Lsi03G003920 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G003920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionChloride channel protein
Locationchr03 : 4536068 .. 4538097 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGTATATTTTTAATATTTCAAAATTATTTATGAATATTGTTAGAGTAGCACATGGCACATGTGGGTATGCATGTTAAGACTAGTGGACCTCTTTTGTGGATAGAGTGGAATTTTCAATGGATAAAACTTATTAAACCATAATTGAAGTTTTCATATTATAAAATTATGAATGACCATATATTTCACTTTCTAGTTTCTAATGTTTACTCTTTTTTAAAAGTGATGAGTAACCCATCGATTGTTTTTAGTAAATATTCAATCTCATCTATTTTGTTTCTATCTTCATATTTCTAATATTATATTTTAATAAAAATATATCTCATGAAATTTCATATCAAATTCAATACATATATCTTAATAGCCAAGAATTAAAATGAATTTTCTACCTAAAATTTAGAGCAATTGTTTTAAATAGTAAAACTGCGGGAAATATTTATAAAAATAACAAAAATTCATTGTTTATCAATGATAAATAAATGTCTATCAATGTTTATTATTGATAGATAGTGATATTTTGTTATATTTATAAATAAGTTACTCATTTTACTATATTTGAAAACATCTCAAATTTATGAGTGATAATCAAATATCTCAAATGAGATGAAACTTCTCTTTTCAAATAAGTGGATTATCACAAATATTTTTTATCTATTGAAAATCTGAAACAACCCAAGCAACTTGAGTCCTGGGACAAGCTTCTTTTATTAAAAGAATAATAATAATAATAATAAAGTTATAAAGACAGAGAATAAATGTATTTTTGATATAAAAATGAAATATTTGGTGAAAGAAAGGTGCGATAATGGTAAACTAATGATCCAAATGGTCTAAAATTAAATGAGTAGCAAGTTGGCTTGTTGAAAACTATAGACAAATTATTGTCCCAACAAAAGAAAAAAAAAAAAAAGACCATAGATAAACCAAATATGAAAAGGAAAAAAAAGGGTAAAGAAGATGGGGGAAAATGAACAACTGGCCATTCAAATGACCACAAGGGAGAAAGTGACAAGACAAGTGCATGATTGAGATAACATTGTTGCATTAAAATCCTAGAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTTCACTGCACCAATGGATGAAAATTCAAGCCTGGTCACAGAATCAACTCTCACAAACACCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGTAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGTAAGAATACTACATAAAAACAAAACATCCCTTTTTTTTTCTTTCTTTTTTTTTCCTTTTTTGTTCAGTTCTCCAATTTCTTGAATTGGGTTTGGTTTGAATTCAGGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACACTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTCTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTAAGTACAAACCGATTAGACTTGGTTTTTTTCATCTGCAAAAACAGAAACTTAATGAATTTAAAATTTCTGGTTTTGAAATGATTCTGATTTAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTATTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCTTATCTCAATGGTATAGACACTCCTAATATGTTTGGTGCCACGACGTTGATCGTTAAGGTGCGTATGCCACACACTTTCTTGTTGAATCTCAGCGCAACGAACACCGTCGATCAAATCAACTTTGGATTGTCATCACTGTGTATTGCCATATCCTCATTCGCTTTTGATTGA

mRNA sequence

ATGTATAAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTTCACTGCACCAATGGATGAAAATTCAAGCCTGGTCACAGAATCAACTCTCACAAACACCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGTAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACACTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTCTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTATTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCTTATCTCAATGGTATAGACACTCCTAATATGTTTGGTGCCACGACGTTGATCGTTAAGGTGCGTATGCCACACACTTTCTTGTTGAATCTCAGCGCAACGAACACCGTCGATCAAATCAACTTTGGATTGTCATCACTGTGTATTGCCATATCCTCATTCGCTTTTGATTGA

Coding sequence (CDS)

ATGTATAAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTTCACTGCACCAATGGATGAAAATTCAAGCCTGGTCACAGAATCAACTCTCACAAACACCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGTAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACACTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTCTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTATTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCTTATCTCAATGGTATAGACACTCCTAATATGTTTGGTGCCACGACGTTGATCGTTAAGGTGCGTATGCCACACACTTTCTTGTTGAATCTCAGCGCAACGAACACCGTCGATCAAATCAACTTTGGATTGTCATCACTGTGTATTGCCATATCCTCATTCGCTTTTGATTGA

Protein sequence

MYKQRRSFALSSKPQNLTIFSSLCVHFTAPMDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKVRMPHTFLLNLSATNTVDQINFGLSSLCIAISSFAFD
BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.4e-67
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1

Query: 54  EERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQ 113
           E  DPESN LNQPL+K +RTLSS+PLA+VGAKVS IESLDYEINENDLFKHDWR RS+ Q
Sbjct: 18  EGGDPESNTLNQPLVKANRTLSSTPLALVGAKVSHIESLDYEINENDLFKHDWRKRSKAQ 77

Query: 114 VLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTA 173
           VLQY+F KWTLACLVGL TG+IATLINLA+ENIAGYKLL V  ++ +ERY+ G      A
Sbjct: 78  VLQYVFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGHFLTQERYVTGLMVLVGA 137

Query: 174 NFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKV 223
           N  LT VA++LCVCFAPTAAGPGIPEIKAYLNG+DTPNMFGATT+IVK+
Sbjct: 138 NLGLTLVASVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTMIVKI 186

BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 3.4e-66
Identity = 136/192 (70.83%), Postives = 154/192 (80.21%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           MDE+ +L   ++  N      +EE  DPE+N LNQPLLKR RTLSS+PLA+VGAKVS IE
Sbjct: 1   MDEDGNLQISNSNYNG-----EEEGEDPENNTLNQPLLKRHRTLSSTPLALVGAKVSHIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+ QV QYIF KWTLACLVGL TG+IATLINLA+ENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKAQVFQYIFLKWTLACLVGLFTGLIATLINLAVENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LL V  YI ++R+  G   FT AN  LT VA +L V FAPTAAGPGIPEIKAYLNGIDTP
Sbjct: 121 LLAVGYYIAQDRFWTGLMVFTGANLGLTLVATVLVVYFAPTAAGPGIPEIKAYLNGIDTP 180

Query: 211 NMFGATTLIVKV 223
           NMFG TT++VK+
Sbjct: 181 NMFGFTTMMVKI 187

BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.4e-40
Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 1

Query: 57  DPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQ 116
           D  S    QPLL R+R  ++S +AIVGA    IESLDYEI END FK DWRSR ++++LQ
Sbjct: 31  DDGSVGFRQPLLARNRKNTTSQIAIVGANTCPIESLDYEIFENDFFKQDWRSRKKIEILQ 90

Query: 117 YIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFL 176
           Y F KW LA L+GL TG++  L NL +ENIAG+KLL +   + +E+Y   F  F   N +
Sbjct: 91  YTFLKWALAFLIGLATGLVGFLNNLGVENIAGFKLLLIGNLMLKEKYFQAFFAFAGCNLI 150

Query: 177 LTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKV 223
           L   AA LC   AP AAG GIPE+KAYLNGID  ++   +TL VK+
Sbjct: 151 LATAAASLCAFIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKI 196

BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=3 SV=2)

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-36
Identity = 82/172 (47.67%), Postives = 110/172 (63.95%), Query Frame = 1

Query: 51  PQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRS 110
           P     D  + PL  P L+R+ T S+S +AIVGA V  IESLDYEI END FK DWR RS
Sbjct: 2   PNSTTEDSVAVPL-LPSLRRA-TNSTSQVAIVGANVCPIESLDYEIAENDFFKQDWRGRS 61

Query: 111 RVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYF 170
           +V++ QY+F KW L   +G++  +I    NLA+EN+AG K +     +   R+ MGF  F
Sbjct: 62  KVEIFQYVFMKWLLCFCIGIIVSLIGFANNLAVENLAGVKFVVTSNMMIAGRFAMGFVVF 121

