Lsi03G004350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G004350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChloroplastic group IIA intron splicing facilitator CRS1
Locationchr03 : 4918667 .. 4920143 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAAGTAAATTGATATGCTCTAATGTTGCTTACTTTATCTGAAAAATAACTGCTTTATGTTGCCATCCAGTTTTGGACTTTCAGTTCAATAGTCATACATATTATGCTTGGGATGTCTTTTTATGGTTATGGTTTCTCTTTCTTACTTTTCCTCTTGTACAGATGAAAACTGGTGGTATGGTTGTTTGGTGTAAGAAGAATGCTCTTGTTGTTTACCGGGGTTGCAATTATCCAGTGGATTTGAAACATAGTACAAAAATGCAAGTAGATAGCTCTTACTGTTCCAAAACTTCGTTGCTGAAACCAAATCCAATCAAGCTGGAAACAGACACTGATTTTTCAGTTGGTGAACATTATGAAAGTGGGTTAAATCAAGGTTTAAATGACAATGATGGCGAATGGGAAGAAGCTTCTAGTTCTTTCTTGAGGCATCATGGAAATTTCCAACCAATGAGTGGATCACTCTATGAGAGGGAAACTGACAGGCTACTAGATGATTTGGGCCCTCGCTTTATTGATTGGTGGATGCACAAACCTCTGCCGGTTGATGCTGACATGCTTCCAGAGGTGGTTCCTGGATATATGCCTCCATTTAGGCGCTGTCCACCCTTGACTATACCAAAGCTTACAGATGATGAACTACTACATCTGAGGAAGCTTGCACATTCCTTACCTACTCATTTTGTCCTTGGTATAAATTTTGTTGTTTTCTTCATTCAGTAAAATTTTTCTTGAGCTCTTCAGTTGCAATGTTAGCCGAGATAGGATGAACATAAAAATCAGGGTAGAAGGTTTCAAATATCTGTTTTTTTCCTGCTTAAAATTTATGGGAAGTCACAGCAAAGCTGAAGCAATTTAAGTGAAGGTCGCAAGCAACACAATGACATGTTCACCTTAACGGCTTAACTTGTTTGTTTATTTTTTTTCTTCCCTTAATTAGTTGGTCCAGTACAACAACTTCTAATCTAACAGTGTAGAAATGTCTTGACATAATTTTAAAAGGATGGTTAATGATCTTATGAACTGAGCCAAATCTGATATTTCGTTTCCACATAAACTAATCTTTAGGGTGCATGGTTTAACTCCACCCCCAATTGACATGCATTTTCATTTGTGGATAAATAGTATTTTGTGCTCTGCTTACGATGTTGTGTGTGCATGTTCATAGCTACATACAGACCCTGCTGTATTATGGCTTGATTGAATATTATTCACCTAGTTCATTCTGTATTTTACTCTCCTTCTGCATGTATTTATGTGTGCACTAATTTTTTATTTTCCAAATAATTGAAGGGAGAAACAGAAAACTTCAAGGGTTGGCTGCTGCCATCTTAAAGTTGTGGGAGAAAAGTCTGATAGCTAAGATTGCTTTGAAGTGGGGGGTTCCAAATACAAACAATGAGCAGATGGCATGCGAACTTAAGGCAAGTTTTCTAGAAATAATATTTGTTCTAAAACTGTATAAGTTGTGA

mRNA sequence

ATGACCCAAATGAAAACTGGTGGTATGGTTGTTTGGTGTAAGAAGAATGCTCTTGTTGTTTACCGGGGTTGCAATTATCCAGTGGATTTGAAACATAGTACAAAAATGCAAGTAGATAGCTCTTACTGTTCCAAAACTTCGTTGCTGAAACCAAATCCAATCAAGCTGGAAACAGACACTGATTTTTCAGTTGGTGAACATTATGAAAGTGGGTTAAATCAAGGTTTAAATGACAATGATGGCGAATGGGAAGAAGCTTCTAGTTCTTTCTTGAGGCATCATGGAAATTTCCAACCAATGAGTGGATCACTCTATGAGAGGGAAACTGACAGGCTACTAGATGATTTGGGCCCTCGCTTTATTGATTGGTGGATGCACAAACCTCTGCCGGTTGATGCTGACATGCTTCCAGAGGTGGTTCCTGGATATATGCCTCCATTTAGGCGCTGTCCACCCTTGACTATACCAAAGCTTACAGATGATGAACTACTACATCTGAGGAAGCTTGCACATTCCTTACCTACTCATTTTGTCCTTGGGAGAAACAGAAAACTTCAAGGGTTGGCTGCTGCCATCTTAAAGTTGTGGGAGAAAAGTCTGATAGCTAAGATTGCTTTGAAGTGGGGGGTTCCAAATACAAACAATGAGCAGATGGCATGCGAACTTAAGGCAAGTTTTCTAGAAATAATATTTGTTCTAAAACTGTATAAGTTGTGA

