Lsi03G003920 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATAGTATATTTTTAATATTTCAAAATTATTTATGAATATTGTTAGAGTAGCACATGGCACATGTGGGTATGCATGTTAAGACTAGTGGACCTCTTTTGTGGATAGAGTGGAATTTTCAATGGATAAAACTTATTAAACCATAATTGAAGTTTTCATATTATAAAATTATGAATGACCATATATTTCACTTTCTAGTTTCTAATGTTTACTCTTTTTTAAAAGTGATGAGTAACCCATCGATTGTTTTTAGTAAATATTCAATCTCATCTATTTTGTTTCTATCTTCATATTTCTAATATTATATTTTAATAAAAATATATCTCATGAAATTTCATATCAAATTCAATACATATATCTTAATAGCCAAGAATTAAAATGAATTTTCTACCTAAAATTTAGAGCAATTGTTTTAAATAGTAAAACTGCGGGAAATATTTATAAAAATAACAAAAATTCATTGTTTATCAATGATAAATAAATGTCTATCAATGTTTATTATTGATAGATAGTGATATTTTGTTATATTTATAAATAAGTTACTCATTTTACTATATTTGAAAACATCTCAAATTTATGAGTGATAATCAAATATCTCAAATGAGATGAAACTTCTCTTTTCAAATAAGTGGATTATCACAAATATTTTTTATCTATTGAAAATCTGAAACAACCCAAGCAACTTGAGTCCTGGGACAAGCTTCTTTTATTAAAAGAATAATAATAATAATAATAAAGTTATAAAGACAGAGAATAAATGTATTTTTGATATAAAAATGAAATATTTGGTGAAAGAAAGGTGCGATAATGGTAAACTAATGATCCAAATGGTCTAAAATTAAATGAGTAGCAAGTTGGCTTGTTGAAAACTATAGACAAATTATTGTCCCAACAAAAGAAAAAAAAAAAAAAGACCATAGATAAACCAAATATGAAAAGGAAAAAAAAGGGTAAAGAAGATGGGGGAAAATGAACAACTGGCCATTCAAATGACCACAAGGGAGAAAGTGACAAGACAAGTGCATGATTGAGATAACATTGTTGCATTAAAATCCTAGAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTTCACTGCACCAATGGATGAAAATTCAAGCCTGGTCACAGAATCAACTCTCACAAACACCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGTAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGTAAGAATACTACATAAAAACAAAACATCCCTTTTTTTTTCTTTCTTTTTTTTTCCTTTTTTGTTCAGTTCTCCAATTTCTTGAATTGGGTTTGGTTTGAATTCAGGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACACTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTCTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTAAGTACAAACCGATTAGACTTGGTTTTTTTCATCTGCAAAAACAGAAACTTAATGAATTTAAAATTTCTGGTTTTGAAATGATTCTGATTTAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTATTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCTTATCTCAATGGTATAGACACTCCTAATATGTTTGGTGCCACGACGTTGATCGTTAAGGTGCGTATGCCACACACTTTCTTGTTGAATCTCAGCGCAACGAACACCGTCGATCAAATCAACTTTGGATTGTCATCACTGTGTATTGCCATATCCTCATTCGCTTTTGATTGA ATGTATAAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTTCACTGCACCAATGGATGAAAATTCAAGCCTGGTCACAGAATCAACTCTCACAAACACCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGTAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACACTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTCTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTATTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCTTATCTCAATGGTATAGACACTCCTAATATGTTTGGTGCCACGACGTTGATCGTTAAGGTGCGTATGCCACACACTTTCTTGTTGAATCTCAGCGCAACGAACACCGTCGATCAAATCAACTTTGGATTGTCATCACTGTGTATTGCCATATCCTCATTCGCTTTTGATTGA ATGTATAAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTTCACTGCACCAATGGATGAAAATTCAAGCCTGGTCACAGAATCAACTCTCACAAACACCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGTAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACACTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTCTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTATTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCTTATCTCAATGGTATAGACACTCCTAATATGTTTGGTGCCACGACGTTGATCGTTAAGGTGCGTATGCCACACACTTTCTTGTTGAATCTCAGCGCAACGAACACCGTCGATCAAATCAACTTTGGATTGTCATCACTGTGTATTGCCATATCCTCATTCGCTTTTGATTGA MYKQRRSFALSSKPQNLTIFSSLCVHFTAPMDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKVRMPHTFLLNLSATNTVDQINFGLSSLCIAISSFAFD
BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 1.4e-67 Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1
BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2) HSP 1 Score: 253.1 bits (645), Expect = 3.4e-66 Identity = 136/192 (70.83%), Postives = 154/192 (80.21%), Query Frame = 1
BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 5.4e-40 Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 1
BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=3 SV=2) HSP 1 Score: 153.3 bits (386), Expect = 3.6e-36 Identity = 82/172 (47.67%), Postives = 110/172 (63.95%), Query Frame = 1
