTTTTCCTTAACTAGATTGTGAAATTGAATGAAGAAGGAAAATAGGAGAGAAATTTGTTCACGTACCCATATGCTTGTTGCGAAGAACTGCCGATTTCCTTGCAGACATTTTTACAAACAGGTGGTGGGCGGCAGAGAAGTTGTGTTTGAAATTGTCTTCTCAAACGAAATGGGGTGAATGAGAATGCCCAAAGCGAACTGGGCAAAGCTTTCTGCTTCTTATTCACACCGAAAGGAATCGAGAATCATCGATAAGCTGAGGATCTACACACAATCGGCTGGTAATGTCTTGTCTTCCAGTTCCGCCTCCTTTTGATGCTCAGCCCAGTCTCGACCTGCCCTGCCGGCCTGCCCACATTCACAATACGGCGGCCTACTTGAGTTTTGGCTAAATATATCGTTCCCTTCTTTAAATATGCCATTACGTTTTTCGGTTTTGTACTAATATTTTCAAATTATCAAATTTTACTTTAAAAAAAATATAATATATACACTTAAATTTTAGGAGTTGTATCAATTTAAATTCTAAACTTATAATTGTATCAATTTAAATC

Coding sequence (CDS)

ATGGCTGAGGCGAGCGCCAACATAGGCGTTAATTTTCCGCCATTTTTGAACTCTTCATCGCGTAGTTCCTTACTGTCAAGGACTCTGAAAGCCGAGTCCGCATTAACATCGAAACTCAAAGCCAATACATGGAGAACGAAGCCGCTGAAGCTAACTGCCTTTGCAGCATCTTCTCGTTCTACTTCTGCGGCTTTTAATCAAACAGATGATGGGAAGTTTCAGCGAAGAATTGAAGCTGATAATCCAAGAAAGGGAAGGGTTTTTTTCTTGGATGTAAACCCTTTATGCTACCAAGGTAGCAGACCTAGTTTGCACAATTTTGGTCGCTGGGTTTCCATCTTCTTCGAAGAAGTTAGCCACAGTGATCCTGTTATTGCTGTTTTTGATGGGGAAGGAGGTAGTGAGCATCGCAGGCAGTTGTTACCTTCATATAAAGCACATCGGATCAAATTCACGAGACAACCATCTTCACAAAGATTTACAAAGGGAAATTCTCGAAGGTCATATCAAGTGATAAGAGATGCTTTAAGAAACTGTAATGTTCCAGTTGTAAAGGTTGATGGTCATGAAGCAGATGATGTTGTTGCTACACTTGCGGAACAAGTTTTGCAAAGAGAGGTTCGGGTGGTAATAGCCTCTCCTGATAAAGATTTCAAGCAGTTGATTTCAGAAGATGTCCAACTTGTGATGCCTTTGCCAGAGCTCAACAGGTGGTCCTTTTACACCTTAAGGCACTACCTAGCTCAGTACAACTGTGATCCGTGCTCTGACTTGAGTCTTAGATGCATTATGGGTGACGAGGTAGATGGCGTTCCAGGAATCCAGCATGTTGCTCCTGGATTTGGTCGAAAAACAGCGTTGAAACTCTTGAAGAAACATGGTTCTTTGGAGAATCTACTCAGTGCTGCTGCAATCAGAACTGTGGGCAAACCTTATGCACAAGATGCACTTACAAAGTATGCCGAATACCTGCGAACGAACTATAAAGTTCTAGCCTTAAGGAGAGATGTTGATGTTCAATTTCAAGATGAGTGA

Protein sequence

MAEASANIGVNFPPFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRSTSAAFNQTDDGKFQRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE

Homology

[Close]

BLAST of Lsi03G004660 vs. Swiss-Prot
Match: EX53_AQUAE (5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-23
Identity = 75/258 (29.07%), Postives = 132/258 (51.16%), Query Frame = 1


Query: 89  FLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDP--VIAVFDGEGGSEHRRQLLPSYKA 148
           F  + PL      P+   +G ++ + F  +    P  ++ VFD    ++ R ++   YK 
Sbjct: 17  FFALPPLSTSKGFPTNAIYG-FLRMLFSLIKKERPQYLVVVFDAPAKTK-REKIYADYKK 76

Query: 149 HRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPVVKVDGHEADDVVATLAEQVLQRE 208
            R K       Q            VI++ L+   +P++++ G+EADDV+A LAE+  Q+ 
Sbjct: 77  QRPKAPDPLKVQ----------IPVIKEILKLAGIPLLELPGYEADDVIAYLAEKFSQKG 136

Query: 209 VRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQYNCDPCSDLSLRCIMGD 268
            +V I SPDKD  QL+SE+V ++ P+ +      +T    + ++  +P        ++GD
Sbjct: 137 FKVKIYSPDKDLLQLVSENVLVINPMND----EVFTKERVIKKFGVEPQKIPDYLALVGD 196

Query: 269 EVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGKPYAQDALTKYAEYLRT 328
           +VD VPGI+ V P    KTA+ +LKK+GS+EN+L         + + ++      E L  
Sbjct: 197 KVDNVPGIEGVGP----KTAINILKKYGSVENILKN------WEKFQREFPRAKKEDLEL 248