Query: 171 TTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKV 223
           +  N +LT  A+++    AP AAG GIPE+KAYLNG+D P +F   TLI+K+
Sbjct: 122 SVTNLILTLFASVITAFVAPAAAGSGIPEVKAYLNGVDAPEIFSLRTLIIKI 171

BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-21
Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 1

Query: 89  IESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAG 148
           + SLDYE+ EN  ++ +   R ++ V  Y+  KW  + L+G+ TG+ A  INL++EN AG
Sbjct: 44  VNSLDYEVIENYAYREEQAHRGKLYVGYYVAVKWFFSLLIGIGTGLAAVFINLSVENFAG 103

Query: 149 YKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGID 208
           +K       I++  Y  GF  +   N +L F +A +   FAP AAG GIPEIK YLNGID
Sbjct: 104 WKFALTFAIIQKS-YFAGFIVYLLINLVLVFSSAYIITQFAPAAAGSGIPEIKGYLNGID 163

Query: 209 TPNMFGATTLIVKV 223
            P      TLI K+
Sbjct: 164 IPGTLLFRTLIGKI 176

BLAST of Lsi03G003920 vs. TrEMBL
Match: I1Z8C8_CUCSA (Chloride channel protein OS=Cucumis sativus GN=ClCa PE=2 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 183/192 (95.31%), Postives = 188/192 (97.92%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           MDEN S VTESTLTN+MEAEPQ+EERDPESNPLNQPLLKR+RTLSSSPLAIVGAKVSLIE
Sbjct: 1   MDENPSFVTESTLTNSMEAEPQDEERDPESNPLNQPLLKRNRTLSSSPLAIVGAKVSLIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+VQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LLKVV YIKEERYLMGFAYFTTANFLLTFVAA LCVCFAPTAAGPGIPEIKAYLNGIDTP
Sbjct: 121 LLKVVDYIKEERYLMGFAYFTTANFLLTFVAAALCVCFAPTAAGPGIPEIKAYLNGIDTP 180

Query: 211 NMFGATTLIVKV 223
           NMFGATTLIVK+
Sbjct: 181 NMFGATTLIVKI 192

BLAST of Lsi03G003920 vs. TrEMBL
Match: V4W2Z9_9ROSI (Chloride channel protein OS=Citrus clementina GN=CICLE_v10014341mg PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 156/192 (81.25%), Postives = 173/192 (90.10%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           M+ENS+ V  +T  + MEA+  EEERDPESN L QPLLKRSRTLSSSPLA+VGAKVS IE
Sbjct: 1   MEENSNPVARATQAH-MEAD--EEERDPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+VQVLQYIF KW+LACLVGLLTG+IATLINLA+ENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LL VV +I+++RYL GF YFT  NFLLT VAA+LCVCFAPTAAGPGIPEIKAYLNG+DTP
Sbjct: 121 LLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTP 180

Query: 211 NMFGATTLIVKV 223
           NMFGATTLIVK+
Sbjct: 181 NMFGATTLIVKI 189

BLAST of Lsi03G003920 vs. TrEMBL
Match: A0A067DWD1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0039661mg PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.0e-77
Identity = 156/191 (81.68%), Postives = 172/191 (90.05%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           M+ENS+ V  +T  + MEA+  EEERDPESN L QPLLKRSRTLSSSPLA+VGAKVS IE
Sbjct: 1   MEENSNPVARATQAH-MEAD--EEERDPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+VQVLQYIF KW+LACLVGLLTG+IATLINLA+ENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LL VV +I+++RYL GF YFT  NFLLT VAA+LCVCFAPTAAGPGIPEIKAYLNG+DTP
Sbjct: 121 LLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTP 180

