Lsi03G002930 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G002930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Importin subunit beta-1
Location	chr03 : 3552239 .. 3553982 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCTATCAATGATATGCCTATGATACTTGATGATACAGACCGTTATACGACAAAGAAAGCAATTGTAGTAGGTGCATTATGTTCTTTGTATTTGATCGTACTTCATTCCATTGTGATGGCCATTGATTTTTATAAACATTGTATTCCATTAGCCACATGTATATCAATGTCTATTACTATCACACTTTGTATCGATTTTGAGGTATGAAGTGAACTTCGTTTTAATTTTATTTTATTCTCATTAACTGATATCATTATTTTTTTTAATACCCGCATCATCTCTCATCTTTGACTTCCCACAAAGAGTATGAAGATTTCCCATATGCATGGAGAGAGAATATCCAAAATTTCAATTTTTTTTTCTTTCGAGTTCATGCAATTCAAAACATCATTTGTTGAAGATGGTAGGTTTTGTATATGATCTATAATAATATCTCTCTTAATTCTTGTAAAATTCTTGTTAATTTTCATTCTAAAAAGGCTATGTTATGAATTTCTAATAATATTCTAGGCATAGTATTAAATTTTCCACTACAACAATTTTGACTTTAGATGTCAGTTGGCATTTCACAAACGATGACAGATTGACTATATGATGTCGGTTCTGGAAAAAAACGACTCATTTTACGGACTTTTTCGTACTTTTATAGAAATTTCACATACGATGACGGTTCATAACTGTCATCATCGCTGGAGATTTAATGGCGTTTTTAAACCGCCATCTAAAGTTAAAAAAGCGCAGGAAAAGATATTGAAAAATGCGTGCAAAATAGTTCTATATTGATGTCGGTTCTAAACCACCATCAAAACGGGCGGCTACAATGACGGTTTAAAACCGTCATCAATAGGTGGTTTATAAGAACATAAAACGATATCGTTTTGAGAAGGCTAATGATGTCGGTTTGGCTTTCAAAACACGACTTGGTTTTGGTCTAAGGATTTACCATTTCACAAACCATCAATAATTTTGGCTTCTTCACTCTTTTGCTGATTTCGTAGTTAGAGTTTCGGTAATTAACAAAGAAAGGATAGAGTGAGTGGGGGAAGATTGTGGTGAACAAAAACCTGTGGTGCTCTCTATTTTCTTGCTCAGGGTTTCGAAGATGTTGGCCCATCATCTCCTCTAACTCCATTTTTTCAAGAAATTGTCCAGTGCCTTTTGACTGTTATTCACAGAGAAGATGCTGGGGAATCACGTTTGACGACTGCTGTCATTGTTGAGGAGTACCAAGTTTGTGCTGTCACTGTTGGTGTGGTAGGGGACATACGCAGGGCTTTGCAGGATAAGATTTTGCCCTACTGTGATGGAATTATGACTCAGCTGCTCAAGAATTTATCTAGTGATTGATTGCATTGTTCTGTTAATTAAGCCCCCTATTTTCTCATGCTTTGGTGATATAGCATTGGCTATAGGGGAGAATTTTGATAAGTACTCGATGTATGCAATGCCCATGCTTCAAAGGGTAGCAGAGCTATCTGCACACACAACAGGTATTGATGATGAAATGACCGAGTATACAAATTCTTTGAATTAAAATGGGATTTTGGAGGCAAATTCAGGGATCTTCCAAGGTTTCAAGAGCTCTCCAAAAACTCAGCTTTTGGTCTCTTATGCCCCTCATATACTTCACTTCTTGGATATTATTTACATGAGAAAAGACATGGATGAAGTCTCTGTTATGAAAACTACCATTGGGGTCCTTGCAGATCTGATGGACACACTGGGGAGCATGTGCTAG

