Lsi03G004230 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G004230
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 4791532 .. 4793454 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTGACTTGGGCGTTAAATAGCCCATTTTATTTCTCAATTAACCTTAATAGTGGTGGATAGGAATGAAACTCTAATTTGATACCAAATCATCTCCCCTAAACAAAAACACTAAAATACTCTTACTTTAATATCCTTAGAAGAGCAAAAATGGAAAATGGAAAACAATCAAAATTCTTAAATAAAACGTGGATCATAATCTGAAATCCTTTACTGGTTAATATCAATATGTTGGGCCTTTATGCCAGCAGTGTGGTTATGGTTTCTTCAACTCTGATAGGGAGAAGACATGGGATATCTCTTTGTTCTTCGGATTTCCTTGAAAAATTGATAGAGTTTCTTCATCTAGGTCAATTAGAACACTACACATTGTGTAAAGCTTAGGACCTGAAGACATTGAGAAAATTTTCGAATTCAGTTTTGAAAAGGCTAGGCAATATAAATCATCTTTTTATTTATTTTACCTTTCATATAGATAGGATATTCCTCGTTGTCTGTATCTCCAATAACCGACAGGAAATCATCTTTTGTTTCTTTTGCCATGACATCAGCTCGTCTTGTTCTGCTTGTGGAGTTTTCATCTATTATCTGTGTCAATTTATTTTGACTTCAAAACTGATCACTTGCAGATTTCATTTAGCTAATAGTTCAAAGGGTAATGATTAGGTACAACCTCACTAGGTGCAGCCGCATGCTTCTCTCTATTTATACACACAAAAAAAGAAACATAAAAAATAATTTATCTTTTTATTGTCCAACTGCCTGGGCTGCACAAAGATAGGTGCATCTAGGCAGAATCCAAACTTTTTTCTAGTTCAAATTCCAATGTTATGGAGATGGAGAAGGCTTTGAGGACAAATTTTTATTGCTGAAGAATGAATGTAACTTTCTTTCAATTAGAAGGCCGACCTTATAAGTTATACAATTGCATGGTGTCATTGCTTTATTTGTGGATTTTCCTGATATTATTACCTGCCTAATATTCTGAAGGTGGGAATACATATTTGCATGGAAAAATGGTGTAGCCTCAACCTCGTGGACTGACAATCTAAACTTTGATGCTGTTTCTACACTCGCAATTCTTCTTGTCTGAATATCAATCACATTATAATTGTGGCCGAGGGATATTTCTGCTGAGCGAATTCTCTGAAAAAGACAATCCAACCCTATTTGTTATGTTTTGAACTTGCTAAGGTAATTAAGCTGAAACATAATCTATAATTAATAGAAGACATTATTAATGAAGGGCCTTACAGCTATTGCATCTTCGAAGCTTGTAGATTCAAGGAGGTCCTGGGAGATAAAGTTTCGTCCGATTGCCCCAGGTTCAATCTCATCATTCACTGGACGCACTGTATTCATGGTAAATGCCTAAGAGATTGGAAAAGATATGTTTTATCATTCAGTATCAAAATAGTTGGACAAATATTATGTGTCAGTTTTCGATATTTCAACATCTATTTAGAGCTTGAGTCTATAATTTCCTATGTAAGATCTATCCATGCTCTTTAAATTGTTCCTTCAGAATGAATGGATGGTTTCAGAAAAAATAAAAAAGAAAGAAAATGTCTGAATAATGATGGTATGGGATGAGAACTTTACCAGGCCATTGCTATTAAAACTGAAAGCACGACTTGGTATCTCCCCTGCGTGTGTATAAGCAATGTAGCATGTCCCATTTTGCAGTTTTCCTTTGATCAAATAGCTTCAAAAGTGAAGAAAAGAAAAATGAAATTGGTTTAACAGTATGTTGAGCTCTTTGATAAAAACTAGGATAAAGTTTAGTTTTTGTGAACTTACGTGTAGCCAGACAGACCAAAGCTGGCATCTTCATTATGTGCTGCAAGGGCTAATGAATCACTAACAACAAGAATATCAGAACAATCATCTGTACAATCAACAATGGAAGCCTCGTCCTGA

mRNA sequence

ATGAAGATAGGATATTCCTCGTTGTCTGTATCTCCAATAACCGACAGGAAATCATCTTTTGTTTCTTTTGCCATGACATCAGCTCGTCTTGTTCTGCTTGTGGAGTGGGAATACATATTTGCATGGAAAAATGGTGTAGCCTCAACCTCGTGGACTGACAATCTAAACTTTGATGCTGTTTCTACACTCGCAATTCTTCTTGGCCTTACAGCTATTGCATCTTCGAAGCTTGTAGATTCAAGGAGGTCCTGGGAGATAAAGTTTCGTCCGATTGCCCCAGGTTCAATCTCATCATTCACTGGACGCACTGTATTCATGCCAGACAGACCAAAGCTGGCATCTTCATTATGTGCTGCAAGGGCTAATGAATCACTAACAACAAGAATATCAGAACAATCATCTGTACAATCAACAATGGAAGCCTCGTCCTGA

Coding sequence (CDS)

ATGAAGATAGGATATTCCTCGTTGTCTGTATCTCCAATAACCGACAGGAAATCATCTTTTGTTTCTTTTGCCATGACATCAGCTCGTCTTGTTCTGCTTGTGGAGTGGGAATACATATTTGCATGGAAAAATGGTGTAGCCTCAACCTCGTGGACTGACAATCTAAACTTTGATGCTGTTTCTACACTCGCAATTCTTCTTGGCCTTACAGCTATTGCATCTTCGAAGCTTGTAGATTCAAGGAGGTCCTGGGAGATAAAGTTTCGTCCGATTGCCCCAGGTTCAATCTCATCATTCACTGGACGCACTGTATTCATGCCAGACAGACCAAAGCTGGCATCTTCATTATGTGCTGCAAGGGCTAATGAATCACTAACAACAAGAATATCAGAACAATCATCTGTACAATCAACAATGGAAGCCTCGTCCTGA

Protein sequence

MKIGYSSLSVSPITDRKSSFVSFAMTSARLVLLVEWEYIFAWKNGVASTSWTDNLNFDAVSTLAILLGLTAIASSKLVDSRRSWEIKFRPIAPGSISSFTGRTVFMPDRPKLASSLCAARANESLTTRISEQSSVQSTMEASS
BLAST of Lsi03G004230 vs. TrEMBL
Match: A0A0D9UYE8_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-10
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 1

Query: 2   KIGYSSLSVSPITDRKSSFVSFAMTSARLVLLVE-------WEYIFAWKNGVASTSWTDN 61
           KIGY S +VSP +D   S  S   ++A L LL+E       W Y+ AWKNG A  S T+N
Sbjct: 322 KIGYLSSAVSPSSDSAFSLESGESSAALLSLLMEFSSSTFIWRYMLAWKNGAAPASRTEN 381

Query: 62  LNFDAVSTLAIL--------LGLTAIASSKLVDSRRSWEIKFRPIAPGSISSFTGRT 104
              +AVSTL IL        + +T +ASS+LV SRRS + KFR + P + S   G T
Sbjct: 382 RLPEAVSTLTILRRRTSIRCVVVTLMASSRLVASRRSRDTKFRAMPPATTSPRAGGT 438

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0D9UYE8_9ORYZ1.7e-1043.59Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004230.1Lsi03G004230.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None