Lsi03G004340 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G004340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChloroplastic group IIA intron splicing facilitator CRS1
Locationchr03 : 4916008 .. 4918241 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTATGGTGTTTCGTGTCCCTTGCTATGATTTAGTGTGTTATGTATGCATGGGGTGATGTTATTGCGTTAAATACCTTTTACTGGTTCAGAGTCTCACAGGAGGAACATTGCTGCTGCGCAACAAATTTCTCATTATCCTTTACCGAGGCAATGACTTCCTACCTGTTGGAGTTGCCAATTCAATAATTCAAAGAGAAATGGAGCTCCAAAGATGGCAACTTCACGAGGAAAATTCACGGCTGAAAGCCAGTGCATTTTTCTGTTTTAACACTGGGAACATGGAAGAGAGAGCCAAGGCTGGAACTCTATCAGATTTTAAGGATATCACAGTGGAGTTTGAAGATTTGACAACTGGAAGCACAGAATCAAAACTTCAAGCAGATGCTGTAAAGGGAAAAATCATTAGGGAGCTGAGGATGCAAGAGCGAAGACTTAGCATTGTAGGGTTAACTTTTATGTGCTTATATCTGAATGACCATCCCTGTTAAGCTGTTATCACGACCTGCTGATGTTTTTCTCATATTGGGATTTTGCAGCTTAACTTTAAGGTAGAGAAGTCAACAAAGGAGTTGACAAAGTTGAATGCATCATGGAGGCACGTTGAGCCAAATGAAGACCAGGAACTGATTACAAATGAGGAGAGAATATGTTTTAGGAAGATGGGTTTGAAGATGGATAGCTGCTTAACACTCGGTATCTAGTTCAAATCCGATCCCATCCATTAAGTTGGACTTTTGTTAGGTTGCATTGCCTAGTACCTGGGCACCCTTAGAATTCTATTGAAAACATATAAAGTTGCTCCAATTTACTTCGATGAAAACATAAGATGCCCTTTTGTTTTGCACTCATGTATCATCATGCATAACTTGGATTAACCTTATGAAATGAAAAAAAAAAAAAAAAAATTAAATAGAAGGGTTAATTTGTGGCAACCTGTGCAATAAAAGGTAAATAGTATAGCATTACTTTCTTCCCCATGTTCTATTCTTTAGTTTTGGTTTTTTGGTGACTTTAGGTAGGCGTGGCATCTTTGATGGTGTTATTGAAGGCTTGCATCAACACTGGAAACACAGAGAGGTAGTAAAGGTGATTACCATGCAGAGAGCTTTTAATCAGGTTATTTATACTGCAAAATCGCTTGAAGCAGAAAGTGGTGGGATTTTAGTATCCGTGGACAAACTAAAAGAAGGCTATGCCATAATTATTTTCCGTGGAAAGAACTATAAACGACCTCTACATTCAGTGTCCAAGAATCTCTTGACTAAAAGAAAAGCATTAAGTAGGTCCTTGGAGATGCAGAGAATTGGAGTAAGCGGAACTTCTGTTCCTTGTTCTGTTAATATAAATAATCCAGTTGTGTCAATATGGCTGCTTCGATTCTGCTAATTTTCCTATTTTCATTGCAGTCACTGAAGTTCTTTGCTAATCAGAGACAGCAAAAAATTTCTGAATTACAACTCAAACTGGTGAGCAATGAGTCCGAGAGGTGTCATATATAAACGCTCCAACCCTATTCTCGCATATGCAATCTGTATTATCTGATATTTCTCTTTGTTAATAAGATTGTTCTCTCCCTCTACCTGTGGATGTAGCTAACACACTGTTAGTGAACTATGTAAATCTCTGTGTCGATCTTTATTATTTACGTTTTTTCACTTTTTTTATTTATTGATTTCACAAACACAGGAGAACGTGCATGATAGTGAGGAGTAAATTAATTAGAACTAGAGTACATAGCTTGTCGATAAAGGCGCACTTCTCCACCTCTACGTTTGAAACATGGGCGAATTGGGTATGCTAAAGTGATCTAAATAACTAGCTGTCTCCCCAAGCTACTATTTTTTTTTTTCTACATTTATTTGTTTTTATTGGTATGTTAGGTCTATGAAGAACACAGCAGAGCTCCATGTGAATAAAGTTTGTTAGGCAGAGGCCCCATATTCAATAATGGATGCTTAAAAACTGTGAAGACAAGAAAGAAGCTAAGATGGAGATGAAGAAATTCTTTACAAGTTGTGGAGCATTAGTGGATCTGTCTACTTTGGTTCTGGAATGGATACTGTAAGTGAAAAGATAGAGAGAAAATTTTCTCTTCCATTTATTGACTTGACGCAAAATCGTATTAGAGCTAATTTTCGTTTAACCAACGTTCAACAATCTCATTCTTTTATATCTATAGAACATATACATAAATCAGTGCTCTCTAAATCTAATAAAAATGTTTCAACTC