Coding sequence (CDS)

ATGACCCAAATGAAAACTGGTGGTATGGTTGTTTGGTGTAAGAAGAATGCTCTTGTTGTTTACCGGGGTTGCAATTATCCAGTGGATTTGAAACATAGTACAAAAATGCAAGTAGATAGCTCTTACTGTTCCAAAACTTCGTTGCTGAAACCAAATCCAATCAAGCTGGAAACAGACACTGATTTTTCAGTTGGTGAACATTATGAAAGTGGGTTAAATCAAGGTTTAAATGACAATGATGGCGAATGGGAAGAAGCTTCTAGTTCTTTCTTGAGGCATCATGGAAATTTCCAACCAATGAGTGGATCACTCTATGAGAGGGAAACTGACAGGCTACTAGATGATTTGGGCCCTCGCTTTATTGATTGGTGGATGCACAAACCTCTGCCGGTTGATGCTGACATGCTTCCAGAGGTGGTTCCTGGATATATGCCTCCATTTAGGCGCTGTCCACCCTTGACTATACCAAAGCTTACAGATGATGAACTACTACATCTGAGGAAGCTTGCACATTCCTTACCTACTCATTTTGTCCTTGGGAGAAACAGAAAACTTCAAGGGTTGGCTGCTGCCATCTTAAAGTTGTGGGAGAAAAGTCTGATAGCTAAGATTGCTTTGAAGTGGGGGGTTCCAAATACAAACAATGAGCAGATGGCATGCGAACTTAAGGCAAGTTTTCTAGAAATAATATTTGTTCTAAAACTGTATAAGTTGTGA

Protein sequence

MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELKASFLEIIFVLKLYKL
Homology
[Close]
BLAST of Lsi03G004350 vs. Swiss-Prot
Match: CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-51
Identity = 115/221 (52.04%), Postives = 146/221 (66.06%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           ++KTGG+VVW +     VYRG +Y   L+++ + +   +Y  + S     P+     T  
Sbjct: 220 EIKTGGLVVWTRGGIHFVYRGSSY---LENAKRHRDFVNYNEELS-----PVTSNNPT-- 279

Query: 63  SVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRFID 122
           S G+++        NDND    EA         + +P+ G+LYERE +RLLD LGPRFID
Sbjct: 280 SQGKYWSKDETL-TNDND----EADDK------DDKPIKGTLYEREVNRLLDSLGPRFID 339

Query: 123 WWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRN 182
           WW + PLPVDAD+LPEVVP +  PFR+CPP   P L D+EL +LRK A  LPTHFVLGRN
Sbjct: 340 WWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELTYLRKHARPLPTHFVLGRN 399

Query: 183 RKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
            KLQGLAAAILKLWEKSLIAK+A+K G+ NTN+EQMA  LK
Sbjct: 400 TKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLK 419

[Close]
BLAST of Lsi03G004350 vs. Swiss-Prot
Match: CRS1_ARATH (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 9.4e-47
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 1 

Query: 100 MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLT 159
           +S SLYERE DRLLD LGPR++DWWM +P PVDAD+LPEVV GYM P RRCPP T  KLT
Sbjct: 303 ISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLT 362

Query: 160 DDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMA 219
           D+EL +LR +A  LP HFVLGRN  LQGLA+AI+KLWEK +IAKIA+KWG  NTNNE+MA
Sbjct: 363 DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMA 422

Query: 220 CELK 224
            EL+
Sbjct: 423 DELR 426

[Close]
BLAST of Lsi03G004350 vs. Swiss-Prot
Match: CRS1_MAIZE (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-46
Identity = 89/126 (70.63%), Postives = 101/126 (80.16%), Query Frame = 1 

Query: 98  QPMSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPK 157
           +P+ G+LYERE +RLLD LGPRF+DWW   PLPVDAD+LPE VPG   P+R CPP   P 
Sbjct: 292 EPVKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPT 351

Query: 158 LTDDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQ 217
           L D+EL +LRKLA  LPTHF LGRN +LQGLAAAILKLWEKSLIAKIA+K G+ NTNNEQ
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411