mRNA sequence

ATGTTATCTATCAATGATATGCCTATGATACTTGATGATACAGACCGTTATACGACAAAGAAAGCAATTGTAGTAGGTGCATTATGTTCTTTGTATTTGATCGTACTTCATTCCATTGTGATGGCCATTGATTTTTATAAACATTGTATTCCATTAGCCACATGTATATCAATGTCTATTACTATCACACTTTGTATCGATTTTGAGGGTTTCGAAGATGTTGGCCCATCATCTCCTCTAACTCCATTTTTTCAAGAAATTGTCCAGTGCCTTTTGACTGTTATTCACAGAGAAGATGCTGGGGAATCACGTTTGACGACTGCTGTCATTGTTGAGGAGTACCAAGTTTGTGCTGTCACTGTTGGTGTGGTAGGGGACATACGCAGGGCTTTGCAGGATAAGATTTTGCCCTACTGTGATGGAATTATGACTCAGCTGCTCAAGAATTTATCTAGGGAGAATTTTGATAAGTACTCGATGTATGCAATGCCCATGCTTCAAAGGGTAGCAGAGCTATCTGCACACACAACAGGGATCTTCCAAGGTTTCAAGAGCTCTCCAAAAACTCAGCTTTTGGTCTCTTATGCCCCTCATATACTTCACTTCTTGGATATTATTTACATGAGAAAAGACATGGATGAAGTCTCTGTTATGAAAACTACCATTGGGGTCCTTGCAGATCTGATGGACACACTGGGGAGCATGTGCTAG

Coding sequence (CDS)

ATGTTATCTATCAATGATATGCCTATGATACTTGATGATACAGACCGTTATACGACAAAGAAAGCAATTGTAGTAGGTGCATTATGTTCTTTGTATTTGATCGTACTTCATTCCATTGTGATGGCCATTGATTTTTATAAACATTGTATTCCATTAGCCACATGTATATCAATGTCTATTACTATCACACTTTGTATCGATTTTGAGGGTTTCGAAGATGTTGGCCCATCATCTCCTCTAACTCCATTTTTTCAAGAAATTGTCCAGTGCCTTTTGACTGTTATTCACAGAGAAGATGCTGGGGAATCACGTTTGACGACTGCTGTCATTGTTGAGGAGTACCAAGTTTGTGCTGTCACTGTTGGTGTGGTAGGGGACATACGCAGGGCTTTGCAGGATAAGATTTTGCCCTACTGTGATGGAATTATGACTCAGCTGCTCAAGAATTTATCTAGGGAGAATTTTGATAAGTACTCGATGTATGCAATGCCCATGCTTCAAAGGGTAGCAGAGCTATCTGCACACACAACAGGGATCTTCCAAGGTTTCAAGAGCTCTCCAAAAACTCAGCTTTTGGTCTCTTATGCCCCTCATATACTTCACTTCTTGGATATTATTTACATGAGAAAAGACATGGATGAAGTCTCTGTTATGAAAACTACCATTGGGGTCCTTGCAGATCTGATGGACACACTGGGGAGCATGTGCTAG

Protein sequence

MLSINDMPMILDDTDRYTTKKAIVVGALCSLYLIVLHSIVMAIDFYKHCIPLATCISMSITITLCIDFEGFEDVGPSSPLTPFFQEIVQCLLTVIHREDAGESRLTTAVIVEEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSRENFDKYSMYAMPMLQRVAELSAHTTGIFQGFKSSPKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGSMC

Homology

[Close]

BLAST of Lsi03G002930 vs. Swiss-Prot
Match: IMB1_ARATH (Importin subunit beta-1 OS=Arabidopsis thaliana GN=KPNB1 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.6e-41
Identity = 98/168 (58.33%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLK+LS                    
Sbjct: 660 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 719

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               E+FDKY  Y+MPMLQ  AELSAH+                      +GIFQGFK+S
Sbjct: 720 LAIGEDFDKYWRYSMPMLQSAAELSAHSAGADDEMTEYTNSLRNGILEAYSGIFQGFKNS 779

