Lsi03G004040 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_135
Location	chr03 : 4634804 .. 4635013 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

mRNA sequence

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

Coding sequence (CDS)

ATGTCGGATTGGGCACCGGTGGTGATCGGAGTTGTACTGTTCGTACTGCTCTCTCCGGGGCTTCTGTTCCAGTTTCCGGGAAATAATCGGCAGTTTGAGTTCGGGAGCATGAAGACCAACGGCAAGGCTGTCGCTATACACACGCTCATCTTCTTCATCCTCTATGCCGTCTTCATTCTCGCTCTCCATATCCACATCTACACTGGCTGA

Protein sequence

MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFILALHIHIYTG

Homology

[Close]

BLAST of Lsi03G004040 vs. TrEMBL
Match: A0A0A0LMK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406095 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. TrEMBL
Match: A0A164VTJ6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021798 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.0e-26
Identity = 55/69 (79.71%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PV+IGVVLF+LL PGLLFQFPGN++Q EFGSMKTNGK++A+HTLIFF+LYA+F+L
Sbjct: 1  MADWGPVLIGVVLFILLQPGLLFQFPGNSKQLEFGSMKTNGKSIAVHTLIFFVLYAIFVL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. TrEMBL
Match: A0A067FKC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035267mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-24
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PVVIGV+LFVLL PGLLFQ PG+NRQ EFGSMKTNGKA+A+H+LIFFILYA+ IL
Sbjct: 1  MADWGPVVIGVLLFVLLQPGLLFQLPGHNRQLEFGSMKTNGKAIAVHSLIFFILYAILIL 60

Query: 61 ALHIHIYTG 70
          A+H+HIYTG
Sbjct: 61 AVHVHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. TrEMBL
Match: A0A068V855_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019177001 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-24
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PV+IGVVLFVLL PGLLFQFPGNN+  EFGSMKTNGK++A+HTLIFF LYA+ IL
Sbjct: 1  MADWGPVLIGVVLFVLLQPGLLFQFPGNNKNLEFGSMKTNGKSIAVHTLIFFALYAILIL 60

Query: 61 ALHIHIYTG 70
          A+H+HIYTG
Sbjct: 61 AVHVHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. TrEMBL
Match: A0A0D2PXJ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272700 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-24
Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DWAPV++GVVLFVLLSPGLLF FPGN +Q EFGSMKTNGKA+AIHTL+FF +YAV I+
Sbjct: 1  MADWAPVLVGVVLFVLLSPGLLFSFPGNGKQLEFGSMKTNGKAIAIHTLLFFAIYAVLIM 60

Query: 61 ALHIHIYTG 70
          A+H+HIYTG
Sbjct: 61 AVHLHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. TAIR10
Match: AT3G27030.1 (AT3G27030.1 unknown protein)

HSP 1 Score: 110.5 bits (275), Expect = 4.1e-25
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           M+DWAPV++GVVLFV+LSPGLLF  PGNNR  +FG +KTNGKA+A+HTLIFF +Y + IL
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  ALHIHIYTG 70
           AL++HIYTG
Sbjct: 134 ALNLHIYTG 142

[Close]

BLAST of Lsi03G004040 vs. TAIR10
Match: AT5G40970.1 (AT5G40970.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 100.5 bits (249), Expect = 4.2e-22
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DWAPV++GVVLFV+LSPGLLF  PG++   +FG MKTNGKA+A+HTLIFF  Y + IL
Sbjct: 1  MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60

Query: 61 ALHIHIYTG 70
          A+++HI TG
Sbjct: 61 AVNLHITTG 69

[Close]

BLAST of Lsi03G004040 vs. TAIR10
Match: AT3G48660.1 (AT3G48660.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 89.7 bits (221), Expect = 7.4e-19
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PVV+ V+LFVLL+PGLLFQ P   R  EFG+M+T+G ++ +HT+IFF L  +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 ALHIHIYTG 70
          A+ +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. TAIR10
Match: AT5G63500.1 (AT5G63500.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 86.3 bits (212), Expect = 8.2e-18
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PV+I V+LFV+LSPGLLFQ P   R  EFG+M+T+G ++ +H +IFF L  +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 ALHIHIYTG 70
          A+++HIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Lsi03G004040 vs. TAIR10
Match: AT5G08391.1 (AT5G08391.1 Protein of unknown function (DUF 3339))