Query: 329 NYKVLALRRDVDVQFQDE 345
           +YK++ L  D+D++  +E
Sbjct: 257 SYKLVKLYTDLDIELSEE 248

[Close]

BLAST of Lsi03G004660 vs. Swiss-Prot
Match: DPO1_BACCA (DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.1e-19
Identity = 66/225 (29.33%), Postives = 113/225 (50.22%), Query Frame = 1


Query: 116 EEVSHSDPVIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDA 175
           EE +H   ++  FD  G +  R +    YK  R +   + S Q          + ++R+ 
Sbjct: 49  EEPTH---MLVAFDA-GKTTFRHEAFQEYKGGRQQTPPELSEQ----------FPLLREL 108

Query: 176 LRNCNVPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPEL 235
           LR   +P  +++ +EADD++ TLA +  Q    V + S D+D  QL S  V + +    +
Sbjct: 109 LRAYRIPAYELENYEADDIIGTLAARAEQEGFEVKVISGDRDLTQLASPHVTVDITKKGI 168

Query: 236 NRWSFYTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGS 295
                YT      +Y   P   + L+ +MGD+ D +PG+    PG G KTA+KLL++ G+
Sbjct: 169 TDIEPYTPEAVREKYGLTPEQIVDLKGLMGDKSDNIPGV----PGIGEKTAVKLLRQFGT 228

Query: 296 LENLLSAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQ 341
           +EN+L  A+I  +     ++ L ++ E    + K+ A+RRD  V+
Sbjct: 229 VENVL--ASIDEIKGEKLKETLRQHREMALLSKKLAAIRRDAPVE 253

[Close]

BLAST of Lsi03G004660 vs. Swiss-Prot
Match: DPO1_RICCN (DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=polA PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.0e-18
Identity = 63/219 (28.77%), Postives = 108/219 (49.32%), Query Frame = 1


Query: 124 VIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPV 183
           V  VFD  GG   R Q+ P YKA+R      P      +        ++RD   N N P+
Sbjct: 56  VAVVFDS-GGKNFRHQIYPDYKANR----PPPPEDLIIQ------LPLVRDVASNLNFPI 115

Query: 184 VKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTL 243
           ++ +G+EADD++AT A +       VVI S DKD  QL++E++++  PL    +  + T 
Sbjct: 116 LEKNGYEADDIIATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPL----KGKYITE 175

Query: 244 RHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAA 303
              + ++         +  ++GD  D +PG+    P  G KTA  L+ + GS+EN+ +  
Sbjct: 176 DDVVKKFGTTSDKLREVMALIGDRSDNIPGV----PSIGPKTASSLITQFGSVENIFN-- 235

Query: 304 AIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQ 343
           ++  V     ++ L    E    +++++ L  +VD+ FQ
Sbjct: 236 SLDQVSSVKQRETLQNSREAALISWQLIGLNSNVDLDFQ 253

[Close]

BLAST of Lsi03G004660 vs. Swiss-Prot
Match: DPO1_RICHE (DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.6e-18
Identity = 64/219 (29.22%), Postives = 107/219 (48.86%), Query Frame = 1


Query: 124 VIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPV 183
           V  VFD  GG   R  + P YKA+R      P      +        ++RD   N N P+
Sbjct: 56  VAVVFDS-GGKNFRHYIYPEYKANR----PPPPEDLIVQ------LPLVRDVASNLNFPI 115

Query: 184 VKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTL 243
           ++ +G+EADD++AT A +       VVI S DKD  QL+SE++++  PL    R  + T 
Sbjct: 116 LEKNGYEADDIIATFATKTAALGENVVIISSDKDLLQLMSENIKIYDPL----RGKYITE 175

Query: 244 RHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAA 303
              + ++         +  ++GD  D +PG+    P  G KTA  L+ + GS+EN+ +  
Sbjct: 176 DDVVKKFGTTSDKLREVMALIGDRSDNIPGV----PSIGPKTASSLITQFGSVENIFN-- 235

Query: 304 AIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQ 343
           ++  V     ++ L    E    +++++ L  +VD+ FQ
Sbjct: 236 SLDQVSSVKQRETLQNSREAALISWQLIGLDSNVDLDFQ 253

[Close]

BLAST of Lsi03G004660 vs. Swiss-Prot
Match: DPO1_RICFE (DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=polA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-17
Identity = 61/219 (27.85%), Postives = 106/219 (48.40%), Query Frame = 1


Query: 124 VIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPV 183
           V  VFD  GG   R  + P YKA+R      P  +            ++RD   N N P+
Sbjct: 56  VAVVFDS-GGKNFRHHIYPEYKANR-----PPPPEDLVV-----QLPLVRDVASNLNFPI 115

Query: 184 VKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTL 243
           ++ +G+EADD++AT A +       VV+ S DKD  QL+ E++++  PL    +  + T 
Sbjct: 116 LEKNGYEADDIIATFAAKTAALGEDVVVISSDKDLLQLMGENIKIYDPL----KGKYITE 175

Query: 244 RHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAA 303
              + ++         +  ++GD  D +PG+    P  G KTA  L+ + GS+EN+ +  
Sbjct: 176 DDVVKKFGTTSDKLREVMALIGDRSDNIPGV----PSIGPKTASSLITQFGSVENIFN-- 235