mRNA sequence

ATGCGTATGAGTCTCACAGGAGGAACATTGCTGCTGCGCAACAAATTTCTCATTATCCTTTACCGAGGCAATGACTTCCTACCTGTTGGAGTTGCCAATTCAATAATTCAAAGAGAAATGGAGCTCCAAAGATGGCAACTTCACGAGGAAAATTCACGGCTGAAAGCCAGTGCATTTTTCTGTTTTAACACTGGGAACATGGAAGAGAGAGCCAAGGCTGGAACTCTATCAGATTTTAAGGATATCACAGTGGAGTTTGAAGATTTGACAACTGGAAGCACAGAATCAAAACTTCAAGCAGATGCTGTAAAGGGAAAAATCATTAGGGAGCTGAGGATGCAAGAGCGAAGACTTAGCATTCTTAACTTTAAGGTAGAGAAGTCAACAAAGGAGTTGACAAAGTTGAATGCATCATGGAGGCACGTTGAGCCAAATGAAGACCAGGAACTGATTACAAATGAGGAGAGAATATGTTTTAGGAAGATGGGTTTGAAGATGGATAGCTGCTTAACACTCGGTAGGCGTGGCATCTTTGATGGTGTTATTGAAGGCTTGCATCAACACTGGAAACACAGAGAGGTAGTAAAGGTGATTACCATGCAGAGAGCTTTTAATCAGGTTATTTATACTGCAAAATCGCTTGAAGCAGAAAGTGGTGGGATTTTAGTATCCGTGGACAAACTAAAAGAAGGCTATGCCATAATTATTTTCCGTGGAAAGAACTATAAACGACCTCTACATTCAGTGTCCAAGAATCTCTTGACTAAAAGAAAAGCATTAAGTAGGTCCTTGGAGATGCAGAGAATTGGAGTAAGCGGAACTTCTGTTCCTTGTTCTGTCTATGAAGAACACAGCAGAGCTCCATGTGAATAAAGTTTGTTAGGCAGAGGCCCCATATTCAATAATGGATGCTTAAAAACTGTGAAGACAAGAAAGAAGCTAAGATGGAGATGAAGAAATTCTTTACAAGTTGTGGAGCATTAGTGGATCTGTCTACTTTGGTTCTGGAATGGATACTGTAAGTGAAAAGATAGAGAGAAAATTTTCTCTTCCATTTATTGACTTGACGCAAAATCGTATTAGAGCTAATTTTCGTTTAACCAACGTTCAACAATCTCATTCTTTTATATCTATAGAACATATACATAAATCAGTGCTCTCTAAATCTAATAAAAATGTTTCAACTC

Coding sequence (CDS)

ATGCGTATGAGTCTCACAGGAGGAACATTGCTGCTGCGCAACAAATTTCTCATTATCCTTTACCGAGGCAATGACTTCCTACCTGTTGGAGTTGCCAATTCAATAATTCAAAGAGAAATGGAGCTCCAAAGATGGCAACTTCACGAGGAAAATTCACGGCTGAAAGCCAGTGCATTTTTCTGTTTTAACACTGGGAACATGGAAGAGAGAGCCAAGGCTGGAACTCTATCAGATTTTAAGGATATCACAGTGGAGTTTGAAGATTTGACAACTGGAAGCACAGAATCAAAACTTCAAGCAGATGCTGTAAAGGGAAAAATCATTAGGGAGCTGAGGATGCAAGAGCGAAGACTTAGCATTCTTAACTTTAAGGTAGAGAAGTCAACAAAGGAGTTGACAAAGTTGAATGCATCATGGAGGCACGTTGAGCCAAATGAAGACCAGGAACTGATTACAAATGAGGAGAGAATATGTTTTAGGAAGATGGGTTTGAAGATGGATAGCTGCTTAACACTCGGTAGGCGTGGCATCTTTGATGGTGTTATTGAAGGCTTGCATCAACACTGGAAACACAGAGAGGTAGTAAAGGTGATTACCATGCAGAGAGCTTTTAATCAGGTTATTTATACTGCAAAATCGCTTGAAGCAGAAAGTGGTGGGATTTTAGTATCCGTGGACAAACTAAAAGAAGGCTATGCCATAATTATTTTCCGTGGAAAGAACTATAAACGACCTCTACATTCAGTGTCCAAGAATCTCTTGACTAAAAGAAAAGCATTAAGTAGGTCCTTGGAGATGCAGAGAATTGGAGTAAGCGGAACTTCTGTTCCTTGTTCTGTCTATGAAGAACACAGCAGAGCTCCATGTGAATAA

Protein sequence

MRMSLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIGVSGTSVPCSVYEEHSRAPCE
Homology
[Close]
BLAST of Lsi03G004340 vs. Swiss-Prot
Match: CRS1_ARATH (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-71
Identity = 143/269 (53.16%), Postives = 196/269 (72.86%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFF--CF 64
           LTGG L+LRNK+LI+LYRG DFL   VA+ +  RE  L R+Q  EE  R           
Sbjct: 428 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 487

Query: 65  NTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILN 124
           N   ++E  K+GTL +F+++  +F ++   +    L+ +A K ++ +EL+ QE +LSIL 
Sbjct: 488 NGKQLKETNKSGTLLEFQELQRKFGEMDPRN----LETEAEKARLEKELKSQEHKLSILK 547