Query: 211 NMFGATTLIVK 222
           NMFGATTLIVK
Sbjct: 181 NMFGATTLIVK 188

BLAST of Lsi03G003920 vs. TrEMBL
Match: A0A151RNH6_CAJCA (Chloride channel protein OS=Cajanus cajan GN=KK1_034477 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.9e-77
Identity = 158/193 (81.87%), Postives = 171/193 (88.60%), Query Frame = 1

Query: 31  MDENSSLVTESTLTN-TMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLI 90
           M+E SSL  EST  N TME E   EERDPESNPLN+PLLKR+RTLSS+PLA+VGAKVS I
Sbjct: 1   MNEESSLHKESTSINDTMEEEV--EERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYI 60

Query: 91  ESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGY 150
           ESLDYEINENDLFK DWRSRSR QVLQYIF KWTLA LVGLLTG+IATLINLA+ENIAGY
Sbjct: 61  ESLDYEINENDLFKQDWRSRSRTQVLQYIFWKWTLAFLVGLLTGVIATLINLAVENIAGY 120

Query: 151 KLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDT 210
           KLL VV YI++ERYLMGF YF   NF+LTFVAAILCVCFAPTAAGPGIPEIKAYLNG+DT
Sbjct: 121 KLLAVVKYIQKERYLMGFLYFAGLNFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDT 180

Query: 211 PNMFGATTLIVKV 223
           PNM+GATTL VK+
Sbjct: 181 PNMYGATTLFVKI 191

BLAST of Lsi03G003920 vs. TrEMBL
Match: A0A0R0JZI4_SOYBN (Chloride channel protein OS=Glycine max GN=GLYMA_05G077100 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.9e-76
Identity = 152/192 (79.17%), Postives = 167/192 (86.98%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           M E SSL+ EST  N      + EERDPESNPLN+PLLKR+RTLSS+PLA+VGAKVS IE
Sbjct: 1   MGEESSLLKESTSINDTNMVEEVEERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFK DWRSRSR QVLQYIF KWTLA LVGLLTG+IATLINLA+ENIAGYK
Sbjct: 61  SLDYEINENDLFKQDWRSRSRTQVLQYIFWKWTLAFLVGLLTGVIATLINLAVENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
            L VV +I++ERYL GF YFT  NFLLTFVA+ILCVCFAPTAAGPGIPEIKAYLNG+DTP
Sbjct: 121 FLAVVNFIQKERYLRGFLYFTGINFLLTFVASILCVCFAPTAAGPGIPEIKAYLNGVDTP 180

Query: 211 NMFGATTLIVKV 223
           NM+GATTL VK+
Sbjct: 181 NMYGATTLFVKI 192

BLAST of Lsi03G003920 vs. TAIR10
Match: AT3G27170.1 (AT3G27170.1 chloride channel B)

HSP 1 Score: 257.7 bits (657), Expect = 7.7e-69
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1

Query: 54  EERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQ 113
           E  DPESN LNQPL+K +RTLSS+PLA+VGAKVS IESLDYEINENDLFKHDWR RS+ Q
Sbjct: 18  EGGDPESNTLNQPLVKANRTLSSTPLALVGAKVSHIESLDYEINENDLFKHDWRKRSKAQ 77

Query: 114 VLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTA 173
           VLQY+F KWTLACLVGL TG+IATLINLA+ENIAGYKLL V  ++ +ERY+ G      A
Sbjct: 78  VLQYVFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGHFLTQERYVTGLMVLVGA 137

Query: 174 NFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKV 223
           N  LT VA++LCVCFAPTAAGPGIPEIKAYLNG+DTPNMFGATT+IVK+
Sbjct: 138 NLGLTLVASVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTMIVKI 186

BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G40890.1 (AT5G40890.1 chloride channel A)

