Lsi03G004050 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_74
Location	chr03 : 4643450 .. 4643659 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATTGGGGCCCTGTTCTAATAGCCGTAATACTGTTCGTAATTCTGAGCCCCGGAGTTCTGTTTCAGTTGCCCAGCAAAAACAGAGTTGTGGAGTTCCTCAATATGCAGACCAGCGCCATCTCCATCTTCGTCCACACCATCATCTACTTTGGCCTCATCACTGTCTTTCTCATCGCCATTGGCGTTCACATTTCCAGTGGCTAA

mRNA sequence

ATGGGGGATTGGGGCCCTGTTCTAATAGCCGTAATACTGTTCGTAATTCTGAGCCCCGGAGTTCTGTTTCAGTTGCCCAGCAAAAACAGAGTTGTGGAGTTCCTCAATATGCAGACCAGCGCCATCTCCATCTTCGTCCACACCATCATCTACTTTGGCCTCATCACTGTCTTTCTCATCGCCATTGGCGTTCACATTTCCAGTGGCTAA

Coding sequence (CDS)

ATGGGGGATTGGGGCCCTGTTCTAATAGCCGTAATACTGTTCGTAATTCTGAGCCCCGGAGTTCTGTTTCAGTTGCCCAGCAAAAACAGAGTTGTGGAGTTCCTCAATATGCAGACCAGCGCCATCTCCATCTTCGTCCACACCATCATCTACTTTGGCCTCATCACTGTCTTTCTCATCGCCATTGGCGTTCACATTTCCAGTGGCTAA

Protein sequence

MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLIAIGVHISSG

Homology

[Close]

BLAST of Lsi03G004050 vs. TrEMBL
Match: B9RBG4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.2e-22
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+LSPGVLFQLP  +RVVEF N+QTS +S+FVHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Lsi03G004050 vs. TrEMBL
Match: A0A0A0LMX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.2e-22
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          MGDW PVLIAVILFV+LSPGVLFQLP  +RVV+F+NMQTSAIS+FVH+I +FGLIT+F+I
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. TrEMBL
Match: B9GZN7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s16890g PE=4 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-21
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
           M DWGPV+IAV+LFV+LSPG+LFQLP +NRVVEF NMQTSA+SI VHTII+FGLIT+FLI
Sbjct: 37  MSDWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSALSILVHTIIFFGLITIFLI 96

Query: 61  AIGVHISSG 70
           AIGVHI +G
Sbjct: 97  AIGVHIYTG 105

[Close]

BLAST of Lsi03G004050 vs. TrEMBL
Match: I1MYD6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G005000 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-21
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+LSPG+LFQLP ++RVVEF NMQTSAISI VHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGRSRVVEFGNMQTSAISILVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI +G
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lsi03G004050 vs. TrEMBL
Match: V7D3F5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G263200g PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-21
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+LSPG+LFQLP KNRVVEF  MQTS +SI VHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVLLSPGLLFQLPGKNRVVEFGKMQTSGVSILVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHINTG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.1 bits (248), Expect = 5.5e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPVLIAVILFV+LSPG+LFQ+P+  RVVEF NMQTS  SI VH II+FGLIT+F I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHISSG 70
          AI VHI SG
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-21
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV++AVILFV+L+PG+LFQ+P++ RVVEF NMQTS  SI VHTII+FGLIT+F I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHISSG 70
          AI +HI +G
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-18
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPVL+ VILFV+L+PG+LFQLP + + VEF N QTSA+S+ VH+++YF L+ VFL+
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIGVHISSG 70
          A+ +HI  G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of Lsi03G004050 vs. TAIR10
Match: AT5G40980.1 (AT5G40980.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-17
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1


Query: 3  DWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLIAI 62
          DWGPV++AV LF++LSPG+LFQLP++ RV+EF NM TS ISI VH IIYF ++T+ +IAI
Sbjct: 4  DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIAI 63

Query: 63 GVHI 67
           +HI
Sbjct: 64 QIHI 67

[Close]

BLAST of Lsi03G004050 vs. TAIR10
Match: AT3G27027.1 (AT3G27027.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 83.2 bits (204), Expect = 7.0e-17
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 1


Query: 3  DWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLIAI 62
          DWGPV++AV LF++LSPG+LFQLP++ RVVEF NM TS I+I VH  IYF ++T+ +IAI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 63 GVHI 67
           +HI
Sbjct: 64 QIHI 67

