Lsi03G004520 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G004520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 5113951 .. 5116103 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTAGGTTTTCGATTCTGTTTGAATGTTCGTACGTGTTACTACTTGTTTCCTTGTTTTACGAGTTTGATTGTTTACTTTTACGATTTCGCGGTTGCTTGGACTGTATTGCGAGTAGATCTAACTGAGTAGGTTGTTTTTTTTTGTGTTCTCTCGGTTTGCAGATTCTTTGGTCCGTACAACAATGGAGACCGAAACTTCTTCTGTTCATCAGCGCTTGCTGCTAACGTGCGCCGGAGGCATTTCGGCGACGTTGCTTAGCCTCGTGGCCCTGGCCGAGGTGCTTGCTTCGTCTCAGGTGAAGTTACCGCTCTTTTCTTCTTCTCAATTCGTTATTGATCGTGTTTGGTATGTTGATTCTGTTTTCGATTAATTTTTATTTTTTTTTTTTTGTTTGTGAACTTTTGGAATTTATTATTACAAAACGAAAGTGATTTTAAATCAGAATAATTCGCTGTGGATTATATTAATTAGGTTTAAATTTTATCTGTCTAGTTTATTCTATTTTTATTTTTGAGCTTTTAAAATGTATATTTTAGTTTTTAAATTCTTGTTTTATTTAACTAATTTAGTGTATATTTTAGTTTATGTGTTTTCTTCTAAATATATAAAGTAGGGGATCCAATTTTTGCCTTCTATATCGATAATACAAGTTTTATACCATATGCTCATTTTTTTTAGTACATACCATATGCTTATTTTGACAAATAAAAAAACTATTTCAAGCATAATAACGACAAGCGTATAAGTTTAATAATCAATTGCTTTTAAGAATATATATTTACACGTTAATACAAGCATCATTTCAAGTTAAATAAGTTAAAAGGTAAACACTAGTCAAAGTCATGATTATTTTTTTAGAAATTTAAAAAATCAAATAGACACTAGAAGTTTATAAACTAAATAGAACAAATCTAAAAGTGAACCTTTTTTAAAAGTTAAATAAGAAAAATATAAGAAGATAAAAACTTAGGTAGGGTTGCATCTATATGTGCAACTTAGACAATCTAATAAAAAATTATCACGTGGCAAATATTTTTTAAAATAATATTTATTTTTATTTTTTTGTTTGTGTATAAAAGAAATGAGAAGCCTAAATTAGGTGCAATTTAATCATTGTTGGTATAAAAAACGTAAAAGTTAAAAGGTCAATAATTAGGTATAGTCAAGCTCCATACATCTCATTCATTTATCACATGGCAAAAAAAAGTAATAATTTAACTTCTTTTAAAAAGTCAATTTTTCTTACCACATGGAAGTTTTTAATTAGACAACTAATAGTAGGAGTGTACATCGGTCGACCGGTGTTGGTTTTGGATGAAAACTGGCACCAAAAACCGACCCAAAAAACTGGTTTAAATTCGACCGTCAATCGATCGGATAGTCGGTCGGTTTTGTCGTTTTTTTTACCTCATATATTTAGAACTTCATTCTTCATGGCTTGTGGATAAATAACTTCATTATTTATGGACTTATAGATATGAGAGAAGAATGAGATGAAGGAAGGAGGGAAAATTAATTAATTAATTAAAAATAAAAATAAAAAAGGGGGAAAAACCTATTACATACTATGGTTAGTTGGTCGGAGTTGTCAGTTTTTGGTAGAAAAAAATTGACCACCAACCGATGAAGGAACTTCTCCGACCAATCATGGTTGATTCGGTTAGTTTCAGCCTGTCGAATCGGTTTTCAGTGCCTTTATGTACACCCTTAATTAATAGGCTACACAAAATAAGCCTAGAAAGTACATAACAATTTTCTAAAAGTTAAAATATTAAAATGAAATATAAAGCTTATTTTAATTATTTTAATGCAAATGATTAGACACTGAAATGGTTCTTACCATTGGAAAAGAATAAATCATATTTTGTCTTTATTTAAACTCAATTTGCTCATGAAAGATGAGATTCCCGAGGTTTGTTGTCCTCTGATGTTTAGACCTATTATTTTCCATTTTTTTAATCTCTTTTTCAAACGTTTTTTTTTATTTCATTCTAAACGCGGAAACTTTTAGAAAGATATATGATTTACTTTTGGCTTATTCGATAATTTTCTCCAATTTGTGTCATTTCTCAAATTTGTGTCCTCTTGCTGTTTGAAATATTCAATAATTTTTGTCGTCTTGTTGATTTATTTAAATGAGTCCTTAC