HSP 1 Score: 253.1 bits (645), Expect = 1.9e-67
Identity = 136/192 (70.83%), Postives = 154/192 (80.21%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           MDE+ +L   ++  N      +EE  DPE+N LNQPLLKR RTLSS+PLA+VGAKVS IE
Sbjct: 1   MDEDGNLQISNSNYNG-----EEEGEDPENNTLNQPLLKRHRTLSSTPLALVGAKVSHIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+ QV QYIF KWTLACLVGL TG+IATLINLA+ENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKAQVFQYIFLKWTLACLVGLFTGLIATLINLAVENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LL V  YI ++R+  G   FT AN  LT VA +L V FAPTAAGPGIPEIKAYLNGIDTP
Sbjct: 121 LLAVGYYIAQDRFWTGLMVFTGANLGLTLVATVLVVYFAPTAAGPGIPEIKAYLNGIDTP 180

Query: 211 NMFGATTLIVKV 223
           NMFG TT++VK+
Sbjct: 181 NMFGFTTMMVKI 187

BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G49890.1 (AT5G49890.1 chloride channel C)

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-41
Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 1

Query: 57  DPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQ 116
           D  S    QPLL R+R  ++S +AIVGA    IESLDYEI END FK DWRSR ++++LQ
Sbjct: 31  DDGSVGFRQPLLARNRKNTTSQIAIVGANTCPIESLDYEIFENDFFKQDWRSRKKIEILQ 90

Query: 117 YIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFL 176
           Y F KW LA L+GL TG++  L NL +ENIAG+KLL +   + +E+Y   F  F   N +
Sbjct: 91  YTFLKWALAFLIGLATGLVGFLNNLGVENIAGFKLLLIGNLMLKEKYFQAFFAFAGCNLI 150

Query: 177 LTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKV 223
           L   AA LC   AP AAG GIPE+KAYLNGID  ++   +TL VK+
Sbjct: 151 LATAAASLCAFIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKI 196

BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G33280.1 (AT5G33280.1 Voltage-gated chloride channel family protein)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-37
Identity = 82/172 (47.67%), Postives = 110/172 (63.95%), Query Frame = 1

Query: 51  PQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRS 110
           P     D  + PL  P L+R+ T S+S +AIVGA V  IESLDYEI END FK DWR RS
Sbjct: 2   PNSTTEDSVAVPL-LPSLRRA-TNSTSQVAIVGANVCPIESLDYEIAENDFFKQDWRGRS 61

Query: 111 RVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYF 170
           +V++ QY+F KW L   +G++  +I    NLA+EN+AG K +     +   R+ MGF  F
Sbjct: 62  KVEIFQYVFMKWLLCFCIGIIVSLIGFANNLAVENLAGVKFVVTSNMMIAGRFAMGFVVF 121

Query: 171 TTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKV 223
           +  N +LT  A+++    AP AAG GIPE+KAYLNG+D P +F   TLI+K+
Sbjct: 122 SVTNLILTLFASVITAFVAPAAAGSGIPEVKAYLNGVDAPEIFSLRTLIIKI 171

BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G26240.1 (AT5G26240.1 chloride channel D)

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22
Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 1

Query: 89  IESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAG 148
           + SLDYE+ EN  ++ +   R ++ V  Y+  KW  + L+G+ TG+ A  INL++EN AG
Sbjct: 44  VNSLDYEVIENYAYREEQAHRGKLYVGYYVAVKWFFSLLIGIGTGLAAVFINLSVENFAG 103

Query: 149 YKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGID 208
           +K       I++  Y  GF  +   N +L F +A +   FAP AAG GIPEIK YLNGID
Sbjct: 104 WKFALTFAIIQKS-YFAGFIVYLLINLVLVFSSAYIITQFAPAAAGSGIPEIKGYLNGID 163

Query: 209 TPNMFGATTLIVKV 223
            P      TLI K+
Sbjct: 164 IPGTLLFRTLIGKI 176

BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|525507272|ref|NP_001267676.1| (chloride channel protein CLC-b-like [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 1.7e-94
Identity = 183/192 (95.31%), Postives = 188/192 (97.92%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           MDEN S VTESTLTN+MEAEPQ+EERDPESNPLNQPLLKR+RTLSSSPLAIVGAKVSLIE
Sbjct: 1   MDENPSFVTESTLTNSMEAEPQDEERDPESNPLNQPLLKRNRTLSSSPLAIVGAKVSLIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+VQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LLKVV YIKEERYLMGFAYFTTANFLLTFVAA LCVCFAPTAAGPGIPEIKAYLNGIDTP
Sbjct: 121 LLKVVDYIKEERYLMGFAYFTTANFLLTFVAAALCVCFAPTAAGPGIPEIKAYLNGIDTP 180