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
            KTQLL+ +APHIL FLD IYM KDMDEV VMKT IGVL DL DTLGS
Sbjct: 780 AKTQLLIPFAPHILQFLDSIYMEKDMDEV-VMKTAIGVLGDLADTLGS 826

[Close]

BLAST of Lsi03G002930 vs. Swiss-Prot
Match: IMB1_SCHPO (Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap95 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.5e-08
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSRENFDK 158
           +EYQ+C+V VG+VGD+ RAL  KILPYCD  MT+L+++L     D+
Sbjct: 653 QEYQLCSVAVGLVGDLARALNAKILPYCDDFMTRLVQDLQSSVLDR 698

[Close]

BLAST of Lsi03G002930 vs. Swiss-Prot
Match: IMB1_MOUSE (Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 113 EYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSREN 155
           EYQVC   VG+VGD+ RALQ  ILP+CD +M  LL+NL  EN
Sbjct: 663 EYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNEN 704

[Close]

BLAST of Lsi03G002930 vs. Swiss-Prot
Match: IMB1_HUMAN (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-07
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 113 EYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSREN 155
           EYQVC   VG+VGD+ RALQ  I+P+CD +M  LL+NL  EN
Sbjct: 663 EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNEN 704

[Close]

BLAST of Lsi03G002930 vs. Swiss-Prot
Match: IMB_XENLA (Importin subunit beta OS=Xenopus laevis GN=kpnb1 PE=1 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 113 EYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSREN 155
           EYQVC   VG+VGD+ RALQ  ILP+CD +M  LL+NL  EN
Sbjct: 663 EYQVCLAAVGLVGDLCRALQSNILPFCDEMMQFLLENLGNEN 704

[Close]

BLAST of Lsi03G002930 vs. TrEMBL
Match: A0A0A0KJT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139310 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-44
Identity = 109/168 (64.88%), Postives = 112/168 (66.67%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGDI RAL+DKILPYCDGIMTQLLKNLS                    
Sbjct: 661 EEYQVCAVTVGVVGDICRALEDKILPYCDGIMTQLLKNLSSDQLHRSVKPPIFSCFGDIA 720

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQR AELSAHT                      +GIFQGFKSS
Sbjct: 721 LAIGENFEKYLMYAMPMLQRAAELSAHTAGIDDEMTEYTNSLRNGILEAYSGIFQGFKSS 780

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLLV YAPHIL FLD IYMRKDMDEV VMKT IGVL DL DTLGS
Sbjct: 781 PKTQLLVPYAPHILQFLDSIYMRKDMDEV-VMKTAIGVLGDLADTLGS 827

[Close]

BLAST of Lsi03G002930 vs. TrEMBL
Match: A0A0A0KQ48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139290 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.6e-43
Identity = 106/168 (63.10%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLKNLS                    
Sbjct: 661 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKNLSSDQLHRSVKPPIFSCFGDIA 720

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQR AELSAHT                      +GIFQGFKSS
Sbjct: 721 LAIGENFEKYLMYAMPMLQRAAELSAHTAGADDEMTEYTNSLRNGILEAYSGIFQGFKSS 780

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLL+ YAPHIL FLD IYM KDMDEV VMKT IGVL DL DTLGS
Sbjct: 781 PKTQLLIPYAPHILQFLDSIYMGKDMDEV-VMKTAIGVLGDLADTLGS 827

[Close]

BLAST of Lsi03G002930 vs. TrEMBL
Match: K4BI70_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 102/168 (60.71%), Postives = 110/168 (65.48%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLK+LS                    
Sbjct: 744 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCLGDIA 803

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQ  AELSAHT                      +GIFQGFK+S
Sbjct: 804 LAIGENFEKYLMYAMPMLQSAAELSAHTSGADDEMVEYTNLLRNGILEAYSGIFQGFKNS 863