mRNA sequence

ATGATTCTAGATTCTTTGGTCCGTACAACAATGGAGACCGAAACTTCTTCTGTTCATCAGCGCTTGCTGCTAACGTGCGCCGGAGGCATTTCGGCGACGTTGCTTAGCCTCGTGGCCCTGGCCGAGGTGCTTGCTTCGTCTCAGGTGAAGTTACCGCTCTTTTCTTCTTCTCAATTCGTTATTGATCGTGTTTGGTATGTTGATTCTGTTTTCGATTAATTTTTATTTTTTTTTTTTTGTTTGTGAACTTTTGGAATTTATTATTACAAAACGAAAGTGATTTTAAATCAGAATAATTCGCTGTGGATTATATTAATTAGGTTTAAATTTTATCTGTCTAGTTTATTCTATTTTTATTTTTGAGCTTTTAAAATGTATATTTTAGTTTTTAAATTCTTGTTTTATTTAACTAATTTAGTGTATATTTTAGTTTATGTGTTTTCTTCTAAATATATAAAGTAGGGGATCCAATTTTTGCCTTCTATATCGATAATACAAGTTTTATACCATATGCTCATTTTTTTTAGTACATACCATATGCTTATTTTGACAAATAAAAAAACTATTTCAAGCATAATAACGACAAGCGTATAAGTTTAATAATCAATTGCTTTTAAGAATATATATTTACACGTTAATACAAGCATCATTTCAAGTTAAATAAGTTAAAAGGTAAACACTAGTCAAAGTCATGATTATTTTTTTAGAAATTTAAAAAATCAAATAGACACTAGAAGTTTATAAACTAAATAGAACAAATCTAAAAGTGAACCTTTTTTAAAAGTTAAATAAGAAAAATATAAGAAGATAAAAACTTAGGTAGGGTTGCATCTATATGTGCAACTTAGACAATCTAATAAAAAATTATCACGTGGCAAATATTTTTTAAAATAATATTTATTTTTATTTTTTTGTTTGTGTATAAAAGAAATGAGAAGCCTAAATTAGGTGCAATTTAATCATTGTTGGTATAAAAAACGTAAAAGTTAAAAGGTCAATAATTAGGTATAGTCAAGCTCCATACATCTCATTCATTTATCACATGGCAAAAAAAAGTAATAATTTAACTTCTTTTAAAAAGTCAATTTTTCTTACCACATGGAAGTTTTTAATTAGACAACTAATAGTAGGAGTGTACATCGGTCGACCGGTGTTGGTTTTGGATGAAAACTGGCACCAAAAACCGACCCAAAAAACTGGTTTAAATTCGACCGTCAATCGATCGGATAGTCGGTCGGTTTTGTCGTTTTTTTTACCTCATATATTTAGAACTTCATTCTTCATGGCTTGTGGATAAATAACTTCATTATTTATGGACTTATAGATATGAGAGAAGAATGAGATGAAGGAAGGAGGGAAAATTAATTAATTAATTAAAAATAAAAATAAAAAAGGGGGAAAAACCTATTACATACTATGGTTAGTTGGTCGGAGTTGTCAGTTTTTGGTAGAAAAAAATTGACCACCAACCGATGAAGGAACTTCTCCGACCAATCATGGTTGATTCGGTTAGTTTCAGCCTGTCGAATCGGTTTTCAGTGCCTTTATGTACACCCTTAATTAATAGGCTACACAAAATAAGCCTAGAAAGTACATAACAATTTTCTAAAAGTTAAAATATTAAAATGAAATATAAAGCTTATTTTAATTATTTTAATGCAAATGATTAGACACTGAAATGGTTCTTACCATTGGAAAAGAATAAATCATATTTTGTCTTTATTTAAACTCAATTTGCTCATGAAAGATGAGATTCCCGAGGTTTGTTGTCCTCTGATGTTTAGACCTATTATTTTCCATTTTTTTAATCTCTTTTTCAAACGTTTTTTTTTATTTCATTCTAAACGCGGAAACTTTTAGAAAGATATATGATTTACTTTTGGCTTATTCGATAATTTTCTCCAATTTGTGTCATTTCTCAAATTTGTGTCCTCTTGCTGTTTGAAATATTCAATAATTTTTGTCGTCTTGTTGATTTATTTAAATGAGTCCTTAC