Query: 125 FKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVI 184
            K+EKS  EL KLN+ W+  E ++D E++TNEER C R++GLKM+S L LGRRG+F GV+
Sbjct: 548 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVM 607

Query: 185 EGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNY 244
           EGLHQHWKHREV KVITMQ+ F++V+YTAK+LE ES G+L+S++KLKEG+AI+I+RGKNY
Sbjct: 608 EGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY 667

Query: 245 KRPLHS-VSKNLLTKRKALSRSLEMQRIG 271
           KRP    +++NLLTKRKAL RS+ MQR+G
Sbjct: 668 KRPSSKLMAQNLLTKRKALQRSVVMQRLG 692

[Close]
BLAST of Lsi03G004340 vs. Swiss-Prot
Match: CRS1_MAIZE (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.6e-67
Identity = 133/266 (50.00%), Postives = 186/266 (69.92%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGGT++LRNK  IILYRG DFLP GVA ++IQRE ++   Q+ EE +RLKA        
Sbjct: 419 LTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQM-V 478

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
           G + E +  GT  +++    +F    T ++ + ++ +A K ++ +EL+  E +LS+LN K
Sbjct: 479 GELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLSVLNKK 538

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +E+S + L KL++SW   E + D+E +T EE+I FR++G KMD  + LGRRGIFDGVIE 
Sbjct: 539 IERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEE 598

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           +HQHWKH+EVVKVIT Q    Q++Y A  LE E+GGIL++V+KL   +AII++RGKNY+R
Sbjct: 599 IHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRR 658

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           P  S   NLLTKR+AL RS+E+QR G
Sbjct: 659 PAKSSFSNLLTKREALRRSIEVQRRG 683

[Close]
BLAST of Lsi03G004340 vs. Swiss-Prot
Match: CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 131/266 (49.25%), Postives = 183/266 (68.80%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGGT++LRNK  II+YRG DFLP GVA S+I+RE ++   Q  EE +RLK +       
Sbjct: 421 LTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIV 480

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
           G   ER+  GT  +++D        TT     ++Q +A K ++ +EL+ QE RLS+L  K
Sbjct: 481 GLSSERSYVGTFREYQDFHDSHARRTT-ENNFRIQLEAKKHRLEKELKDQEWRLSMLTKK 540

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +E+S + L KL++SW   + + D+EL+T EER  FRK+GLKMD  + LGRRG+F+GVIE 
Sbjct: 541 IERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEE 600

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           +HQHWKH+EVVKVIT Q   +Q+ YT+  LE E+GG L+++++    +AII++RGKNY+R
Sbjct: 601 IHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRR 660

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           P  S   NLLTKR+AL RS+E+QR G
Sbjct: 661 PTKSAPSNLLTKREALQRSIEVQRRG 685

[Close]
BLAST of Lsi03G004340 vs. Swiss-Prot
Match: CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CFM3A PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-52
Identity = 119/268 (44.40%), Postives = 175/268 (65.30%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLK-ASAFFCFN 64
           LTGG +L RNK  ++ YRG +FL   VA++++++E  ++  Q  EE +RL+ +SA    +
Sbjct: 490 LTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPS 549

Query: 65  TGNMEERAKAGTLSDFKDITVEFE---DLTTGSTESKLQADAVKGKIIRELRMQERRLSI 124
           T    +   AGTL +  D T ++    D    S E K + + ++ + +  +R  ER+L+ 
Sbjct: 550 TEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENL--VRKLERKLAF 609

Query: 125 LNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDG 184
              K+ K+ + L K+    +  E  ED E IT+EER  FRK+GLKM + L LGRRG+FDG
Sbjct: 610 AERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDG 669

Query: 185 VIEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGK 244
            +E +H HWK+RE+VK+I   + F+ V   A +LEAESGGILVS+DK+ +GYAII++RG+
Sbjct: 670 TVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQ 729

Query: 245 NYKRPLHSVSKNLLTKRKALSRSLEMQR 269
           +YKRP     KNLLTKRKAL+RS+E+QR
Sbjct: 730 DYKRPTMLRPKNLLTKRKALARSIELQR 755

[Close]
BLAST of Lsi03G004340 vs. Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.5e-51
Identity = 113/264 (42.80%), Postives = 165/264 (62.50%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGG +L RN   ++ YRG DFL   +A  +++RE   +  Q  EE +RL A++ F   T
Sbjct: 447 LTGGVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQ-DEEQARLNAASSFSSRT 506

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
               E   AGTL +  +   ++ +    + E+K+       +    +R  E +L +   K
Sbjct: 507 EAPVEPTVAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADLVRKLEWKLQLAQKK 566

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +EK+ + L K+  + +  E  +  E IT+EER  FRK+GL+M + L LGRRG+FDG IE 
Sbjct: 567 IEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIEN 626

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           +H HWK+RE+VK++   ++F  V   A SLEAESGGILVSVDK+ +GYAI++FRGK+Y R
Sbjct: 627 MHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGYAIVVFRGKDYAR 686

Query: 245 PLHSVSKNLLTKRKALSRSLEMQR 269
           P     +NLL+KRKAL+RS+E+QR
Sbjct: 687 PSKLRPRNLLSKRKALARSIEIQR 709

[Close]
BLAST of Lsi03G004340 vs. TrEMBL
Match: A0A0A0LSY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404830 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 1.2e-132
Identity = 245/267 (91.76%), Postives = 256/267 (95.88%), Query Frame = 1 

Query: 4   SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFN 63
           +LTGGTLLLRNKF+IILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+
Sbjct: 466 NLTGGTLLLRNKFVIILYRGNDFLPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFD 525

Query: 64  TGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNF 123
           T NMEER KAGTLSDFKDITV +EDL+TGSTES+LQA+A KGKIIR LRMQERRL ILNF
Sbjct: 526 TENMEERGKAGTLSDFKDITVGYEDLSTGSTESRLQAEAEKGKIIRGLRMQERRLKILNF 585

Query: 124 KVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIE 183
           KVEKSTKELTKLNASWR VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIE
Sbjct: 586 KVEKSTKELTKLNASWRRVEPDADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIE 645

Query: 184 GLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYK 243
           GLHQHWKHREVVKVITMQRAFNQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYK
Sbjct: 646 GLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYK 705

Query: 244 RPLHSVSKNLLTKRKALSRSLEMQRIG 271
           RPLHSVSKNLLTKRKALSRSLEMQRIG
Sbjct: 706 RPLHSVSKNLLTKRKALSRSLEMQRIG 732

[Close]
BLAST of Lsi03G004340 vs. TrEMBL
Match: W9S0T5_9ROSA (Chloroplastic group IIA intron splicing facilitator CRS1 OS=Morus notabilis GN=L484_027056 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 5.1e-86
Identity = 176/283 (62.19%), Postives = 214/283 (75.62%), Query Frame = 1 

Query: 2   RMSLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFC 61
           R+ LTGG LLLRNKF+IILYRG DFLP  +A  I +RE EL+  QL+EE++RL  +    
Sbjct: 478 RICLTGGDLLLRNKFIIILYRGKDFLPDQIAELITKRETELEYCQLYEEHARLVVAEKVF 537

Query: 62  FNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSIL 121
                +++ + AGTLS+F DI +E+ D   G+ E KL  +A K ++  ELR QER+L IL
Sbjct: 538 VADEPLKKTSPAGTLSEFHDIQIEYGDSNKGNIEVKLPFEAEKERLESELRKQERKLLIL 597

Query: 122 NFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGV 181
           N K++KSTKEL KLN +W+  E + DQE++T EER CFRK+GLKM S L LGRRGIFDGV
Sbjct: 598 NSKIKKSTKELLKLNTAWKPSERDGDQEMLTEEERECFRKIGLKMRSVLVLGRRGIFDGV 657

Query: 182 IEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKN 241
           IEGL QHWKHREV KVITMQR F QV+YTA SLEAESGG+LVSV+KLKEG+AIII+RGKN
Sbjct: 658 IEGLRQHWKHREVAKVITMQRYFWQVMYTATSLEAESGGLLVSVEKLKEGHAIIIYRGKN 717

Query: 242 YKRPLHSVSKNLLTKRKALSRSLEMQRIGVSGTSVPCSVYEEH 285
           Y+RPL  +S NLLTKRKALSRSLEMQRIG    S+    Y+ H
Sbjct: 718 YRRPLKLISVNLLTKRKALSRSLEMQRIG----SLKFFAYQRH 756

[Close]
BLAST of Lsi03G004340 vs. TrEMBL
Match: V4SY32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013368mg PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.5e-85
Identity = 169/266 (63.53%), Postives = 210/266 (78.95%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGG LLLRNKFLIILYRG DFLP GV N I++RE ELQ  Q HEE +RLKA   F    
Sbjct: 480 LTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPD 539

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
             +E+ +KAGTLS+F++I  +F DL  G+ E +LQ +A    + RELR QER+L ILN K
Sbjct: 540 EPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLFILNIK 599

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +EKS KEL++LN++W+  E + D E+IT EER C  K+G+K++S L LGRRG+FDGVIEG
Sbjct: 600 IEKSAKELSRLNSAWKPREQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEG 659

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           LHQHWK+REV +VIT Q+ F QVIYTAKSL AESGGIL+SVDKLKEG+AIII+RGKNY+R
Sbjct: 660 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 719

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           PL  +++NLL+KR+AL RSLEMQR+G
Sbjct: 720 PLKLMTQNLLSKRQALRRSLEMQRLG 745

[Close]
BLAST of Lsi03G004340 vs. TrEMBL
Match: A0A0B0PGE0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03195 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 3.3e-85
Identity = 166/266 (62.41%), Postives = 210/266 (78.95%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGG LLLRNKFLII YRG DFLP GVANS+++REM L+R QL EE +R+K +  F    
Sbjct: 439 LTGGVLLLRNKFLIIFYRGKDFLPQGVANSVMEREMALRRCQLIEEGARVKVAETFQVAN 498

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
            ++ + +  GTL++F+DI  ++  L   + E ++Q +A K  + RELR QER+L+ILN K
Sbjct: 499 ESLAKTSTVGTLAEFQDIQTKYGVLEKENNELEIQIEAQKENLERELRNQERKLAILNGK 558