Query: 218 MACELK 224
           MA  LK
Sbjct: 412 MAWNLK 417

[Close]
BLAST of Lsi03G004350 vs. Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.5e-39
Identity = 98/228 (42.98%), Postives = 120/228 (52.63%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPV-------DLKHSTKMQVDSSYCSKTSLLKPNPIK 62
           + KTGG+V+W   + +++YRG NY         DL H       S         +   I 
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQSIA 289

Query: 63  LETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDD 122
            E+       +  +  L QG+   D                FQ         E DRLL+ 
Sbjct: 290 -ESSAPSITNKMVKPMLTQGVGSPDKV-------------RFQLPGEVQLVEEADRLLEG 349

Query: 123 LGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPT 182
           LGPRF DWW + PLPVD D+LP VVP Y  PFR  P    PKLTDDE+  +R+L   LP 
Sbjct: 350 LGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPC 409

Query: 183 HFVLGRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           HF LGRNR LQGLA AI+KLWEK  +AKIA+K GV NTN+E MA ELK
Sbjct: 410 HFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELK 443

[Close]
BLAST of Lsi03G004350 vs. Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.4e-36
Identity = 93/221 (42.08%), Postives = 126/221 (57.01%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           + KTGG+V+W    ++ +YRG  Y +        +   +   K+S+ +P    L  +   
Sbjct: 240 ERKTGGLVIWRSGTSVSLYRGVAYDIPEPTKGTSKNTQTLGMKSSIKEPPGHSLLPNE-- 299

Query: 63  SVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRFID 122
            V E         + DN+G    A  S        +P+    YE E D+LLD+LGPR+ D
Sbjct: 300 KVNE---------MQDNNG----ALVSNAEKDTLVEPVPEIKYEDEIDKLLDELGPRYDD 359

Query: 123 WWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRN 182
           W    P PVDAD+LP  VPGY PPFR  P    P L+  +  +LR+LA  LP HF LGR+
Sbjct: 360 WPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLPPHFALGRS 419

Query: 183 RKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           R+LQGLAAA++KLWEKS IAKIALK GV  T +E+MA ++K
Sbjct: 420 RQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIK 445

[Close]
BLAST of Lsi03G004350 vs. TrEMBL
Match: A0A0A0LSY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404830 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.3e-98
Identity = 183/242 (75.62%), Postives = 198/242 (81.82%), Query Frame = 1 

Query: 1   MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDT 60
           + +MKTGGMVVW KKNALVVYRGCNYP++LKHSTK QV  S          NP+K+ETDT
Sbjct: 251 IVEMKTGGMVVWSKKNALVVYRGCNYPLNLKHSTKKQVHIS--------PQNPVKVETDT 310

Query: 61  DFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRF 120
            FS+  HYESGLN+ +NDNDGEWEEASS FL  H N QP+SGSLYERETDRLLDDLGPRF
Sbjct: 311 HFSLSGHYESGLNRSINDNDGEWEEASSFFLIRHENLQPLSGSLYERETDRLLDDLGPRF 370

Query: 121 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLG 180
           IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLG
Sbjct: 371 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRKLAHSLPTHFVLG 430

Query: 181 RNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK-----ASFLEIIFVLKL 238
           RNRKLQGLAA+ILKLWEKS+IAKIALKWGVPNT+NEQMA ELK        L   FV+ L
Sbjct: 431 RNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTLLLRNKFVIIL 484

[Close]
BLAST of Lsi03G004350 vs. TrEMBL
Match: M5WXK2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016241mg PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.2e-66
Identity = 141/240 (58.75%), Postives = 171/240 (71.25%), Query Frame = 1 

Query: 1   MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDT 60
           + + KTGGMVVW KK+ LV+YRGCNY    K   KM+  S+   +T         LE ++
Sbjct: 301 IVETKTGGMVVWGKKDTLVIYRGCNYQSSSKFFPKMRPCSADRQETLSSDHMQPDLEENS 360

Query: 61  DFSVGEHYESGLNQGLNDNDGEWE-EASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPR 120
            +   + +ES +++ ++  D E +   S +F     + QP S SLYE+E DRLLD LGPR
Sbjct: 361 SYQY-KSFESPVDEKMSRKDAEEDCIQSGTFQETSMSCQPTSRSLYEKEADRLLDGLGPR 420

Query: 121 FIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVL 180
           FIDWWMHKPLPVDAD+LPEVVPG+  P RRCPP T  KLTDDEL  LRK A SLPTHFVL
Sbjct: 421 FIDWWMHKPLPVDADLLPEVVPGFKAPIRRCPPHTRSKLTDDELTFLRKFARSLPTHFVL 480