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLL+ YAPHIL FLD IYM KDMD+V VMKT IGVL DL DTLGS
Sbjct: 864 PKTQLLIPYAPHILQFLDSIYMEKDMDDV-VMKTAIGVLGDLADTLGS 910

[Close]

BLAST of Lsi03G002930 vs. TrEMBL
Match: A0A0V0IY23_SOLCH (Putative importin subunit beta-1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 102/168 (60.71%), Postives = 110/168 (65.48%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLK+LS                    
Sbjct: 661 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCLGDIA 720

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQ  AELSAHT                      +GIFQGFK+S
Sbjct: 721 LAIGENFEKYLMYAMPMLQSAAELSAHTSGADDEMVEYTNLLRNGILEAYSGIFQGFKNS 780

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLL+ YAPHIL FLD IYM KDMD+V VMKT IGVL DL DTLGS
Sbjct: 781 PKTQLLIPYAPHILQFLDSIYMEKDMDDV-VMKTAIGVLGDLADTLGS 827

[Close]

BLAST of Lsi03G002930 vs. TrEMBL
Match: M1BL76_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018525 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 102/168 (60.71%), Postives = 110/168 (65.48%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLK+LS                    
Sbjct: 661 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCLGDIA 720

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQ  AELSAHT                      +GIFQGFK+S
Sbjct: 721 LAIGENFEKYLMYAMPMLQSAAELSAHTSGADDEMVEYTNLLRNGILEAYSGIFQGFKNS 780

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLL+ YAPHIL FLD IYM KDMD+V VMKT IGVL DL DTLGS
Sbjct: 781 PKTQLLIPYAPHILQFLDSIYMEKDMDDV-VMKTAIGVLGDLADTLGS 827

[Close]

BLAST of Lsi03G002930 vs. TAIR10
Match: AT5G53480.1 (AT5G53480.1 ARM repeat superfamily protein)

HSP 1 Score: 168.7 bits (426), Expect = 4.3e-42
Identity = 98/168 (58.33%), Postives = 108/168 (64.29%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLK+LS                    
Sbjct: 660 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 719

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               E+FDKY  Y+MPMLQ  AELSAH+                      +GIFQGFK+S
Sbjct: 720 LAIGEDFDKYWRYSMPMLQSAAELSAHSAGADDEMTEYTNSLRNGILEAYSGIFQGFKNS 779

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
            KTQLL+ +APHIL FLD IYM KDMDEV VMKT IGVL DL DTLGS
Sbjct: 780 AKTQLLIPFAPHILQFLDSIYMEKDMDEV-VMKTAIGVLGDLADTLGS 826

[Close]

BLAST of Lsi03G002930 vs. TAIR10
Match: AT3G08943.1 (AT3G08943.1 ARM repeat superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-17
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVC++TVGV+GDI RAL +KILP+CD IM  L++NL                     
Sbjct: 663 EEYQVCSITVGVIGDICRALDEKILPFCDQIMGLLIQNLQSGALHRSVKPPIFSCFGDIA 722

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
                +F++Y   A+ ++Q  A++ A                        +GI QGFK +
Sbjct: 723 LAIGAHFERYVAPAVQIMQGAAQVCAQMDTLDEELMDYANQLRRSIFEAYSGILQGFKDA 782

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLG 234
            K +L++ YA H+L F++++      DE SV K  +  + DL D +G
Sbjct: 783 -KAELMMPYAQHLLQFVELVSKDSLRDE-SVTKAAVAAMGDLADVVG 827

[Close]

BLAST of Lsi03G002930 vs. TAIR10
Match: AT3G08947.1 (AT3G08947.1 ARM repeat superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-16
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVC++TVGV+GDI RAL +KILP+CD IM  L++NL                     
Sbjct: 663 EEYQVCSITVGVLGDICRALDEKILPFCDQIMGLLIQNLQSGALHRSVKPPIFSCFGDIA 722

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
                +F++Y   A+ ++Q  A++ A                        +GI QGFK +
Sbjct: 723 LAIGAHFERYVAPAVQIMQGAAQVCAQMDTLDEELMDYANQLRRSIFEAYSGILQGFKDT 782