BLAST of Lsi03G003920 vs. Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2) HSP 1 Score: 102.8 bits (255), Expect = 5.6e-21 Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 1
BLAST of Lsi03G003920 vs. TrEMBL
Match: I1Z8C8_CUCSA (Chloride channel protein OS=Cucumis sativus GN=ClCa PE=2 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94 Identity = 183/192 (95.31%), Postives = 188/192 (97.92%), Query Frame = 1
BLAST of Lsi03G003920 vs. TrEMBL
Match: V4W2Z9_9ROSI (Chloride channel protein OS=Citrus clementina GN=CICLE_v10014341mg PE=3 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77 Identity = 156/192 (81.25%), Postives = 173/192 (90.10%), Query Frame = 1
BLAST of Lsi03G003920 vs. TrEMBL
Match: A0A067DWD1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0039661mg PE=4 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 3.0e-77 Identity = 156/191 (81.68%), Postives = 172/191 (90.05%), Query Frame = 1
BLAST of Lsi03G003920 vs. TrEMBL
Match: A0A151RNH6_CAJCA (Chloride channel protein OS=Cajanus cajan GN=KK1_034477 PE=3 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 3.9e-77 Identity = 158/193 (81.87%), Postives = 171/193 (88.60%), Query Frame = 1
BLAST of Lsi03G003920 vs. TrEMBL
Match: A0A0R0JZI4_SOYBN (Chloride channel protein OS=Glycine max GN=GLYMA_05G077100 PE=3 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 1.9e-76 Identity = 152/192 (79.17%), Postives = 167/192 (86.98%), Query Frame = 1
BLAST of Lsi03G003920 vs. TAIR10
Match: AT3G27170.1 (AT3G27170.1 chloride channel B) HSP 1 Score: 257.7 bits (657), Expect = 7.7e-69 Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 1
BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G40890.1 (AT5G40890.1 chloride channel A) HSP 1 Score: 253.1 bits (645), Expect = 1.9e-67 Identity = 136/192 (70.83%), Postives = 154/192 (80.21%), Query Frame = 1
BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G49890.1 (AT5G49890.1 chloride channel C) HSP 1 Score: 166.0 bits (419), Expect = 3.0e-41 Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 1
BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G33280.1 (AT5G33280.1 Voltage-gated chloride channel family protein) HSP 1 Score: 153.3 bits (386), Expect = 2.0e-37 Identity = 82/172 (47.67%), Postives = 110/172 (63.95%), Query Frame = 1
BLAST of Lsi03G003920 vs. TAIR10
Match: AT5G26240.1 (AT5G26240.1 chloride channel D) HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22 Identity = 56/134 (41.79%), Postives = 78/134 (58.21%), Query Frame = 1
BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|525507272|ref|NP_001267676.1| (chloride channel protein CLC-b-like [Cucumis sativus]) HSP 1 Score: 354.4 bits (908), Expect = 1.7e-94 Identity = 183/192 (95.31%), Postives = 188/192 (97.92%), Query Frame = 1
BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|659081469|ref|XP_008441347.1| (PREDICTED: chloride channel protein CLC-b-like [Cucumis melo]) HSP 1 Score: 353.6 bits (906), Expect = 2.9e-94 Identity = 183/192 (95.31%), Postives = 188/192 (97.92%), Query Frame = 1
BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|567909541|ref|XP_006447084.1| (hypothetical protein CICLE_v10014341mg [Citrus clementina]) HSP 1 Score: 297.7 bits (761), Expect = 1.9e-77 Identity = 156/192 (81.25%), Postives = 173/192 (90.10%), Query Frame = 1
BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|641823956|gb|KDO43322.1| (hypothetical protein CISIN_1g0039661mg, partial [Citrus sinensis]) HSP 1 Score: 296.6 bits (758), Expect = 4.2e-77 Identity = 156/191 (81.68%), Postives = 172/191 (90.05%), Query Frame = 1
BLAST of Lsi03G003920 vs. NCBI nr
Match: gi|1012332629|gb|KYP44053.1| (Chloride channel protein CLC-b [Cajanus cajan]) HSP 1 Score: 296.2 bits (757), Expect = 5.5e-77 Identity = 158/193 (81.87%), Postives = 171/193 (88.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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