Query: 181 GRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELKASFLEI--IFVLKLYK 238
           GRNRKLQGLAAAILKLWEKSLIAKIA+K+GVPNTNNEQMA EL+A  L +   F++ LY+
Sbjct: 481 GRNRKLQGLAAAILKLWEKSLIAKIAVKFGVPNTNNEQMAYELRARVLILRNKFIILLYR 539

[Close]
BLAST of Lsi03G004350 vs. TrEMBL
Match: W9S0T5_9ROSA (Chloroplastic group IIA intron splicing facilitator CRS1 OS=Morus notabilis GN=L484_027056 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.7e-66
Identity = 139/225 (61.78%), Postives = 166/225 (73.78%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           +MKTGG+VVW +K+A V+YRGCNY    K   +     S   +T     N ++L++    
Sbjct: 256 EMKTGGLVVWRRKDAQVIYRGCNYQPTSKTFPRTYAGFSGHQETPF--SNLVQLDSRKGN 315

Query: 63  SVGE--HYESGLNQGLNDNDGEWEEASSSF-LRHHGNFQPMSGSLYERETDRLLDDLGPR 122
           SV E   YE+ + + ++  + E E   ++  L++  NFQP S SLY RE DRLLD LGPR
Sbjct: 316 SVSEVKSYENTIERKISKKNTEGETIPTAIILKNDANFQP-SSSLYVREADRLLDGLGPR 375

Query: 123 FIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVL 182
           FIDWWM+KPLPVDAD+LPEVVPG+ PPFRRCPP T  KLTD+EL +LRKLAHSLPTHFVL
Sbjct: 376 FIDWWMNKPLPVDADLLPEVVPGFRPPFRRCPPHTRSKLTDEELTYLRKLAHSLPTHFVL 435

Query: 183 GRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELKA 225
           GRNRKLQGLAAAILKLWEK  IAKIA+K GVPNTNNEQMA ELKA
Sbjct: 436 GRNRKLQGLAAAILKLWEKCHIAKIAVKLGVPNTNNEQMAYELKA 477

[Close]
BLAST of Lsi03G004350 vs. TrEMBL
Match: G7IHY0_MEDTR (Group IIA intron splicing facilitator CRS1 OS=Medicago truncatula GN=MTR_2g100660 PE=4 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-64
Identity = 133/223 (59.64%), Postives = 159/223 (71.30%), Query Frame = 1 

Query: 1   MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDT 60
           + +MKTGG+VVW KK+ALVVYRGCNY +  K STK+        KT+  + N +KL T  
Sbjct: 228 IVEMKTGGLVVWSKKDALVVYRGCNYKLTSKGSTKIDTGYIPSRKTNSYEMNGVKLATIG 287

Query: 61  DFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRF 120
           D    E   S     L   + + + + S+ + H  N+QP +GSLYERE DRLLD LGPRF
Sbjct: 288 DLYRAESDRS--TSELPSWNADHKHSLSTDI-HDMNYQPANGSLYERECDRLLDGLGPRF 347

Query: 121 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLG 180
           IDWWMHKPLPVDAD+LPEVVPG+ PP R CPP    KLTD EL + R+++H LPTHFVLG
Sbjct: 348 IDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKLTDGELTYFRRISHPLPTHFVLG 407

Query: 181 RNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           RNR LQGLAAAILKLW KS IAKIA+K+GV NT+NE MA ELK
Sbjct: 408 RNRGLQGLAAAILKLWHKSHIAKIAIKYGVQNTDNETMANELK 447

[Close]
BLAST of Lsi03G004350 vs. TrEMBL
Match: A0A061EGM4_THECC (Chloroplast splicing factor CRS1, putative isoform 3 OS=Theobroma cacao GN=TCM_019399 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61
Identity = 128/222 (57.66%), Postives = 155/222 (69.82%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           +MKT G+VVW KK+ALVVYRGC++ +  K S+      +   + S    + +    + + 
Sbjct: 257 EMKTRGLVVWGKKDALVVYRGCSHGLTSKISSMKYPRCADGQEISSSTFSHLTSSNNINM 316

Query: 63  SVGEHYESGLNQGLNDNDGEWEEASSS-FLRHHGNFQPMSGSLYERETDRLLDDLGPRFI 122
           S+ +   S L  GL   D E E    + F++   N QP+ GSLYERETDRLLD LGPRFI
Sbjct: 317 SLEKFNGSTLQSGLYREDREKESMPINIFMKEDENNQPVIGSLYERETDRLLDGLGPRFI 376