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLG 234
            K +L++ YA H+L F++++      DE SV K  +  + DL D +G
Sbjct: 783 -KAELMMPYAQHLLQFVELVSKDPLRDE-SVTKAAVAAMGDLADVVG 827

[Close]

BLAST of Lsi03G002930 vs. NCBI nr
Match: gi|778698836|ref|XP_004145935.2| (PREDICTED: importin subunit beta-1 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 109/168 (64.88%), Postives = 112/168 (66.67%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGDI RAL+DKILPYCDGIMTQLLKNLS                    
Sbjct: 661 EEYQVCAVTVGVVGDICRALEDKILPYCDGIMTQLLKNLSSDQLHRSVKPPIFSCFGDIA 720

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQR AELSAHT                      +GIFQGFKSS
Sbjct: 721 LAIGENFEKYLMYAMPMLQRAAELSAHTAGIDDEMTEYTNSLRNGILEAYSGIFQGFKSS 780

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLLV YAPHIL FLD IYMRKDMDEV VMKT IGVL DL DTLGS
Sbjct: 781 PKTQLLVPYAPHILQFLDSIYMRKDMDEV-VMKTAIGVLGDLADTLGS 827

[Close]

BLAST of Lsi03G002930 vs. NCBI nr
Match: gi|659074458|ref|XP_008437616.1| (PREDICTED: importin subunit beta-1 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 109/168 (64.88%), Postives = 112/168 (66.67%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGDI RAL+DKILPYCDGIMTQLLKNLS                    
Sbjct: 479 EEYQVCAVTVGVVGDICRALEDKILPYCDGIMTQLLKNLSSDQLHRSVKPPIFSCFGDIA 538

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQR AELSAHT                      +GIFQGFKSS
Sbjct: 539 LAIGENFEKYLMYAMPMLQRAAELSAHTAGIDDEMTEYTNSLRNGILEAYSGIFQGFKSS 598

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLLV YAPHIL FLD IYMRKDMDEV VMKT IGVL DL DTLGS
Sbjct: 599 PKTQLLVPYAPHILQFLDSIYMRKDMDEV-VMKTAIGVLGDLADTLGS 645

[Close]

BLAST of Lsi03G002930 vs. NCBI nr
Match: gi|778698828|ref|XP_011654605.1| (PREDICTED: importin subunit beta-1 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 106/168 (63.10%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLKNLS                    
Sbjct: 661 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKNLSSDQLHRSVKPPIFSCFGDIA 720

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQR AELSAHT                      +GIFQGFKSS
Sbjct: 721 LAIGENFEKYLMYAMPMLQRAAELSAHTAGADDEMTEYTNSLRNGILEAYSGIFQGFKSS 780

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLL+ YAPHIL FLD IYM KDMDEV VMKT IGVL DL DTLGS
Sbjct: 781 PKTQLLIPYAPHILQFLDSIYMGKDMDEV-VMKTAIGVLGDLADTLGS 827

[Close]

BLAST of Lsi03G002930 vs. NCBI nr
Match: gi|659074683|ref|XP_008437738.1| (PREDICTED: LOW QUALITY PROTEIN: importin subunit beta-1-like, partial [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 105/168 (62.50%), Postives = 110/168 (65.48%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGD+ RAL+DKILPYCDGIMTQLLKNLS                    
Sbjct: 182 EEYQVCAVTVGVVGDVCRALEDKILPYCDGIMTQLLKNLSSDQLHRSVKPPIFSCFGDIA 241

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MY MPMLQR AELSAHT                      +GIFQGFKSS
Sbjct: 242 LAIGENFEKYLMYGMPMLQRAAELSAHTAGADDEMTEYTNSLRNGILEAYSGIFQGFKSS 301

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLL+ YAPHIL FLD IYM KDMDEV VMKT IGVL DL DTLGS
Sbjct: 302 PKTQLLIPYAPHILQFLDSIYMGKDMDEV-VMKTAIGVLGDLADTLGS 348