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +EKS K+L KLN+SW+  EP+ D E IT EER C RK+GLK+ SCL LGRRG+F+GVIEG
Sbjct: 559 IEKSAKKLAKLNSSWQTAEPDLDLETITEEERECLRKIGLKLSSCLVLGRRGVFNGVIEG 618

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           +HQHWKHREVVKVITMQRAF +VIYTAK L AESGGILVSV+KLKEG+AIII+RGKNY+R
Sbjct: 619 VHQHWKHREVVKVITMQRAFLRVIYTAKMLVAESGGILVSVEKLKEGHAIIIYRGKNYRR 678

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           P   ++ +LLTKR+AL RS+E+QRIG
Sbjct: 679 PSKLMTDHLLTKREALQRSIELQRIG 704

[Close]
BLAST of Lsi03G004340 vs. TrEMBL
Match: A0A0D2PBD7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G182400 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.8e-84
Identity = 165/266 (62.03%), Postives = 209/266 (78.57%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGG LLLRNKFLII YRG DFLP GVANS+++REM L+R QL EE++R+K +  F    
Sbjct: 436 LTGGVLLLRNKFLIIFYRGKDFLPQGVANSVMEREMALRRCQLIEEDARVKVAETFQVAN 495

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
             + + +  GTL++F+DI  ++  L   + E ++Q +A K  + RELR QER+L+ILN K
Sbjct: 496 EPLAKTSTVGTLAEFQDIQTKYGVLEKENNELEIQIEAQKENLERELRNQERKLAILNGK 555

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +EKS  +L KLN+SW+  EP+ D E IT EER C RK+GLK+ SCL LGRRG+F+GVIEG
Sbjct: 556 IEKSATKLAKLNSSWQTAEPDLDLETITEEERECLRKIGLKLSSCLFLGRRGVFNGVIEG 615

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           +HQHWKHREVVKVITMQRAF +VIYTAK L AESGGILVSV+KLKEG+AIII+RGKNY+R
Sbjct: 616 VHQHWKHREVVKVITMQRAFLRVIYTAKMLVAESGGILVSVEKLKEGHAIIIYRGKNYRR 675

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           P   ++ +LLTKR+AL RS+E+QRIG
Sbjct: 676 PSKLMTDHLLTKREALQRSIELQRIG 701

[Close]
BLAST of Lsi03G004340 vs. TAIR10
Match: AT5G16180.1 (AT5G16180.1 ortholog of maize chloroplast splicing factor CRS1)

HSP 1 Score: 271.6 bits (693), Expect = 5.8e-73
Identity = 143/269 (53.16%), Postives = 196/269 (72.86%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFF--CF 64
           LTGG L+LRNK+LI+LYRG DFL   VA+ +  RE  L R+Q  EE  R           
Sbjct: 428 LTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVT 487

Query: 65  NTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILN 124
           N   ++E  K+GTL +F+++  +F ++   +    L+ +A K ++ +EL+ QE +LSIL 
Sbjct: 488 NGKQLKETNKSGTLLEFQELQRKFGEMDPRN----LETEAEKARLEKELKSQEHKLSILK 547

Query: 125 FKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVI 184
            K+EKS  EL KLN+ W+  E ++D E++TNEER C R++GLKM+S L LGRRG+F GV+
Sbjct: 548 SKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVM 607

Query: 185 EGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNY 244
           EGLHQHWKHREV KVITMQ+ F++V+YTAK+LE ES G+L+S++KLKEG+AI+I+RGKNY
Sbjct: 608 EGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNY 667

Query: 245 KRPLHS-VSKNLLTKRKALSRSLEMQRIG 271
           KRP    +++NLLTKRKAL RS+ MQR+G
Sbjct: 668 KRPSSKLMAQNLLTKRKALQRSVVMQRLG 692

[Close]
BLAST of Lsi03G004340 vs. TAIR10
Match: AT3G23070.1 (AT3G23070.1 CRM family member 3A)

HSP 1 Score: 208.4 bits (529), Expect = 6.0e-54
Identity = 119/268 (44.40%), Postives = 175/268 (65.30%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLK-ASAFFCFN 64
           LTGG +L RNK  ++ YRG +FL   VA++++++E  ++  Q  EE +RL+ +SA    +
Sbjct: 490 LTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPS 549

Query: 65  TGNMEERAKAGTLSDFKDITVEFE---DLTTGSTESKLQADAVKGKIIRELRMQERRLSI 124
           T    +   AGTL +  D T ++    D    S E K + + ++ + +  +R  ER+L+ 
Sbjct: 550 TEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENL--VRKLERKLAF 609

Query: 125 LNFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDG 184
              K+ K+ + L K+    +  E  ED E IT+EER  FRK+GLKM + L LGRRG+FDG
Sbjct: 610 AERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDG 669

Query: 185 VIEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGK 244
            +E +H HWK+RE+VK+I   + F+ V   A +LEAESGGILVS+DK+ +GYAII++RG+
Sbjct: 670 TVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQ 729

Query: 245 NYKRPLHSVSKNLLTKRKALSRSLEMQR 269
           +YKRP     KNLLTKRKAL+RS+E+QR
Sbjct: 730 DYKRPTMLRPKNLLTKRKALARSIELQR 755