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: gi|659081410|ref|XP_008441320.1| (PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 58/69 (84.06%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          MGDWGPVLIAVILFV+LSPGVLFQLP  +RVV+F+NMQTSAIS+FVH+II+FGLIT+F+I
Sbjct: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AIGVHISSG
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: gi|802539272|ref|XP_012070204.1| (PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 54/69 (78.26%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+LSPGVLFQLP K+RVVEF+NMQTS +S+ VHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGKSRVVEFVNMQTSGVSVLVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: gi|255536863|ref|XP_002509498.1| (PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis])

HSP 1 Score: 110.9 bits (276), Expect = 8.8e-22
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          M DWGPV+IAV+LFV+LSPGVLFQLP  +RVVEF N+QTS +S+FVHTII+FGLIT+FLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHISSG 70
          AIGVHI++G
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: gi|778673217|ref|XP_011649952.1| (PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 8.8e-22
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
          MGDW PVLIAVILFV+LSPGVLFQLP  +RVV+F+NMQTSAIS+FVH+I +FGLIT+F+I
Sbjct: 1  MGDWAPVLIAVILFVVLSPGVLFQLPGNDRVVQFINMQTSAISVFVHSIFFFGLITIFVI 60

Query: 61 AIGVHISSG 70
          AI VHISSG
Sbjct: 61 AIDVHISSG 69

[Close]

BLAST of Lsi03G004050 vs. NCBI nr
Match: gi|566163091|ref|XP_002304675.2| (hypothetical protein POPTR_0003s16890g, partial [Populus trichocarpa])

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MGDWGPVLIAVILFVILSPGVLFQLPSKNRVVEFLNMQTSAISIFVHTIIYFGLITVFLI 60
           M DWGPV+IAV+LFV+LSPG+LFQLP +NRVVEF NMQTSA+SI VHTII+FGLIT+FLI
Sbjct: 37  MSDWGPVVIAVVLFVLLSPGLLFQLPGRNRVVEFGNMQTSALSILVHTIIFFGLITIFLI 96

Query: 61  AIGVHISSG 70
           AIGVHI +G
Sbjct: 97  AIGVHIYTG 105

The following BLAST results are available for this feature:

BLAST of Lsi03G004050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G004050 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RBG4_RICCO	6.2e-22	76.81	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676560 PE=4 SV=1	[more]
A0A0A0LMX4_CUCSA	6.2e-22	79.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406080 PE=4 SV=1	[more]
B9GZN7_POPTR	1.0e-21	79.71	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s16890g P...	[more]
I1MYD6_SOYBN	2.3e-21	79.71	Uncharacterized protein OS=Glycine max GN=GLYMA_18G005000 PE=4 SV=1	[more]
V7D3F5_PHAVU	2.3e-21	78.26	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G263200g PE=4 SV=1	[more]

BLAST of Lsi03G004050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63500.1	5.5e-22	75.36	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	3.6e-21	69.57	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	1.7e-18	59.42	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	1.1e-17	64.06	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	7.0e-17	62.50	Protein of unknown function (DUF 3339)	[more]

BLAST of Lsi03G004050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081410\|ref\|XP_008441320.1\|	1.2e-23	84.06	PREDICTED: uncharacterized protein LOC103485470 [Cucumis melo]	[more]
gi\|802539272\|ref\|XP_012070204.1\|	3.0e-22	78.26	PREDICTED: uncharacterized protein LOC105632430 [Jatropha curcas]	[more]
gi\|255536863\|ref\|XP_002509498.1\|	8.8e-22	76.81	PREDICTED: uncharacterized protein LOC8271433 [Ricinus communis]	[more]
gi\|778673217\|ref\|XP_011649952.1\|	8.8e-22	79.71	PREDICTED: uncharacterized protein LOC101212375 [Cucumis sativus]	[more]
gi\|566163091\|ref\|XP_002304675.2\|	1.5e-21	79.71	hypothetical protein POPTR_0003s16890g, partial [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004050.1	Lsi03G004050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..66 score: 9.7
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 2.3
None	No IPR available	PANTHER	PTHR33128:SF9	SUBFAMILY NOT NAMED	coord: 1..69 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004050	Silver-seed gourd	carlsiB017
Lsi03G004050	Silver-seed gourd	carlsiB924
Lsi03G004050	Cucumber (Chinese Long) v3	cuclsiB127
Lsi03G004050	Watermelon (97103) v2	lsiwmbB223
Lsi03G004050	Wax gourd	lsiwgoB322
Lsi03G004050	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004050	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004050	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004050	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004050	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004050	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004050	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G004050	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004050	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004050	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004050	Watermelon (Charleston Gray)	lsiwcgB229
Lsi03G004050	Watermelon (97103) v1	lsiwmB279
Lsi03G004050	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004050	Melon (DHL92) v3.6.1	lsimedB272