Query: 211 NMFGATTLIVKV 223
           NMFGATTLIVK+
Sbjct: 181 NMFGATTLIVKI 192

BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|659081469|ref|XP_008441347.1| (PREDICTED: chloride channel protein CLC-b-like [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 2.9e-94
Identity = 183/192 (95.31%), Postives = 188/192 (97.92%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           M+EN S VTESTLTN+MEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE
Sbjct: 1   MEENPSFVTESTLTNSMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+VQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LLKVV YIK+ERYLMGFAYFTTANFLLTFVAA LCVCFAPTAAGPGIPEIKAYLNGIDTP
Sbjct: 121 LLKVVDYIKQERYLMGFAYFTTANFLLTFVAASLCVCFAPTAAGPGIPEIKAYLNGIDTP 180

Query: 211 NMFGATTLIVKV 223
           NMFGATTLIVK+
Sbjct: 181 NMFGATTLIVKI 192

BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|567909541|ref|XP_006447084.1| (hypothetical protein CICLE_v10014341mg [Citrus clementina])

HSP 1 Score: 297.7 bits (761), Expect = 1.9e-77
Identity = 156/192 (81.25%), Postives = 173/192 (90.10%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           M+ENS+ V  +T  + MEA+  EEERDPESN L QPLLKRSRTLSSSPLA+VGAKVS IE
Sbjct: 1   MEENSNPVARATQAH-MEAD--EEERDPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+VQVLQYIF KW+LACLVGLLTG+IATLINLA+ENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LL VV +I+++RYL GF YFT  NFLLT VAA+LCVCFAPTAAGPGIPEIKAYLNG+DTP
Sbjct: 121 LLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTP 180

Query: 211 NMFGATTLIVKV 223
           NMFGATTLIVK+
Sbjct: 181 NMFGATTLIVKI 189

BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|641823956|gb|KDO43322.1| (hypothetical protein CISIN_1g0039661mg, partial [Citrus sinensis])

HSP 1 Score: 296.6 bits (758), Expect = 4.2e-77
Identity = 156/191 (81.68%), Postives = 172/191 (90.05%), Query Frame = 1

Query: 31  MDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIE 90
           M+ENS+ V  +T  + MEA+  EEERDPESN L QPLLKRSRTLSSSPLA+VGAKVS IE
Sbjct: 1   MEENSNPVARATQAH-MEAD--EEERDPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIE 60

Query: 91  SLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYK 150
           SLDYEINENDLFKHDWRSRS+VQVLQYIF KW+LACLVGLLTG+IATLINLA+ENIAGYK
Sbjct: 61  SLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYK 120

Query: 151 LLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTP 210
           LL VV +I+++RYL GF YFT  NFLLT VAA+LCVCFAPTAAGPGIPEIKAYLNG+DTP
Sbjct: 121 LLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTP 180

Query: 211 NMFGATTLIVK 222
           NMFGATTLIVK
Sbjct: 181 NMFGATTLIVK 188

BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|1012332629|gb|KYP44053.1| (Chloride channel protein CLC-b [Cajanus cajan])

HSP 1 Score: 296.2 bits (757), Expect = 5.5e-77
Identity = 158/193 (81.87%), Postives = 171/193 (88.60%), Query Frame = 1

Query: 31  MDENSSLVTESTLTN-TMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLI 90
           M+E SSL  EST  N TME E   EERDPESNPLN+PLLKR+RTLSS+PLA+VGAKVS I
Sbjct: 1   MNEESSLHKESTSINDTMEEEV--EERDPESNPLNEPLLKRNRTLSSNPLALVGAKVSYI 60