Query: 304 AIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQ 343
           ++  V     ++ L    E    +++++ L  +VD+ FQ
Sbjct: 236 SLEQVSSLKQRETLQNSKEAALISWQLIGLDSNVDLDFQ 253

[Close]

BLAST of Lsi03G004660 vs. TrEMBL
Match: A0A0A0LQN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402050 PE=4 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 2.8e-176
Identity = 314/344 (91.28%), Postives = 323/344 (93.90%), Query Frame = 1


Query: 1   MAEASANIGVNFPPFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRS 60
           MAEASANIGVNFPPFLNSSS + L SRTLK E  LTSKLK NTWRTKPL LTAFA SSR 
Sbjct: 1   MAEASANIGVNFPPFLNSSSPTFLPSRTLKPEFPLTSKLKPNTWRTKPLNLTAFAPSSRL 60

Query: 61  TSAAFNQTDDGKFQRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSH 120
           TSAAF QTDDGKFQ RIEADN R GRVFFLDVNPLCYQGS+PSL NFGRWVSIFFEEVSH
Sbjct: 61  TSAAFTQTDDGKFQPRIEADNSRTGRVFFLDVNPLCYQGSKPSLRNFGRWVSIFFEEVSH 120

Query: 121 SDPVIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCN 180
           SDPVIAVFDGEGGSEHRR LLPSYKAHRIKFTR PSS+RFTKGN R SYQVIRDALR+CN
Sbjct: 121 SDPVIAVFDGEGGSEHRRLLLPSYKAHRIKFTRPPSSKRFTKGNFRTSYQVIRDALRSCN 180

Query: 181 VPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSF 240
           VPVV+V+GHEADDV+ATL EQVLQR VRVV+ASPDKDFKQLISED+QLVMPLPELNRWSF
Sbjct: 181 VPVVRVEGHEADDVIATLVEQVLQRGVRVVVASPDKDFKQLISEDIQLVMPLPELNRWSF 240

Query: 241 YTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL 300
           YTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL
Sbjct: 241 YTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL 300

Query: 301 SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 345
           SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE
Sbjct: 301 SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 344

[Close]

BLAST of Lsi03G004660 vs. TrEMBL
Match: V4T8N9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001512mg PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 8.7e-117
Identity = 205/262 (78.24%), Postives = 236/262 (90.08%), Query Frame = 1


Query: 84  KGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAVFDGEGGSEHRRQLLPS 143
           K RVFFLDVNPLCY+GSRPSL +FGRW+S+FF++VSH+DPVIAVFDGEGG+EHRRQLLPS
Sbjct: 79  KKRVFFLDVNPLCYEGSRPSLQSFGRWLSLFFDQVSHADPVIAVFDGEGGTEHRRQLLPS 138

Query: 144 YKAHRIKFTRQ-PSSQRFTKGNSRRSYQVIRDALRNCNVPVVKVDGHEADDVVATLAEQV 203
           YKAHR KF RQ  +SQRF++G   RS+Q I D L  CNVPVVK++GHEADDV+ATL  QV
Sbjct: 139 YKAHRRKFLRQLTASQRFSRGRVGRSHQFILDVLGKCNVPVVKIEGHEADDVIATLVGQV 198

Query: 204 LQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQYNCDPCSDLSLRC 263
           LQ+  R VIASPDKDFKQLISEDVQLVMPL +L+RWSFYTL+HY+AQYNCDP S+LSLRC
Sbjct: 199 LQKGYRAVIASPDKDFKQLISEDVQLVMPLQDLDRWSFYTLKHYIAQYNCDPHSELSLRC 258

Query: 264 IMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGKPYAQDALTKYAE 323
           I+GD+VDGVPGIQHV PGFGRKTALKLLKKHGSLENLL+AAA+RTVG+ YAQ+ALTK+A+
Sbjct: 259 IVGDDVDGVPGIQHVVPGFGRKTALKLLKKHGSLENLLNAAAVRTVGRDYAQEALTKHAD 318

Query: 324 YLRTNYKVLALRRDVDVQFQDE 345
           YLR NY+VLALRRDVDV  +DE
Sbjct: 319 YLRRNYEVLALRRDVDVHLKDE 340

[Close]

BLAST of Lsi03G004660 vs. TrEMBL
Match: D7SRA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0072g00910 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 2.1e-115
Identity = 223/334 (66.77%), Postives = 263/334 (78.74%), Query Frame = 1


Query: 14  PFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRSTSAAFNQTDDGKF 73
           P L+ + R S LS   K       KL++ T R K     A   S  S + A NQT  G  
Sbjct: 17  PRLHPTPRPSSLSLPWK-------KLRSKT-RLKITVADATGNSRGSFTWALNQTVGGLL 76

Query: 74  QRRIEADNPR---KGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAVFDG 133
             R E+   +   K RVFFLDVNPLCY GS PSLH+FG WVS+FF++VS SDPVIAV DG
Sbjct: 77  LPRRESCEEKVRSKKRVFFLDVNPLCYTGSTPSLHSFGHWVSLFFQQVSLSDPVIAVIDG 136