[Close]
BLAST of Lsi03G004340 vs. TAIR10
Match: AT3G18390.1 (AT3G18390.1 CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 202.6 bits (514), Expect = 3.3e-52
Identity = 112/265 (42.26%), Postives = 172/265 (64.91%), Query Frame = 1 

Query: 4   SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFN 63
           +LTGG LLLRNK+ I++YRG DFLP  VA ++ +R+ EL + ++ +   R++        
Sbjct: 508 TLTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQ-ELTK-EIQDVEERVRNREIEAVQ 567

Query: 64  TGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNF 123
               +  A+AGTL++F +    +    T     K+  +A +    R ++  + +L++   
Sbjct: 568 PVGDKVPAEAGTLAEFYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKLNLAQS 627

Query: 124 KVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIE 183
           K +++ K L+K+ AS     P+ DQE+I+ EER  FRK+GLKM + L +G RG+FDGVIE
Sbjct: 628 KFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIE 687

Query: 184 GLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYK 243
            +H HWKHRE+VK+I+ Q+    V  TA+ LE ESGG+LV+++K+ +G+A+I +RGKNY+
Sbjct: 688 NMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYR 747

Query: 244 RPLHSVSKNLLTKRKALSRSLEMQR 269
           RP+    +NLLTK KAL RS+ MQR
Sbjct: 748 RPISLRPRNLLTKAKALKRSIAMQR 770

[Close]
BLAST of Lsi03G004340 vs. TAIR10
Match: AT4G14510.1 (AT4G14510.1 CRM family member 3B)

HSP 1 Score: 198.0 bits (502), Expect = 8.1e-51
Identity = 116/293 (39.59%), Postives = 173/293 (59.04%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCF-- 64
           LTGG LL RNK  ++ YRG  FL + V  +++++EM ++  Q  EE +RL+AS+      
Sbjct: 490 LTGGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPS 549

Query: 65  ---------NTGNMEERAK-----------------AGTLSDFKDITVEF-EDLTTGSTE 124
                       + EE+A+                 AGTL +  D T ++ ++L      
Sbjct: 550 IKANQQLARTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHV 609

Query: 125 SKLQADAVKGKIIRELRMQERRLSILNFKVEKSTKELTKLNASWRHVEPNEDQELITNEE 184
            +++ +  K +  + +R  ER+L+    K+ K+ + L K+  S +  E   D E IT EE
Sbjct: 610 EEMKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEE 669

Query: 185 RICFRKMGLKMDSCLTLGRRGIFDGVIEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLE 244
           R  F+K+GLKM + L LGRRG+FDG +E +H HWK+RE++K++   +        A +LE
Sbjct: 670 RFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALE 729

Query: 245 AESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQR 269
           AESGGILVSVDK+ +GYA+I++RGK+YKRP     KNLLTKRKAL+RSLE+Q+
Sbjct: 730 AESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQK 782

[Close]
BLAST of Lsi03G004340 vs. TAIR10
Match: AT4G29750.1 (AT4G29750.1 CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 188.7 bits (478), Expect = 4.9e-48
Identity = 111/267 (41.57%), Postives = 161/267 (60.30%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQR-WQLHEENSRLKAS--AFFC 64
           LT G L+ RNK  I+ YRGNDF+P  VA ++ +R+ E+    Q  E+ +R  AS  A   
Sbjct: 498 LTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAREMASTRATLT 557

Query: 65  FNTGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSIL 124
               + + +  AGTL++    +  +    +     +L+ ++   K    +R  E RL   
Sbjct: 558 SQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYG 617

Query: 125 NFKVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGV 184
             K+ ++ ++L K+       E   D E+IT EER+ +RK+GL MD  L LGRR ++DG 
Sbjct: 618 KQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGT 677

Query: 185 IEGLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKN 244
           IE +H HWKHRE+VKVI   ++  QV + A SLEAESGG+LVSVDK  +GYAII++RGKN
Sbjct: 678 IENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKN 737

Query: 245 YKRPLHSVSKNLLTKRKALSRSLEMQR 269
           Y+ P      NLLT++KA +RS+E+QR
Sbjct: 738 YQMPFRLRPSNLLTRKKAFARSIELQR 764

[Close]
BLAST of Lsi03G004340 vs. NCBI nr
Match: gi|659081301|ref|XP_008441260.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis melo])

HSP 1 Score: 481.9 bits (1239), Expect = 8.0e-133
Identity = 245/266 (92.11%), Postives = 255/266 (95.86%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGGTLLLRNKFLIILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+T
Sbjct: 472 LTGGTLLLRNKFLIILYRGNDFLPVGVADSIIQRELELQRWQLHEENSRLKASEFFCFDT 531

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
           GNMEER KAGTLSDFKD+TVE+EDL+T STESKLQA+A +GKIIRELRMQERRL ILNFK
Sbjct: 532 GNMEERGKAGTLSDFKDVTVEYEDLSTESTESKLQAEAKRGKIIRELRMQERRLKILNFK 591

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           VEKSTKELTKLNASW  VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIEG
Sbjct: 592 VEKSTKELTKLNASWSRVEPDADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIEG 651