Query: 91  ESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGY 150
           ESLDYEINENDLFK DWRSRSR QVLQYIF KWTLA LVGLLTG+IATLINLA+ENIAGY
Sbjct: 61  ESLDYEINENDLFKQDWRSRSRTQVLQYIFWKWTLAFLVGLLTGVIATLINLAVENIAGY 120

Query: 151 KLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDT 210
           KLL VV YI++ERYLMGF YF   NF+LTFVAAILCVCFAPTAAGPGIPEIKAYLNG+DT
Sbjct: 121 KLLAVVKYIQKERYLMGFLYFAGLNFILTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDT 180

Query: 211 PNMFGATTLIVKV 223
           PNM+GATTL VK+
Sbjct: 181 PNMYGATTLFVKI 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CLCB_ARATH1.4e-6776.33Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1[more]
CLCA_ARATH3.4e-6670.83Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2[more]
CLCC_ARATH5.4e-4052.41Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1[more]
CLCG_ARATH3.6e-3647.67Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 ... [more]
CLCD_ARATH5.6e-2141.79Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2[more]
Match NameE-valueIdentityDescription
I1Z8C8_CUCSA1.2e-9495.31Chloride channel protein OS=Cucumis sativus GN=ClCa PE=2 SV=1[more]
V4W2Z9_9ROSI1.3e-7781.25Chloride channel protein OS=Citrus clementina GN=CICLE_v10014341mg PE=3 SV=1[more]
A0A067DWD1_CITSI3.0e-7781.68Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0039661mg PE=4 ... [more]
A0A151RNH6_CAJCA3.9e-7781.87Chloride channel protein OS=Cajanus cajan GN=KK1_034477 PE=3 SV=1[more]
A0A0R0JZI4_SOYBN1.9e-7679.17Chloride channel protein OS=Glycine max GN=GLYMA_05G077100 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G27170.17.7e-6976.33 chloride channel B[more]
AT5G40890.11.9e-6770.83 chloride channel A[more]
AT5G49890.13.0e-4152.41 chloride channel C[more]
AT5G33280.12.0e-3747.67 Voltage-gated chloride channel family protein[more]
AT5G26240.13.2e-2241.79 chloride channel D[more]
Match NameE-valueIdentityDescription
gi|525507272|ref|NP_001267676.1|1.7e-9495.31chloride channel protein CLC-b-like [Cucumis sativus][more]
gi|659081469|ref|XP_008441347.1|2.9e-9495.31PREDICTED: chloride channel protein CLC-b-like [Cucumis melo][more]
gi|567909541|ref|XP_006447084.1|1.9e-7781.25hypothetical protein CICLE_v10014341mg [Citrus clementina][more]
gi|641823956|gb|KDO43322.1|4.2e-7781.68hypothetical protein CISIN_1g0039661mg, partial [Citrus sinensis][more]
gi|1012332629|gb|KYP44053.1|5.5e-7781.87Chloride channel protein CLC-b [Cajanus cajan][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005247voltage-gated chloride channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006821chloride transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR014743Cl-channel_core
IPR001807Cl-channel_volt-gated
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006821 chloride transport
biological_process GO:1903959 regulation of anion transmembrane transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005247 voltage-gated chloride channel activity
molecular_function GO:0005216 ion channel activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G003920.1Lsi03G003920.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001807Chloride channel, voltage gatedPFAMPF00654Voltage_CLCcoord: 177..222
score: 8.
IPR014743Chloride channel, coreGENE3DG3DSA:1.10.3080.10coord: 106..222
score: 1.1
IPR014743Chloride channel, coreunknownSSF81340Clc chloride channelcoord: 99..222
score: 1.44
NoneNo IPR availablePANTHERPTHR11689CHLORIDE CHANNELcoord: 38..222
score: 2.9E
NoneNo IPR availablePANTHERPTHR11689:SF67CHLORIDE CHANNEL PROTEIN CLC-A-RELATEDcoord: 38..222
score: 2.9E