Query: 134 EGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPVVKVDGHE 193
           E  +E+R++LLPSYKAHR KF++Q  SQRF+  ++ RS QV+RD LR CNVPV+K++G E
Sbjct: 137 ERCNEYRQKLLPSYKAHRRKFSKQLPSQRFSSVSAGRSRQVVRDVLRKCNVPVLKIEGCE 196

Query: 194 ADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQY 253
           ADDVVATL  QVLQR  RVVIASPDKDFKQLISE+VQ+VMP+PE  RWSFYTL+HY+AQY
Sbjct: 197 ADDVVATLVGQVLQRGYRVVIASPDKDFKQLISEEVQIVMPMPEFGRWSFYTLKHYIAQY 256

Query: 254 NCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGK 313
           NCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL+AAA+RTVG+
Sbjct: 257 NCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLNAAAVRTVGR 316

Query: 314 PYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 345
            YAQ+ALTKYA++LR NY++L+LRRDVDVQ ++E
Sbjct: 317 QYAQNALTKYADFLRRNYEILSLRRDVDVQLEEE 342

[Close]

BLAST of Lsi03G004660 vs. TrEMBL
Match: B9SLH3_RICCO (DNA polymerase I, putative OS=Ricinus communis GN=RCOM_0686700 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 1.1e-114
Identity = 222/339 (65.49%), Postives = 262/339 (77.29%), Query Frame = 1


Query: 14  PFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRSTSAAFNQTDDGKF 73
           P L  S+R+ L ++  K ++A T K    TW+   +     ++SS S+S  FNQT  G+F
Sbjct: 23  PCLPISTRN-LRNKKRKTKTAYTYK----TWKITAVSACTTSSSSSSSSGPFNQTVGGQF 82

Query: 74  ------QRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAV 133
                  R  E  + RK RVFFLDVNPLCY GS PSLH+FG W+S+FF +VS SDPVIAV
Sbjct: 83  LSGCEISRSGEERSRRKKRVFFLDVNPLCYAGSTPSLHSFGYWISLFFSQVSLSDPVIAV 142

Query: 134 FDGEGGSEHRRQLLPSYKAHRIKFTRQPSS-QRFTKGNS---RRSY-------QVIRDAL 193
            DGEGG EHRR+LLPSYKAHR KF  Q S+ Q+F+KG S   +RS        +V+ D L
Sbjct: 143 LDGEGGHEHRRKLLPSYKAHRRKFLSQSSAFQKFSKGQSSAFKRSSKGHVTRSEVVMDVL 202

Query: 194 RNCNVPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELN 253
             CNVPVVK++GHEADDVVATL EQVLQR  + V+ASPDKDFKQL+SEDVQ+V+P+ EL 
Sbjct: 203 TKCNVPVVKIEGHEADDVVATLVEQVLQRGYKAVVASPDKDFKQLVSEDVQIVLPVTELK 262

Query: 254 RWSFYTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSL 313
           RWSFYT++HY+AQYNCDPCSDLSLRCIMGDEVDG+PGIQ VAPGFGRKTALKLLKKHGSL
Sbjct: 263 RWSFYTIKHYIAQYNCDPCSDLSLRCIMGDEVDGIPGIQSVAPGFGRKTALKLLKKHGSL 322

Query: 314 ENLLSAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRR 336
           ENLL+ AAIRTVGKPYAQDALTK+A+YLR NY+VLALRR
Sbjct: 323 ENLLNVAAIRTVGKPYAQDALTKHADYLRRNYEVLALRR 356

[Close]

BLAST of Lsi03G004660 vs. TrEMBL
Match: K7MHK5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G156300 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 9.0e-114
Identity = 204/263 (77.57%), Postives = 230/263 (87.45%), Query Frame = 1


Query: 83  RKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAVFDGEGGSEHRRQLLP 142
           +K RVFFLDVNPLCY+GS+PSLH+ GRW+S+F E+VSH+DPVIAV DGE GSEHRR+LLP
Sbjct: 68  KKKRVFFLDVNPLCYEGSKPSLHSLGRWLSLFLEQVSHTDPVIAVIDGERGSEHRRKLLP 127

Query: 143 SYKAHRIKFTRQPSS-QRFTKGNSRRSYQVIRDALRNCNVPVVKVDGHEADDVVATLAEQ 202
           SYKAHR KFTR  SS QRF+ G+  RS QVI D L  CNVPV+KVDGHEADDVVATLA Q
Sbjct: 128 SYKAHRRKFTRHISSLQRFSSGHVGRSLQVINDVLGKCNVPVIKVDGHEADDVVATLAGQ 187

Query: 203 VLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQYNCDPCSDLSLR 262
           VL +  RVVIASPDKDFKQLIS+DVQ+VMPLPEL RWSFYTLRHY  QYNCDP SDLSLR
Sbjct: 188 VLNKGFRVVIASPDKDFKQLISDDVQIVMPLPELQRWSFYTLRHYRDQYNCDPESDLSLR 247