Coding sequence (CDS)

ATGATTCTAGATTCTTTGGTCCGTACAACAATGGAGACCGAAACTTCTTCTGTTCATCAGCGCTTGCTGCTAACGTGCGCCGGAGGCATTTCGGCGACGTTGCTTAGCCTCGTGGCCCTGGCCGAGGTGCTTGCTTCGTCTCAGGTGAAGTTACCGCTCTTTTCTTCTTCTCAATTCGTTATTGATCGTGTTTGGTATGTTGATTCTGTTTTCGATTAA

Protein sequence

MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLPLFSSSQFVIDRVWYVDSVFD
Homology
[Close]
BLAST of Lsi03G004520 vs. NCBI nr
Match: gi|778673023|ref|XP_004138812.2| (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 43/62 (69.35%), Postives = 46/62 (74.19%), Query Frame = 1 

Query: 1  MILDSLVRTTMETETSSVHQRLLLTCAGGISATLLSLVALAEVLASSQVKLPLFSSSQFV 60
          MI D L RTTME ET+SVHQRLLLT AGGISATL   VALAE+LASSQ    L S+   V
Sbjct: 1  MIRDFLDRTTMEIETASVHQRLLLTFAGGISATLFGFVALAELLASSQF---LDSNKMDV 59

Query: 61 ID 63
          ID
Sbjct: 61 ID 59

The following BLAST results are available for this feature:
BLAST of Lsi03G004520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G004520 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi03G004520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G004520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778673023|ref|XP_004138812.2|1.3e-0769.35PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004520.1Lsi03G004520.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G004520Cucsa.088240Cucumber (Gy14) v1cgylsiB098
Lsi03G004520CmaCh15G000410Cucurbita maxima (Rimu)cmalsiB276
Lsi03G004520CmoCh15G000410Cucurbita moschata (Rifu)cmolsiB265
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G004520Watermelon (97103) v2lsiwmbB224
Lsi03G004520Wax gourdlsiwgoB322
Lsi03G004520Cucurbita maxima (Rimu)cmalsiB656
Lsi03G004520Cucurbita moschata (Rifu)cmolsiB645
Lsi03G004520Cucurbita pepo (Zucchini)cpelsiB143
Lsi03G004520Cucurbita pepo (Zucchini)cpelsiB339
Lsi03G004520Wild cucumber (PI 183967)cpilsiB113
Lsi03G004520Cucumber (Chinese Long) v2culsiB115
Lsi03G004520Melon (DHL92) v3.5.1lsimeB259
Lsi03G004520Watermelon (Charleston Gray)lsiwcgB227
Lsi03G004520Watermelon (97103) v1lsiwmB275
Lsi03G004520Cucumber (Gy14) v2cgyblsiB102
Lsi03G004520Melon (DHL92) v3.6.1lsimedB272
Lsi03G004520Silver-seed gourdcarlsiB017
Lsi03G004520Silver-seed gourdcarlsiB986
Lsi03G004520Cucumber (Chinese Long) v3cuclsiB127