[Close]

BLAST of Lsi03G002930 vs. NCBI nr
Match: gi|747059178|ref|XP_011075956.1| (PREDICTED: importin subunit beta-1-like [Sesamum indicum])

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 103/168 (61.31%), Postives = 110/168 (65.48%), Query Frame = 1


Query: 112 EEYQVCAVTVGVVGDIRRALQDKILPYCDGIMTQLLKNLSR------------------- 171
           EEYQVCAVTVGVVGDI RAL+DKILPYCDGIMTQLLK+LS                    
Sbjct: 659 EEYQVCAVTVGVVGDICRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 718

Query: 172 ----ENFDKYSMYAMPMLQRVAELSAHT----------------------TGIFQGFKSS 231
               ENF+KY MYAMPMLQ  AELSAHT                      +GIFQGFK+S
Sbjct: 719 LAIGENFEKYLMYAMPMLQSAAELSAHTSGADDEMIEYTNLLRNGILEAYSGIFQGFKNS 778

Query: 232 PKTQLLVSYAPHILHFLDIIYMRKDMDEVSVMKTTIGVLADLMDTLGS 235
           PKTQLL+ YAPHIL FLD IYM KDMD+V VMKT IGVL DL DTLGS
Sbjct: 779 PKTQLLIPYAPHILQFLDSIYMEKDMDDV-VMKTAIGVLGDLADTLGS 825

The following BLAST results are available for this feature:

BLAST of Lsi03G002930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IMB1_ARATH	7.6e-41	58.33	Importin subunit beta-1 OS=Arabidopsis thaliana GN=KPNB1 PE=1 SV=1	[more]
IMB1_SCHPO	8.5e-08	54.35	Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	[more]
IMB1_MOUSE	1.5e-07	61.90	Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2	[more]
IMB1_HUMAN	2.5e-07	59.52	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	[more]
IMB_XENLA	3.2e-07	61.90	Importin subunit beta OS=Xenopus laevis GN=kpnb1 PE=1 SV=3	[more]

BLAST of Lsi03G002930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT4_CUCSA	2.3e-44	64.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139310 PE=4 SV=1	[more]
A0A0A0KQ48_CUCSA	2.6e-43	63.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139290 PE=4 SV=1	[more]
K4BI70_SOLLC	1.4e-41	60.71	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0IY23_SOLCH	1.4e-41	60.71	Putative importin subunit beta-1-like OS=Solanum chacoense PE=4 SV=1	[more]
M1BL76_SOLTU	1.4e-41	60.71	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018525 PE=4 SV=1	[more]

BLAST of Lsi03G002930 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53480.1	4.3e-42	58.33	ARM repeat superfamily protein	[more]
AT3G08943.1	4.8e-17	32.93	ARM repeat superfamily protein	[more]
AT3G08947.1	1.1e-16	32.93	ARM repeat superfamily protein	[more]

BLAST of Lsi03G002930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698836\|ref\|XP_004145935.2\|	3.3e-44	64.88	PREDICTED: importin subunit beta-1 [Cucumis sativus]	[more]
gi\|659074458\|ref\|XP_008437616.1\|	3.3e-44	64.88	PREDICTED: importin subunit beta-1 [Cucumis melo]	[more]
gi\|778698828\|ref\|XP_011654605.1\|	3.7e-43	63.10	PREDICTED: importin subunit beta-1 [Cucumis sativus]	[more]
gi\|659074683\|ref\|XP_008437738.1\|	1.1e-42	62.50	PREDICTED: LOW QUALITY PROTEIN: importin subunit beta-1-like, partial [Cucumis m...	[more]
gi\|747059178\|ref\|XP_011075956.1\|	1.5e-41	61.31	PREDICTED: importin subunit beta-1-like [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006913	nucleocytoplasmic transport