Query: 123 DWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGR 182
           DWWM KPLP+DAD+LPE VPG+ PP R  PP T P LTDDEL +LRKL H LP HF LG+
Sbjct: 377 DWWMRKPLPIDADLLPEEVPGFRPPLRLSPPNTRPNLTDDELKYLRKLTHPLPFHFALGK 436

Query: 183 NRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           NR LQGLAAAILKLWEKSLIAKIA+KWG+ NT+NEQMA ELK
Sbjct: 437 NRNLQGLAAAILKLWEKSLIAKIAIKWGIQNTDNEQMAYELK 478

[Close]
BLAST of Lsi03G004350 vs. TAIR10
Match: AT5G16180.1 (AT5G16180.1 ortholog of maize chloroplast splicing factor CRS1)

HSP 1 Score: 188.3 bits (477), Expect = 5.3e-48
Identity = 88/124 (70.97%), Postives = 102/124 (82.26%), Query Frame = 1 

Query: 100 MSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLT 159
           +S SLYERE DRLLD LGPR++DWWM +P PVDAD+LPEVV GYM P RRCPP T  KLT
Sbjct: 303 ISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLT 362

Query: 160 DDELLHLRKLAHSLPTHFVLGRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMA 219
           D+EL +LR +A  LP HFVLGRN  LQGLA+AI+KLWEK +IAKIA+KWG  NTNNE+MA
Sbjct: 363 DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMA 422

Query: 220 CELK 224
            EL+
Sbjct: 423 DELR 426

[Close]
BLAST of Lsi03G004350 vs. TAIR10
Match: AT3G01370.1 (AT3G01370.1 CRM family member 2)

HSP 1 Score: 164.5 bits (415), Expect = 8.2e-41
Identity = 98/228 (42.98%), Postives = 120/228 (52.63%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPV-------DLKHSTKMQVDSSYCSKTSLLKPNPIK 62
           + KTGG+V+W   + +++YRG NY         DL H       S         +   I 
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQSIA 289

Query: 63  LETDTDFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDD 122
            E+       +  +  L QG+   D                FQ         E DRLL+ 
Sbjct: 290 -ESSAPSITNKMVKPMLTQGVGSPDKV-------------RFQLPGEVQLVEEADRLLEG 349

Query: 123 LGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPT 182
           LGPRF DWW + PLPVD D+LP VVP Y  PFR  P    PKLTDDE+  +R+L   LP 
Sbjct: 350 LGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPC 409

Query: 183 HFVLGRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           HF LGRNR LQGLA AI+KLWEK  +AKIA+K GV NTN+E MA ELK
Sbjct: 410 HFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELK 443

[Close]
BLAST of Lsi03G004350 vs. TAIR10
Match: AT3G18390.1 (AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 147.9 bits (372), Expect = 7.9e-36
Identity = 92/223 (41.26%), Postives = 124/223 (55.61%), Query Frame = 1 

Query: 1   MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDT 60
           + + +TGGMV+W   + +VVYRG +Y      S +M        K +L  P+        
Sbjct: 305 IVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGP-----KETLFVPDVS------ 364

Query: 61  DFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRF 120
             S G+   +       DN           +++    + M+    E E + LLD LGPRF
Sbjct: 365 --SAGDEATNA-----KDNQSAPLVIKDPIIKNPIRKENMTEE--EVEFNSLLDSLGPRF 424

Query: 121 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLG 180
            +WW    LPVDAD+LP  +PGY  PFR  P      LT+ E+ +LRK+  +LP HF LG
Sbjct: 425 QEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALG 484

Query: 181 RNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           RNR  QGLAAAIL++WEKSLIAKIA+K G+ NTNN+ MA E+K
Sbjct: 485 RNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVK 507

[Close]
BLAST of Lsi03G004350 vs. TAIR10
Match: AT3G23070.1 (AT3G23070.1 CRM family member 3A)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-35
Identity = 86/221 (38.91%), Postives = 118/221 (53.39%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           + KTGG+V+W    ++ +YRG +Y +      K + +                 ET  + 
Sbjct: 285 EKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQRRE-----------------ETPPEA 344

Query: 63  SVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRFID 122
            +  H E+      +D      +            Q      YE E D LLDDLGPRF+D
Sbjct: 345 VIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPRFMD 404

Query: 123 WWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRN 182
           W    PLPVDAD+LP  +P Y PPFR  P      L   E   LR+LA S+P HF LGR+
Sbjct: 405 WPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRS 464