Query: 263 CIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGKPYAQDALTKYA 322
           CI+GDEVDGVPGIQH+ P FGRKTALKL+KKHGSLE LL+AAAIRTVG+PYAQDAL  +A
Sbjct: 248 CIVGDEVDGVPGIQHLVPSFGRKTALKLIKKHGSLETLLNAAAIRTVGRPYAQDALKNHA 307

Query: 323 EYLRTNYKVLALRRDVDVQFQDE 345
           +YLR NY+VLAL+RDV+VQ  +E
Sbjct: 308 DYLRRNYEVLALKRDVNVQLIEE 330

[Close]

BLAST of Lsi03G004660 vs. TAIR10
Match: AT1G34380.2 (AT1G34380.2 5'-3' exonuclease family protein)

HSP 1 Score: 378.3 bits (970), Expect = 5.2e-105
Identity = 191/311 (61.41%), Postives = 241/311 (77.49%), Query Frame = 1


Query: 40  KANTWRTKPLKLTAFAASSRSTSAAFNQTDDGK-FQRRIEADN-----PRKGRVFFLDVN 99
           K    RTK +  ++ + SS S+   F++T + +  Q+ +   N      +  RVFFLDV+
Sbjct: 22  KTQPSRTKWVSSSSSSFSSHSSVETFHRTGNVQVLQKDVLCGNNEEIRKKNKRVFFLDVS 81

Query: 100 PLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAVFDGEGGSEHRRQLLPSYKAHRIKFTR 159
           PLCY+G++PS   FG W+S+FF +VS +DPVIAV DGE G++ RR+LLPSYKAHR    +
Sbjct: 82  PLCYEGNKPSSQAFGHWISLFFSQVSLTDPVIAVIDGEEGNQRRRELLPSYKAHR----K 141

Query: 160 QPSSQRFTKGNSRRSYQVIRDALRNCNVPVVKVDGHEADDVVATLAEQVLQREVRVVIAS 219
            P+  R++K    R +Q + + LR CNVPVV+++GHEADDVVATL EQ +QR  R VIAS
Sbjct: 142 SPNHGRYSK----RPHQFVDEVLRKCNVPVVRIEGHEADDVVATLMEQAVQRGYRAVIAS 201

Query: 220 PDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPG 279
           PDKDFKQLISE+VQ+V+PL +L RWSFYTL+HY AQYNCDP SDLS RCIMGDEVDGVPG
Sbjct: 202 PDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYNCDPQSDLSFRCIMGDEVDGVPG 261

Query: 280 IQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGKPYAQDALTKYAEYLRTNYKVLAL 339
           IQH+ P FGRKTA+KL++KHGSLE+LLSAAA+RTVG+PYAQ+ALTKYA+YLR NY+VLAL
Sbjct: 262 IQHMVPAFGRKTAMKLVRKHGSLESLLSAAAVRTVGRPYAQEALTKYADYLRRNYQVLAL 321

Query: 340 RRDVDVQFQDE 345
            RDV VQ Q+E
Sbjct: 322 NRDVRVQIQNE 324

[Close]

BLAST of Lsi03G004660 vs. TAIR10
Match: AT3G52050.3 (AT3G52050.3 5'-3' exonuclease family protein)

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-18
Identity = 57/206 (27.67%), Postives = 108/206 (52.43%), Query Frame = 1


Query: 133 GSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPVVKVDGHEAD 192
           G   R  L P+YK++R      P+     +G      Q ++ +++  ++ V++V G EAD
Sbjct: 201 GMNFRHTLYPAYKSNR-----PPTPDTIVQG-----LQYLKASIKAMSIKVIEVPGVEAD 260

Query: 193 DVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQY-N 252
           DV+ TLA + +    +V + SPDKDF Q++S  ++L+   P  +  + + +  +  ++ N
Sbjct: 261 DVIGTLAMRSISAGFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGN 320

Query: 253 CDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGKP 312
            +P   + +  + GD+ D +PG+     G G   A++L+ + G+LENLL +      GK 
Sbjct: 321 LEPAQFVDIIALAGDKSDNIPGVD----GIGNVHAVELISRFGTLENLLQSVDEIKEGK- 380

Query: 313 YAQDALTKYAEYLRTNYKVLALRRDV 338
             +++L   A+    + K+  LR D+
Sbjct: 381 -IKESLIASADQAILSKKLALLRSDL 390

[Close]

BLAST of Lsi03G004660 vs. NCBI nr
Match: gi|659081211|ref|XP_008441212.1| (PREDICTED: uncharacterized protein LOC103485414 [Cucumis melo])

HSP 1 Score: 627.9 bits (1618), Expect = 1.1e-176
Identity = 317/344 (92.15%), Postives = 323/344 (93.90%), Query Frame = 1


Query: 1   MAEASANIGVNFPPFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRS 60
           M EASA IGVNFPPFLNSSSR+ L SRT     ALTSKLK NTWRTKPLKLTAF  SSR 
Sbjct: 1   MVEASAKIGVNFPPFLNSSSRTFLPSRT-----ALTSKLKPNTWRTKPLKLTAFVPSSRL 60

Query: 61  TSAAFNQTDDGKFQRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSH 120
           TSAAFNQTDDGKFQ RIEADNPRKGRVFFLDVNPLCYQG++PSL NFGRWVSIFFEEVSH
Sbjct: 61  TSAAFNQTDDGKFQPRIEADNPRKGRVFFLDVNPLCYQGNKPSLRNFGRWVSIFFEEVSH 120