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           LHQHWKHREVVKVITMQRA NQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYKR
Sbjct: 652 LHQHWKHREVVKVITMQRALNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 711

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           PLHSVSKNLLTKRKALSRSLEMQRIG
Sbjct: 712 PLHSVSKNLLTKRKALSRSLEMQRIG 737

[Close]
BLAST of Lsi03G004340 vs. NCBI nr
Match: gi|778673091|ref|XP_011649926.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Cucumis sativus])

HSP 1 Score: 480.7 bits (1236), Expect = 1.8e-132
Identity = 245/267 (91.76%), Postives = 256/267 (95.88%), Query Frame = 1 

Query: 4   SLTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFN 63
           +LTGGTLLLRNKF+IILYRGNDFLPVGVA+SIIQRE+ELQRWQLHEENSRLKAS FFCF+
Sbjct: 466 NLTGGTLLLRNKFVIILYRGNDFLPVGVADSIIQREVELQRWQLHEENSRLKASEFFCFD 525

Query: 64  TGNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNF 123
           T NMEER KAGTLSDFKDITV +EDL+TGSTES+LQA+A KGKIIR LRMQERRL ILNF
Sbjct: 526 TENMEERGKAGTLSDFKDITVGYEDLSTGSTESRLQAEAEKGKIIRGLRMQERRLKILNF 585

Query: 124 KVEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIE 183
           KVEKSTKELTKLNASWR VEP+ DQELITNEERICFRKMGLKMDSCLTLGRRG+FDGVIE
Sbjct: 586 KVEKSTKELTKLNASWRRVEPDADQELITNEERICFRKMGLKMDSCLTLGRRGVFDGVIE 645

Query: 184 GLHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYK 243
           GLHQHWKHREVVKVITMQRAFNQV YTAK LEAESGGILVSVDKLKEGYAIIIFRGKNYK
Sbjct: 646 GLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGYAIIIFRGKNYK 705

Query: 244 RPLHSVSKNLLTKRKALSRSLEMQRIG 271
           RPLHSVSKNLLTKRKALSRSLEMQRIG
Sbjct: 706 RPLHSVSKNLLTKRKALSRSLEMQRIG 732

[Close]
BLAST of Lsi03G004340 vs. NCBI nr
Match: gi|694352271|ref|XP_009357796.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 330.1 bits (845), Expect = 3.9e-87
Identity = 165/266 (62.03%), Postives = 209/266 (78.57%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGG LLLRNKF+I+LYRG DFLP GV++ + +RE+EL RWQLHEE++RLKA   F  + 
Sbjct: 501 LTGGVLLLRNKFIILLYRGKDFLPCGVSDLVAKREIELNRWQLHEEHARLKAIETFSEDD 560

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
             +      GTLS+F +I  E+ DL   + + +++ +A K ++ RELR QER++ ILN K
Sbjct: 561 DPLGSTGTVGTLSEFHNIQTEYGDLIRRNKDIEIKLEAEKARLGRELRNQERKVFILNRK 620

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +EKST +L+KLN+ W   E + DQE+IT EER CFRK+GLKM SCL LGRRG+F+GV EG
Sbjct: 621 IEKSTNKLSKLNSQWTPAEQDVDQEMITEEERECFRKIGLKMHSCLVLGRRGVFNGVKEG 680

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           +HQHWKHREVVKVITMQ+ F QV+YTAK LEAESGG+LVSVDKLK+G+AIII+RG+NY+R
Sbjct: 681 IHQHWKHREVVKVITMQKLFGQVMYTAKFLEAESGGVLVSVDKLKKGHAIIIYRGRNYRR 740

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           P   +  NLL+KRKAL RSLEMQRIG
Sbjct: 741 PFKPICGNLLSKRKALHRSLEMQRIG 766

[Close]
BLAST of Lsi03G004340 vs. NCBI nr
Match: gi|694352260|ref|XP_009357794.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 330.1 bits (845), Expect = 3.9e-87
Identity = 165/266 (62.03%), Postives = 209/266 (78.57%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGG LLLRNKF+I+LYRG DFLP GV++ + +RE+EL RWQLHEE++RLKA   F  + 
Sbjct: 501 LTGGVLLLRNKFIILLYRGKDFLPCGVSDLVAKREIELNRWQLHEEHARLKAIETFSEDD 560

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
             +      GTLS+F +I  E+ DL   + + +++ +A K ++ RELR QER++ ILN K
Sbjct: 561 DPLGSTGTVGTLSEFHNIQTEYGDLIRRNKDIEIKLEAEKARLGRELRNQERKVFILNRK 620

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +EKST +L+KLN+ W   E + DQE+IT EER CFRK+GLKM SCL LGRRG+F+GV EG
Sbjct: 621 IEKSTNKLSKLNSQWTPAEQDVDQEMITEEERECFRKIGLKMHSCLVLGRRGVFNGVKEG 680

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           +HQHWKHREVVKVITMQ+ F QV+YTAK LEAESGG+LVSVDKLK+G+AIII+RG+NY+R
Sbjct: 681 IHQHWKHREVVKVITMQKLFGQVMYTAKFLEAESGGVLVSVDKLKKGHAIIIYRGRNYRR 740