Query: 183 RKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           R+LQGLA A+++LWEKS++AKIA+K GV +T +E+MA +LK
Sbjct: 465 RQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLK 488

[Close]
BLAST of Lsi03G004350 vs. TAIR10
Match: AT4G29750.1 (AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-33
Identity = 86/224 (38.39%), Postives = 121/224 (54.02%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           + KTGG+V+W   +++V+YRG +Y +              C +T  +K N ++   +   
Sbjct: 308 EKKTGGLVIWRSGSSVVLYRGISYKLK-------------CVQT-FIKQNNLEANPEIHR 367

Query: 63  SVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQ---PMSGSLYERETDRLLDDLGPR 122
           SV                      +  +++  GN+    P        E + LLD++GPR
Sbjct: 368 SV---------------------EARDYVQEDGNYPKNVPKEQLSELCELNDLLDEVGPR 427

Query: 123 FIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVL 182
           F DW    P PVDAD+LP  V GY  PFR  P    P L++ E+  +R+LA + P HF L
Sbjct: 428 FHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHFAL 487

Query: 183 GRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           GR+R+LQGLA A++KLW KS IAKIA+K GV NT NE+MA ELK
Sbjct: 488 GRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELK 496

[Close]
BLAST of Lsi03G004350 vs. NCBI nr
Match: gi|659081301|ref|XP_008441260.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis melo])

HSP 1 Score: 380.6 bits (976), Expect = 2.1e-102
Identity = 184/223 (82.51%), Postives = 197/223 (88.34%), Query Frame = 1 

Query: 1   MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDT 60
           + +MKTGGMVVW KKNALVVYRGCNYP++LK STKMQVDSS CSKT +L+ NP+K+ETDT
Sbjct: 249 IVEMKTGGMVVWSKKNALVVYRGCNYPLNLKPSTKMQVDSS-CSKTQVLQQNPVKVETDT 308

Query: 61  DFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRF 120
             S+  HYESGL+Q  ND+DGEWEEASS FL  HGN QP+SGSLYERETDRLLDDLGPRF
Sbjct: 309 HSSLSGHYESGLDQSRNDDDGEWEEASSFFLMRHGNLQPLSGSLYERETDRLLDDLGPRF 368

Query: 121 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLG 180
           IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLG
Sbjct: 369 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRKLAHSLPTHFVLG 428

Query: 181 RNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK 224
           RNR LQGLA AILKLWEKS+IAKIALKWGVPNTNNEQMA ELK
Sbjct: 429 RNRGLQGLAGAILKLWEKSMIAKIALKWGVPNTNNEQMAFELK 470

[Close]
BLAST of Lsi03G004350 vs. NCBI nr
Match: gi|778673091|ref|XP_011649926.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 1.8e-98
Identity = 183/242 (75.62%), Postives = 198/242 (81.82%), Query Frame = 1 

Query: 1   MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDT 60
           + +MKTGGMVVW KKNALVVYRGCNYP++LKHSTK QV  S          NP+K+ETDT
Sbjct: 251 IVEMKTGGMVVWSKKNALVVYRGCNYPLNLKHSTKKQVHIS--------PQNPVKVETDT 310

Query: 61  DFSVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRF 120
            FS+  HYESGLN+ +NDNDGEWEEASS FL  H N QP+SGSLYERETDRLLDDLGPRF
Sbjct: 311 HFSLSGHYESGLNRSINDNDGEWEEASSFFLIRHENLQPLSGSLYERETDRLLDDLGPRF 370

Query: 121 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLG 180
           IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPP T   LTD  L HLRKLAHSLPTHFVLG
Sbjct: 371 IDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQHLRKLAHSLPTHFVLG 430

Query: 181 RNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK-----ASFLEIIFVLKL 238
           RNRKLQGLAA+ILKLWEKS+IAKIALKWGVPNT+NEQMA ELK        L   FV+ L
Sbjct: 431 RNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELKNLTGGTLLLRNKFVIIL 484

[Close]
BLAST of Lsi03G004350 vs. NCBI nr
Match: gi|694352260|ref|XP_009357794.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 262.7 bits (670), Expect = 6.3e-67
Identity = 139/240 (57.92%), Postives = 172/240 (71.67%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           +MKTGGMVVW  K+++V+YRGCNY +  K   K +  S+ C +TS      + LE  + +
Sbjct: 281 EMKTGGMVVWRNKDSIVIYRGCNYQLTSKFFPKRRPRSAGCQETSSSDLIQLDLEKSSIY 340