Vocabulary: **INTERPRO**
Term	Definition
IPR027140	KPNB1_plant
IPR016024	ARM-type_fold
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002930.1	Lsi03G002930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 81..234 score: 1.4
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 80..233 score: 6.
IPR027140	Importin subunit beta-1, plants	PANTHER	PTHR10527:SF19	ARMADILLO/BETA-CATENIN-LIKE REPEAT-CONTAINING PROTEIN	coord: 117..235 score: 4.6
None	No IPR available	PANTHER	PTHR10527	IMPORTIN BETA	coord: 117..235 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G002930	Wild cucumber (PI 183967)	cpilsiB280
Lsi03G002930	Wild cucumber (PI 183967)	cpilsiB451
Lsi03G002930	Cucumber (Chinese Long) v2	culsiB282
Lsi03G002930	Cucumber (Chinese Long) v2	culsiB361
Lsi03G002930	Cucumber (Chinese Long) v2	culsiB444
Lsi03G002930	Melon (DHL92) v3.5.1	lsimeB245
Lsi03G002930	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G002930	Melon (DHL92) v3.5.1	lsimeB276
Lsi03G002930	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G002930	Watermelon (Charleston Gray)	lsiwcgB240
Lsi03G002930	Watermelon (Charleston Gray)	lsiwcgB250
Lsi03G002930	Watermelon (97103) v1	lsiwmB250
Lsi03G002930	Watermelon (97103) v1	lsiwmB253
Lsi03G002930	Watermelon (97103) v1	lsiwmB266
Lsi03G002930	Watermelon (97103) v1	lsiwmB277
Lsi03G002930	Cucumber (Gy14) v2	cgyblsiB262
Lsi03G002930	Cucumber (Gy14) v2	cgyblsiB409
Lsi03G002930	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G002930	Melon (DHL92) v3.6.1	lsimedB289
Lsi03G002930	Silver-seed gourd	carlsiB017
Lsi03G002930	Silver-seed gourd	carlsiB236
Lsi03G002930	Silver-seed gourd	carlsiB505
Lsi03G002930	Silver-seed gourd	carlsiB603
Lsi03G002930	Cucumber (Chinese Long) v3	cuclsiB303
Lsi03G002930	Cucumber (Chinese Long) v3	cuclsiB386
Lsi03G002930	Cucumber (Chinese Long) v3	cuclsiB473
Lsi03G002930	Watermelon (97103) v2	lsiwmbB222
Lsi03G002930	Watermelon (97103) v2	lsiwmbB234
Lsi03G002930	Watermelon (97103) v2	lsiwmbB243
Lsi03G002930	Wax gourd	lsiwgoB322
Lsi03G002930	Bottle gourd (USVL1VR-Ls)	lsilsiB072
Lsi03G002930	Bottle gourd (USVL1VR-Ls)	lsilsiB128
Lsi03G002930	Cucumber (Gy14) v1	cgylsiB216
Lsi03G002930	Cucumber (Gy14) v1	cgylsiB231
Lsi03G002930	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G002930	Cucurbita maxima (Rimu)	cmalsiB610
Lsi03G002930	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G002930	Cucurbita maxima (Rimu)	cmalsiB659
Lsi03G002930	Cucurbita maxima (Rimu)	cmalsiB660
Lsi03G002930	Cucurbita maxima (Rimu)	cmalsiB752
Lsi03G002930	Cucurbita maxima (Rimu)	cmalsiB801
Lsi03G002930	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G002930	Cucurbita moschata (Rifu)	cmolsiB598
Lsi03G002930	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G002930	Cucurbita moschata (Rifu)	cmolsiB648
Lsi03G002930	Cucurbita moschata (Rifu)	cmolsiB746
Lsi03G002930	Cucurbita moschata (Rifu)	cmolsiB788
Lsi03G002930	Cucurbita pepo (Zucchini)	cpelsiB064
Lsi03G002930	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G002930	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G002930	Cucurbita pepo (Zucchini)	cpelsiB341