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-17
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDW PV++ V+LFV+L+PGLLFQ PG  +  EFG+ +T+  +V +H+L++F L  VF+L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 ALHIHIYTG 70
          AL IHIY G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: gi|659081414|ref|XP_008441322.1| (PREDICTED: uncharacterized protein LOC103485472 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFF+LYAVFIL
Sbjct: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFVLYAVFIL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: gi|1021033053|gb|KZM90837.1| (hypothetical protein DCAR_021798 [Daucus carota subsp. sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 55/69 (79.71%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DW PV+IGVVLF+LL PGLLFQFPGN++Q EFGSMKTNGK++A+HTLIFF+LYA+F+L
Sbjct: 1  MADWGPVLIGVVLFILLQPGLLFQFPGNSKQLEFGSMKTNGKSIAVHTLIFFVLYAIFVL 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: gi|1009151967|ref|XP_015893838.1| (PREDICTED: uncharacterized protein LOC107427943 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DWAPVVIGVVLFVLL PGLLFQFPG+++Q EFGSMKTNGKA+A+HTLIFF LY +FIL
Sbjct: 1  MADWAPVVIGVVLFVLLQPGLLFQFPGHHKQLEFGSMKTNGKAIAVHTLIFFALYCIFIL 60

Query: 61 ALHIHIYTG 70
          ALH+HIYTG
Sbjct: 61 ALHVHIYTG 69

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: gi|1009151971|ref|XP_015893840.1| (PREDICTED: uncharacterized protein LOC107427943 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
           M+DWAPVVIGVVLFVLL PGLLFQFPG+++Q EFGSMKTNGKA+A+HTLIFF LY +FIL
Sbjct: 74  MADWAPVVIGVVLFVLLQPGLLFQFPGHHKQLEFGSMKTNGKAIAVHTLIFFALYCIFIL 133

Query: 61  ALHIHIYTG 70
           ALH+HIYTG
Sbjct: 134 ALHVHIYTG 142

[Close]

BLAST of Lsi03G004040 vs. NCBI nr
Match: gi|823254744|ref|XP_012460019.1| (PREDICTED: uncharacterized protein LOC105780313 [Gossypium raimondii])

HSP 1 Score: 121.3 bits (303), Expect = 6.5e-25
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MSDWAPVVIGVVLFVLLSPGLLFQFPGNNRQFEFGSMKTNGKAVAIHTLIFFILYAVFIL 60
          M+DWAPV+IGVVLFVLLSPGLLF FPGN++Q EFGSMKTNGKA+AIHTL+FF +YAV I+
Sbjct: 1  MADWAPVLIGVVLFVLLSPGLLFSFPGNSKQLEFGSMKTNGKAIAIHTLLFFAIYAVLIV 60

Query: 61 ALHIHIYTG 70
          ALHIHIYTG
Sbjct: 61 ALHIHIYTG 69

The following BLAST results are available for this feature:

BLAST of Lsi03G004040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G004040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK8_CUCSA	4.7e-30	98.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406095 PE=4 SV=1	[more]
A0A164VTJ6_DAUCA	7.0e-26	79.71	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_021798 PE=4 SV=1	[more]
A0A067FKC6_CITSI	1.3e-24	79.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035267mg PE=4 SV=1	[more]
A0A068V855_COFCA	1.7e-24	78.26	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019177001 PE=4 SV=1	[more]
A0A0D2PXJ7_GOSRA	2.3e-24	78.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G272700 PE=4 SV=1	[more]

BLAST of Lsi03G004040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27030.1	4.1e-25	71.01	unknown protein	[more]
AT5G40970.1	4.2e-22	65.22	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	7.4e-19	56.52	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	8.2e-18	53.62	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	2.4e-17	55.07	Protein of unknown function (DUF 3339)	[more]

BLAST of Lsi03G004040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081414\|ref\|XP_008441322.1\|	6.7e-30	98.55	PREDICTED: uncharacterized protein LOC103485472 [Cucumis melo]	[more]
gi\|1021033053\|gb\|KZM90837.1\|	1.0e-25	79.71	hypothetical protein DCAR_021798 [Daucus carota subsp. sativus]	[more]
gi\|1009151967\|ref\|XP_015893838.1\|	1.7e-25	82.61	PREDICTED: uncharacterized protein LOC107427943 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009151971\|ref\|XP_015893840.1\|	1.7e-25	82.61	PREDICTED: uncharacterized protein LOC107427943 isoform X2 [Ziziphus jujuba]	[more]
gi\|823254744\|ref\|XP_012460019.1\|	6.5e-25	82.61	PREDICTED: uncharacterized protein LOC105780313 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021775	DUF3339

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004040.1	Lsi03G004040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 score: 1.2
None	No IPR available	PANTHER	PTHR33128	FAMILY NOT NAMED	coord: 1..69 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G004040	Bhi04G001995	Wax gourd	lsiwgoB322
Lsi03G004040	Cp4.1LG13g11210	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004040	Carg06053	Silver-seed gourd	carlsiB017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004040	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004040	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004040	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004040	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004040	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004040	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G004040	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004040	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004040	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004040	Watermelon (Charleston Gray)	lsiwcgB229
Lsi03G004040	Watermelon (97103) v1	lsiwmB279
Lsi03G004040	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004040	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G004040	Silver-seed gourd	carlsiB924
Lsi03G004040	Cucumber (Chinese Long) v3	cuclsiB127
Lsi03G004040	Watermelon (97103) v2	lsiwmbB223