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           P   +  NLL+KRKAL RSLEMQRIG
Sbjct: 741 PFKPICGNLLSKRKALHRSLEMQRIG 766

[Close]
BLAST of Lsi03G004340 vs. NCBI nr
Match: gi|568857341|ref|XP_006482225.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Citrus sinensis])

HSP 1 Score: 327.8 bits (839), Expect = 1.9e-86
Identity = 171/266 (64.29%), Postives = 211/266 (79.32%), Query Frame = 1 

Query: 5   LTGGTLLLRNKFLIILYRGNDFLPVGVANSIIQREMELQRWQLHEENSRLKASAFFCFNT 64
           LTGG LLLRNKFLIILYRGNDFLP GV N I++RE ELQ  Q HEE +RLKA   F    
Sbjct: 461 LTGGVLLLRNKFLIILYRGNDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPH 520

Query: 65  GNMEERAKAGTLSDFKDITVEFEDLTTGSTESKLQADAVKGKIIRELRMQERRLSILNFK 124
             +E+ +KAGTLS+F++I  +F DL  G+ E +LQ +A    + RELR QER+L ILN K
Sbjct: 521 EPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLFILNIK 580

Query: 125 VEKSTKELTKLNASWRHVEPNEDQELITNEERICFRKMGLKMDSCLTLGRRGIFDGVIEG 184
           +EKS KEL++LN++W+  E + D E+IT EER C  K+G+KM+S L LGRRG+FDGVIEG
Sbjct: 581 IEKSAKELSRLNSAWKPREQDPDLEMITEEERQCLHKIGMKMNSNLLLGRRGVFDGVIEG 640

Query: 185 LHQHWKHREVVKVITMQRAFNQVIYTAKSLEAESGGILVSVDKLKEGYAIIIFRGKNYKR 244
           LHQHWK+REV +VIT Q+ F QVIYTAKSL AESGGIL+SVDKLKEG+AIII+RGKNY+R
Sbjct: 641 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 700

Query: 245 PLHSVSKNLLTKRKALSRSLEMQRIG 271
           PL  +++NLL+KR+AL RSLEMQR+G
Sbjct: 701 PLKLMTQNLLSKRQALRRSLEMQRLG 726

The following BLAST results are available for this feature:
BLAST of Lsi03G004340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CRS1_ARATH1.0e-7153.16Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabi... [more]
CRS1_MAIZE2.6e-6750.00Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea m... [more]
CRS1_ORYSJ1.1e-6549.25Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza... [more]
CFM3A_ARATH1.1e-5244.40CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t... [more]
CFM3_ORYSJ4.5e-5142.80CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa s... [more]
BLAST of Lsi03G004340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSY1_CUCSA1.2e-13291.76Uncharacterized protein OS=Cucumis sativus GN=Csa_2G404830 PE=4 SV=1[more]
W9S0T5_9ROSA5.1e-8662.19Chloroplastic group IIA intron splicing facilitator CRS1 OS=Morus notabilis GN=L... [more]
V4SY32_9ROSI1.5e-8563.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013368mg PE=4 SV=1[more]
A0A0B0PGE0_GOSAR3.3e-8562.41Uncharacterized protein OS=Gossypium arboreum GN=F383_03195 PE=4 SV=1[more]
A0A0D2PBD7_GOSRA4.8e-8462.03Uncharacterized protein OS=Gossypium raimondii GN=B456_007G182400 PE=4 SV=1[more]
BLAST of Lsi03G004340 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16180.15.8e-7353.16 ortholog of maize chloroplast splicing factor CRS1[more]
AT3G23070.16.0e-5444.40 CRM family member 3A[more]
AT3G18390.13.3e-5242.26 CRS1 / YhbY (CRM) domain-containing protein[more]
AT4G14510.18.1e-5139.59 CRM family member 3B[more]
AT4G29750.14.9e-4841.57 CRS1 / YhbY (CRM) domain-containing protein[more]
BLAST of Lsi03G004340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081301|ref|XP_008441260.1|8.0e-13392.11PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|778673091|ref|XP_011649926.1|1.8e-13291.76PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|694352271|ref|XP_009357796.1|3.9e-8762.03PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|694352260|ref|XP_009357794.1|3.9e-8762.03PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
gi|568857341|ref|XP_006482225.1|1.9e-8664.29PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplast... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004340.1Lsi03G004340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainGENE3DG3DSA:3.30.110.60coord: 151..245
score: 9.0
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 152..238
score: 4.8
IPR001890RNA-binding, CRM domainSMARTSM01103CRS1_YhbY_2coord: 151..238
score: 1.2
IPR001890RNA-binding, CRM domainPROFILEPS51295CRMcoord: 149..249
score: 17
IPR001890RNA-binding, CRM domainunknownSSF75471YhbY-likecoord: 150..246
score: 4.19
NoneNo IPR availablePANTHERPTHR31846FAMILY NOT NAMEDcoord: 4..270
score: 1.7E
NoneNo IPR availablePANTHERPTHR31846:SF10CHLOROPLASTIC GROUP IIA INTRON SPLICING FACILITATOR CRS1, CHLOROPLASTICcoord: 4..270
score: 1.7E