Query: 63  SVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRFID 122
              E +ES +++ LN  + + +  +  FL  + + QP S SLYE+E DRLLD LGPRFID
Sbjct: 341 Q-SETFESAVDEKLNKKNDKGDP-TQIFLETNVSCQPTSSSLYEKEADRLLDGLGPRFID 400

Query: 123 WWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRN 182
           WWMHKPLPVDAD+LPEVVPG+  P RRCPP T  +LTDDEL +LRK A SLPTHFV+GRN
Sbjct: 401 WWMHKPLPVDADLLPEVVPGFKAPIRRCPPNTRSRLTDDELTNLRKSARSLPTHFVVGRN 460

Query: 183 RKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK-----ASFLEIIFVLKLYK 238
           RKLQGLAAAILKLWEKS IAKIA+K+GVPNTNNEQMA ELK        L   F++ LY+
Sbjct: 461 RKLQGLAAAILKLWEKSQIAKIAVKFGVPNTNNEQMAYELKCLTGGVLLLRNKFIILLYR 518

[Close]
BLAST of Lsi03G004350 vs. NCBI nr
Match: gi|694352271|ref|XP_009357796.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 262.7 bits (670), Expect = 6.3e-67
Identity = 139/240 (57.92%), Postives = 172/240 (71.67%), Query Frame = 1 

Query: 3   QMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDTDF 62
           +MKTGGMVVW  K+++V+YRGCNY +  K   K +  S+ C +TS      + LE  + +
Sbjct: 281 EMKTGGMVVWRNKDSIVIYRGCNYQLTSKFFPKRRPRSAGCQETSSSDLIQLDLEKSSIY 340

Query: 63  SVGEHYESGLNQGLNDNDGEWEEASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPRFID 122
              E +ES +++ LN  + + +  +  FL  + + QP S SLYE+E DRLLD LGPRFID
Sbjct: 341 Q-SETFESAVDEKLNKKNDKGDP-TQIFLETNVSCQPTSSSLYEKEADRLLDGLGPRFID 400

Query: 123 WWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVLGRN 182
           WWMHKPLPVDAD+LPEVVPG+  P RRCPP T  +LTDDEL +LRK A SLPTHFV+GRN
Sbjct: 401 WWMHKPLPVDADLLPEVVPGFKAPIRRCPPNTRSRLTDDELTNLRKSARSLPTHFVVGRN 460

Query: 183 RKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELK-----ASFLEIIFVLKLYK 238
           RKLQGLAAAILKLWEKS IAKIA+K+GVPNTNNEQMA ELK        L   F++ LY+
Sbjct: 461 RKLQGLAAAILKLWEKSQIAKIAVKFGVPNTNNEQMAYELKCLTGGVLLLRNKFIILLYR 518

[Close]
BLAST of Lsi03G004350 vs. NCBI nr
Match: gi|595967702|ref|XP_007217313.1| (hypothetical protein PRUPE_ppa016241mg [Prunus persica])

HSP 1 Score: 260.4 bits (664), Expect = 3.1e-66
Identity = 141/240 (58.75%), Postives = 171/240 (71.25%), Query Frame = 1 

Query: 1   MTQMKTGGMVVWCKKNALVVYRGCNYPVDLKHSTKMQVDSSYCSKTSLLKPNPIKLETDT 60
           + + KTGGMVVW KK+ LV+YRGCNY    K   KM+  S+   +T         LE ++
Sbjct: 301 IVETKTGGMVVWGKKDTLVIYRGCNYQSSSKFFPKMRPCSADRQETLSSDHMQPDLEENS 360

Query: 61  DFSVGEHYESGLNQGLNDNDGEWE-EASSSFLRHHGNFQPMSGSLYERETDRLLDDLGPR 120
            +   + +ES +++ ++  D E +   S +F     + QP S SLYE+E DRLLD LGPR
Sbjct: 361 SYQY-KSFESPVDEKMSRKDAEEDCIQSGTFQETSMSCQPTSRSLYEKEADRLLDGLGPR 420

Query: 121 FIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPLTIPKLTDDELLHLRKLAHSLPTHFVL 180
           FIDWWMHKPLPVDAD+LPEVVPG+  P RRCPP T  KLTDDEL  LRK A SLPTHFVL
Sbjct: 421 FIDWWMHKPLPVDADLLPEVVPGFKAPIRRCPPHTRSKLTDDELTFLRKFARSLPTHFVL 480