Query: 121 SDPVIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCN 180
           SDPVIAVFDGEGGSEHRR LLPSYKAHRIKFTR PSSQRFTKGN R SYQVIRDALR+CN
Sbjct: 121 SDPVIAVFDGEGGSEHRRLLLPSYKAHRIKFTRPPSSQRFTKGNFRTSYQVIRDALRSCN 180

Query: 181 VPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSF 240
           VPVVKVDGHEADDVVATL EQVLQR VRVV+ASPDKDFKQLISEDVQLVMPLPELNRWSF
Sbjct: 181 VPVVKVDGHEADDVVATLVEQVLQRGVRVVVASPDKDFKQLISEDVQLVMPLPELNRWSF 240

Query: 241 YTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL 300
           YT+RHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL
Sbjct: 241 YTIRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL 300

Query: 301 SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 345
           SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE
Sbjct: 301 SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 339

[Close]

BLAST of Lsi03G004660 vs. NCBI nr
Match: gi|449441764|ref|XP_004138652.1| (PREDICTED: uncharacterized protein LOC101219234 [Cucumis sativus])

HSP 1 Score: 625.9 bits (1613), Expect = 4.1e-176
Identity = 314/344 (91.28%), Postives = 323/344 (93.90%), Query Frame = 1


Query: 1   MAEASANIGVNFPPFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRS 60
           MAEASANIGVNFPPFLNSSS + L SRTLK E  LTSKLK NTWRTKPL LTAFA SSR 
Sbjct: 1   MAEASANIGVNFPPFLNSSSPTFLPSRTLKPEFPLTSKLKPNTWRTKPLNLTAFAPSSRL 60

Query: 61  TSAAFNQTDDGKFQRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSH 120
           TSAAF QTDDGKFQ RIEADN R GRVFFLDVNPLCYQGS+PSL NFGRWVSIFFEEVSH
Sbjct: 61  TSAAFTQTDDGKFQPRIEADNSRTGRVFFLDVNPLCYQGSKPSLRNFGRWVSIFFEEVSH 120

Query: 121 SDPVIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCN 180
           SDPVIAVFDGEGGSEHRR LLPSYKAHRIKFTR PSS+RFTKGN R SYQVIRDALR+CN
Sbjct: 121 SDPVIAVFDGEGGSEHRRLLLPSYKAHRIKFTRPPSSKRFTKGNFRTSYQVIRDALRSCN 180

Query: 181 VPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSF 240
           VPVV+V+GHEADDV+ATL EQVLQR VRVV+ASPDKDFKQLISED+QLVMPLPELNRWSF
Sbjct: 181 VPVVRVEGHEADDVIATLVEQVLQRGVRVVVASPDKDFKQLISEDIQLVMPLPELNRWSF 240

Query: 241 YTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL 300
           YTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL
Sbjct: 241 YTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLL 300

Query: 301 SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 345
           SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE
Sbjct: 301 SAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 344

[Close]

BLAST of Lsi03G004660 vs. NCBI nr
Match: gi|1000950861|ref|XP_015579446.1| (PREDICTED: DNA polymerase I isoform X2 [Ricinus communis])

HSP 1 Score: 433.7 bits (1114), Expect = 3.0e-118
Identity = 228/348 (65.52%), Postives = 269/348 (77.30%), Query Frame = 1


Query: 14  PFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRSTSAAFNQTDDGKF 73
           P L  S+R+ L ++  K ++A T K    TW+   +     ++SS S+S  FNQT  G+F
Sbjct: 23  PCLPISTRN-LRNKKRKTKTAYTYK----TWKITAVSACTTSSSSSSSSGPFNQTVGGQF 82

Query: 74  ------QRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAV 133
                  R  E  + RK RVFFLDVNPLCY GS PSLH+FG W+S+FF +VS SDPVIAV
Sbjct: 83  LSGCEISRSGEERSRRKKRVFFLDVNPLCYAGSTPSLHSFGYWISLFFSQVSLSDPVIAV 142

Query: 134 FDGEGGSEHRRQLLPSYKAHRIKFTRQPSS-QRFTKGNS---RRSY-------QVIRDAL 193
            DGEGG EHRR+LLPSYKAHR KF  Q S+ Q+F+KG S   +RS        +V+ D L
Sbjct: 143 LDGEGGHEHRRKLLPSYKAHRRKFLSQSSAFQKFSKGQSSAFKRSSKGHVTRSEVVMDVL 202

Query: 194 RNCNVPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELN 253
             CNVPVVK++GHEADDVVATL EQVLQR  + V+ASPDKDFKQL+SEDVQ+V+P+ EL 
Sbjct: 203 TKCNVPVVKIEGHEADDVVATLVEQVLQRGYKAVVASPDKDFKQLVSEDVQIVLPVTELK 262

Query: 254 RWSFYTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSL 313
           RWSFYT++HY+AQYNCDPCSDLSLRCIMGDEVDG+PGIQ VAPGFGRKTALKLLKKHGSL
Sbjct: 263 RWSFYTIKHYIAQYNCDPCSDLSLRCIMGDEVDGIPGIQSVAPGFGRKTALKLLKKHGSL 322