Query: 181 GRNRKLQGLAAAILKLWEKSLIAKIALKWGVPNTNNEQMACELKASFLEI--IFVLKLYK 238
           GRNRKLQGLAAAILKLWEKSLIAKIA+K+GVPNTNNEQMA EL+A  L +   F++ LY+
Sbjct: 481 GRNRKLQGLAAAILKLWEKSLIAKIAVKFGVPNTNNEQMAYELRARVLILRNKFIILLYR 539

The following BLAST results are available for this feature:
BLAST of Lsi03G004350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CRS1_ORYSJ2.8e-5152.04Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza... [more]
CRS1_ARATH9.4e-4770.97Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabi... [more]
CRS1_MAIZE1.2e-4670.63Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea m... [more]
CFM2_ARATH1.5e-3942.98CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2... [more]
CFM3_ORYSJ4.4e-3642.08CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s... [more]
BLAST of Lsi03G004350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSY1_CUCSA1.3e-9875.62Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404830 PE=4 SV=1[more]
M5WXK2_PRUPE2.2e-6658.75Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016241mg PE=4 SV=1[more]
W9S0T5_9ROSA3.7e-6661.78Chloroplastic group IIA intron splicing facilitator CRS1 OS=Morus notabilis GN=L... [more]
G7IHY0_MEDTR2.6e-6459.64Group IIA intron splicing facilitator CRS1 OS=Medicago truncatula GN=MTR_2g10066... [more]
A0A061EGM4_THECC1.2e-6157.66Chloroplast splicing factor CRS1, putative isoform 3 OS=Theobroma cacao GN=TCM_0... [more]
BLAST of Lsi03G004350 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16180.15.3e-4870.97 ortholog of maize chloroplast splicing factor CRS1[more]
AT3G01370.18.2e-4142.98 CRM family member 2[more]
AT3G18390.17.9e-3641.26 CRS1 / YhbY (CRM) domain-containing protein[more]
AT3G23070.11.0e-3538.91 CRM family member 3A[more]
AT4G29750.12.2e-3338.39 CRS1 / YhbY (CRM) domain-containing protein[more]
BLAST of Lsi03G004350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081301|ref|XP_008441260.1|2.1e-10282.51PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|778673091|ref|XP_011649926.1|1.8e-9875.62PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|694352260|ref|XP_009357794.1|6.3e-6757.92PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|694352271|ref|XP_009357796.1|6.3e-6757.92PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|595967702|ref|XP_007217313.1|3.1e-6658.75hypothetical protein PRUPE_ppa016241mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004350.1Lsi03G004350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainGENE3DG3DSA:3.30.110.60coord: 157..224
score: 8.5
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 158..224
score: 1.3
IPR001890RNA-binding, CRM domainSMARTSM01103CRS1_YhbY_2coord: 158..237
score: 7.
IPR001890RNA-binding, CRM domainPROFILEPS51295CRMcoord: 156..238
score: 12
IPR001890RNA-binding, CRM domainunknownSSF75471YhbY-likecoord: 158..223
score: 1.24
NoneNo IPR availablePANTHERPTHR31846FAMILY NOT NAMEDcoord: 4..223
score: 4.6E
NoneNo IPR availablePANTHERPTHR31846:SF10CHLOROPLASTIC GROUP IIA INTRON SPLICING FACILITATOR CRS1, CHLOROPLASTICcoord: 4..223
score: 4.6E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G004350Cucumber (Chinese Long) v3cuclsiB127
Lsi03G004350Watermelon (97103) v2lsiwmbB224
Lsi03G004350Wax gourdlsiwgoB322
Lsi03G004350Cucumber (Gy14) v1cgylsiB098
Lsi03G004350Cucurbita maxima (Rimu)cmalsiB276
Lsi03G004350Cucurbita maxima (Rimu)cmalsiB656
Lsi03G004350Cucurbita moschata (Rifu)cmolsiB265
Lsi03G004350Cucurbita moschata (Rifu)cmolsiB645
Lsi03G004350Cucurbita pepo (Zucchini)cpelsiB143
Lsi03G004350Cucurbita pepo (Zucchini)cpelsiB339
Lsi03G004350Wild cucumber (PI 183967)cpilsiB113
Lsi03G004350Cucumber (Chinese Long) v2culsiB115
Lsi03G004350Melon (DHL92) v3.5.1lsimeB259
Lsi03G004350Watermelon (Charleston Gray)lsiwcgB227
Lsi03G004350Watermelon (97103) v1lsiwmB275
Lsi03G004350Cucumber (Gy14) v2cgyblsiB102
Lsi03G004350Melon (DHL92) v3.6.1lsimedB272
Lsi03G004350Silver-seed gourdcarlsiB017
Lsi03G004350Silver-seed gourdcarlsiB986