Query: 314 ENLLSAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 345
           ENLL+ AAIRTVGKPYAQDALTK+A+YLR NY+VLALRRDVDV  Q+E
Sbjct: 323 ENLLNVAAIRTVGKPYAQDALTKHADYLRRNYEVLALRRDVDVHLQEE 365

[Close]

BLAST of Lsi03G004660 vs. NCBI nr
Match: gi|1000950857|ref|XP_015579444.1| (PREDICTED: DNA polymerase I isoform X1 [Ricinus communis])

HSP 1 Score: 433.7 bits (1114), Expect = 3.0e-118
Identity = 228/348 (65.52%), Postives = 269/348 (77.30%), Query Frame = 1


Query: 14  PFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRSTSAAFNQTDDGKF 73
           P L  S+R+ L ++  K ++A T K    TW+   +     ++SS S+S  FNQT  G+F
Sbjct: 23  PCLPISTRN-LRNKKRKTKTAYTYK----TWKITAVSACTTSSSSSSSSGPFNQTVGGQF 82

Query: 74  ------QRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEVSHSDPVIAV 133
                  R  E  + RK RVFFLDVNPLCY GS PSLH+FG W+S+FF +VS SDPVIAV
Sbjct: 83  LSGCEISRSGEERSRRKKRVFFLDVNPLCYAGSTPSLHSFGYWISLFFSQVSLSDPVIAV 142

Query: 134 FDGEGGSEHRRQLLPSYKAHRIKFTRQPSS-QRFTKGNS---RRSY-------QVIRDAL 193
            DGEGG EHRR+LLPSYKAHR KF  Q S+ Q+F+KG S   +RS        +V+ D L
Sbjct: 143 LDGEGGHEHRRKLLPSYKAHRRKFLSQSSAFQKFSKGQSSAFKRSSKGHVTRSEVVMDVL 202

Query: 194 RNCNVPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELN 253
             CNVPVVK++GHEADDVVATL EQVLQR  + V+ASPDKDFKQL+SEDVQ+V+P+ EL 
Sbjct: 203 TKCNVPVVKIEGHEADDVVATLVEQVLQRGYKAVVASPDKDFKQLVSEDVQIVLPVTELK 262

Query: 254 RWSFYTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSL 313
           RWSFYT++HY+AQYNCDPCSDLSLRCIMGDEVDG+PGIQ VAPGFGRKTALKLLKKHGSL
Sbjct: 263 RWSFYTIKHYIAQYNCDPCSDLSLRCIMGDEVDGIPGIQSVAPGFGRKTALKLLKKHGSL 322

Query: 314 ENLLSAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 345
           ENLL+ AAIRTVGKPYAQDALTK+A+YLR NY+VLALRRDVDV  Q+E
Sbjct: 323 ENLLNVAAIRTVGKPYAQDALTKHADYLRRNYEVLALRRDVDVHLQEE 365

[Close]

BLAST of Lsi03G004660 vs. NCBI nr
Match: gi|694400341|ref|XP_009375268.1| (PREDICTED: uncharacterized protein LOC103964103 [Pyrus x bretschneideri])

HSP 1 Score: 428.7 bits (1101), Expect = 9.5e-117
Identity = 223/346 (64.45%), Postives = 267/346 (77.17%), Query Frame = 1


Query: 1   MAEASANIGVNFPPFLNSSSRSSLLSRTLKAESALTSKLKANTWRTKPLKLTAFAASSRS 60
           M E +   GV+  PFL+ S    +  RT+          K   W+ + +  ++ ++SS +
Sbjct: 1   MVEVAVPTGVHIRPFLSVSPHHPI-RRTIVVT-------KTKPWKIRKVAASSSSSSSST 60

Query: 61  TSAA-FNQT-DDGKFQRRIEADNPRKGRVFFLDVNPLCYQGSRPSLHNFGRWVSIFFEEV 120
           TSA  + QT DDG  Q+ +  +   K RVFFLDVNPLCY GSRPSLH F  WVS+FF +V
Sbjct: 61  TSACGYKQTVDDG--QQVVLPNKASKKRVFFLDVNPLCYAGSRPSLHAFAHWVSLFFNQV 120

Query: 121 SHSDPVIAVFDGEGGSEHRRQLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRN 180
           S SDPVIAV DGEGGSEHRRQLLPSYKAHR KFTRQ     F+KG+  RS+ VI + LR 
Sbjct: 121 SLSDPVIAVVDGEGGSEHRRQLLPSYKAHRWKFTRQ-----FSKGHVGRSHGVITNVLRK 180

Query: 181 CNVPVVKVDGHEADDVVATLAEQVLQREVRVVIASPDKDFKQLISEDVQLVMPLPELNRW 240
           CNVPV+KV+GHEADDV+ATL  +VLQ   RVVIASPDKDFKQL+SEDVQLV+PL EL RW
Sbjct: 181 CNVPVIKVEGHEADDVIATLVGKVLQTGYRVVIASPDKDFKQLLSEDVQLVVPLDELERW 240

Query: 241 SFYTLRHYLAQYNCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLEN 300
           SFYTL+HY+AQYNCDPC DLSLRCI+GD  DGVPGIQH+APGFG+KTALKLLKKHGSLEN
Sbjct: 241 SFYTLKHYIAQYNCDPCCDLSLRCIVGDHADGVPGIQHLAPGFGQKTALKLLKKHGSLEN 300

Query: 301 LLSAAAIRTVGKPYAQDALTKYAEYLRTNYKVLALRRDVDVQFQDE 345
           LL+ AA+RTVG+ YAQDALTK+A+YLR NY++L+LRRDVDVQ ++E
Sbjct: 301 LLNTAAVRTVGRQYAQDALTKHADYLRRNYEILSLRRDVDVQLREE 331

The following BLAST results are available for this feature:

BLAST of Lsi03G004660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EX53_AQUAE	4.7e-23	29.07	5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3 SV=1	[more]
DPO1_BACCA	4.1e-19	29.33	DNA polymerase I OS=Bacillus caldotenax GN=polA PE=1 SV=1	[more]
DPO1_RICCN	2.0e-18	28.77	DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=polA P...	[more]
DPO1_RICHE	4.6e-18	29.22	DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1	[more]
DPO1_RICFE	2.9e-17	27.85	DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=polA P...	[more]

BLAST of Lsi03G004660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN4_CUCSA	2.8e-176	91.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402050 PE=4 SV=1	[more]
V4T8N9_9ROSI	8.7e-117	78.24	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001512mg PE=4 SV=1	[more]
D7SRA3_VITVI	2.1e-115	66.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0072g00910 PE=4 SV=...	[more]
B9SLH3_RICCO	1.1e-114	65.49	DNA polymerase I, putative OS=Ricinus communis GN=RCOM_0686700 PE=4 SV=1	[more]
K7MHK5_SOYBN	9.0e-114	77.57	Uncharacterized protein OS=Glycine max GN=GLYMA_16G156300 PE=4 SV=1	[more]

BLAST of Lsi03G004660 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34380.2	5.2e-105	61.41	5'-3' exonuclease family protein	[more]
AT3G52050.3	6.3e-18	27.67	5'-3' exonuclease family protein	[more]

BLAST of Lsi03G004660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081211\|ref\|XP_008441212.1\|	1.1e-176	92.15	PREDICTED: uncharacterized protein LOC103485414 [Cucumis melo]	[more]
gi\|449441764\|ref\|XP_004138652.1\|	4.1e-176	91.28	PREDICTED: uncharacterized protein LOC101219234 [Cucumis sativus]	[more]
gi\|1000950861\|ref\|XP_015579446.1\|	3.0e-118	65.52	PREDICTED: DNA polymerase I isoform X2 [Ricinus communis]	[more]
gi\|1000950857\|ref\|XP_015579444.1\|	3.0e-118	65.52	PREDICTED: DNA polymerase I isoform X1 [Ricinus communis]	[more]
gi\|694400341\|ref\|XP_009375268.1\|	9.5e-117	64.45	PREDICTED: uncharacterized protein LOC103964103 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR020046	5-3_exonucl_a-hlix_arch_N
IPR020045	DNA_polI_H3TH
IPR002421	5-3_exonuclease_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0042575	DNA polymerase complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004660.1	Lsi03G004660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002421	5'-3' exonuclease, N-terminal	SMART	SM00475	53exo3	coord: 85..342 score: 4.0
IPR020045	5'-3' exonuclease, C-terminal domain	PFAM	PF01367	5_3_exonuc	coord: 260..342 score: 1.9
IPR020045	5'-3' exonuclease, C-terminal domain	unknown	SSF47807	5' to 3' exonuclease, C-terminal subdomain	coord: 260..341 score: 7.92
IPR020046	5'-3' exonuclease, alpha-helical arch, N-terminal	PFAM	PF02739	5_3_exonuc_N	coord: 115..230 score: 1.0
None	No IPR available	PANTHER	PTHR10133	DNA POLYMERASE I	coord: 27..344 score: 5.0E
None	No IPR available	PANTHER	PTHR10133:SF38	5'-3' EXONUCLEASE FAMILY PROTEIN	coord: 27..344 score: 5.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G004660	Csa2G402050	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004660	CSPI02G24910	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004660	Cucsa.088370	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004660	CmaCh04G030110	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004660	CmoCh04G031320	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004660	Cla011917	Watermelon (97103) v1	lsiwmB275
Lsi03G004660	MELO3C008115	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004660	ClCG11G008230	Watermelon (Charleston Gray)	lsiwcgB227
Lsi03G004660	MELO3C008115.2	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G004660	Cla97C11G215340	Watermelon (97103) v2	lsiwmbB224
Lsi03G004660	Bhi04G002060	Wax gourd	lsiwgoB322
Lsi03G004660	Cp4.1LG01g26040	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G004660	CsGy2G024640	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004660	Carg06084	Silver-seed gourd	carlsiB017
Lsi03G004660	CsaV3_2G033430	Cucumber (Chinese Long) v3	cuclsiB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004660	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004660	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004660	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004660	Cucurbita pepo (Zucchini)	cpelsiB171
Lsi03G004660	Silver-seed gourd	carlsiB986