Lsi03G002390 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G002390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	HEAT repeat-containing protein 5B
Location	chr03 : 2976160 .. 2976636 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGCCGTCGACTTTCGAAACTTCAATCCCATTCAATGGAGGACTTCTCAATTCTTGCGATTCCCAGCCCAGTGCATATTAATTACTGATTGCCATCGTCGACTATTGCTGGTGACTCAAATGTTGTCTGGACTTGTTTTTATTTATTTTATTTTATTATTTTTAAAAATTTTATTTTATTCATGTTTCGGCTAGAGCAATTATTTAATGTTTGAAATGAACATTGCAAATTTCAGGAATCTATACTGTTGTGGCAAAGAAAATGCGAGGAAGCACTCTATTCTCTGCTCATTCTTGGTGCCAGACGACCGGTGCGTCATCTCGCATCAGTAGTAATGGCAAGAATCATAACCAAGGGAGATACAATTTCGGTGTATTCACGAGTTAGTAGTCTTCAAGGGTTTCTATCTGATGGGAAAAGGAATGAACCTCATAAGATTGCTGGTTTGTTACGAAAGCTTGAACTTGATTAG

mRNA sequence

ATGCATAGCCGTCGACTTTCGAAACTTCAATCCCATTCAATGGAGGACTTCTCAATTCTTGCGATTCCCAGCCCAGAATCTATACTGTTGTGGCAAAGAAAATGCGAGGAAGCACTCTATTCTCTGCTCATTCTTGGTGCCAGACGACCGGTGCGTCATCTCGCATCAGTAGTAATGGCAAGAATCATAACCAAGGGAGATACAATTTCGGTGTATTCACGAGTTAGTAGTCTTCAAGGGTTTCTATCTGATGGGAAAAGGAATGAACCTCATAAGATTGCTGGTTTGTTACGAAAGCTTGAACTTGATTAG

Coding sequence (CDS)

ATGCATAGCCGTCGACTTTCGAAACTTCAATCCCATTCAATGGAGGACTTCTCAATTCTTGCGATTCCCAGCCCAGAATCTATACTGTTGTGGCAAAGAAAATGCGAGGAAGCACTCTATTCTCTGCTCATTCTTGGTGCCAGACGACCGGTGCGTCATCTCGCATCAGTAGTAATGGCAAGAATCATAACCAAGGGAGATACAATTTCGGTGTATTCACGAGTTAGTAGTCTTCAAGGGTTTCTATCTGATGGGAAAAGGAATGAACCTCATAAGATTGCTGGTTTGTTACGAAAGCTTGAACTTGATTAG

Protein sequence

MHSRRLSKLQSHSMEDFSILAIPSPESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDGKRNEPHKIAGLLRKLELD

Homology

[Close]

BLAST of Lsi03G002390 vs. TrEMBL
Match: W9RXJ4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008656 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-26
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 27  SILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDGK 86
           SILLWQRKCE+ALYSLLILGARRPVRHLASV MA+II+KGD+IS+YSRVSSLQGFLSDGK
Sbjct: 57  SILLWQRKCEDALYSLLILGARRPVRHLASVAMAKIISKGDSISIYSRVSSLQGFLSDGK 116

Query: 87  RNEPHKIAG 96
           RNEP K+AG
Sbjct: 117 RNEPQKVAG 125

[Close]

BLAST of Lsi03G002390 vs. TrEMBL
Match: A0A067EUX8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0013683mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.0e-26
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 26 ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
          ESILLWQRKCE+ALYSLLILGARRPVRHLASV M RII+KGD ISVYSRVSSLQGFLSDG
Sbjct: 1  ESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG 60

Query: 86 KRNEPHKIAG 96
          K++EP K+AG
Sbjct: 61 KKSEPQKVAG 70

[Close]

BLAST of Lsi03G002390 vs. TrEMBL
Match: V4S945_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011943mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.0e-26
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ESILLWQRKCE+ALYSLLILGARRPVRHLASV M RII+KGD ISVYSRVSSLQGFLSDG
Sbjct: 56  ESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDG 115

Query: 86  KRNEPHKIAG 96
           K++EP K+AG
Sbjct: 116 KKSEPQKVAG 125

[Close]

BLAST of Lsi03G002390 vs. TrEMBL
Match: F6HSF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g03170 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.0e-26
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ESILLWQRKCE+ALYSLLILGARRPVRHLASV MARII+KGDTIS+YSR S+LQGFLSDG
Sbjct: 56  ESILLWQRKCEDALYSLLILGARRPVRHLASVAMARIISKGDTISIYSRASTLQGFLSDG 115

Query: 86  KRNEPHKIAG 96
           KR+EP ++AG
Sbjct: 116 KRSEPQRLAG 125

[Close]

BLAST of Lsi03G002390 vs. TrEMBL
Match: A0A0D2LQG1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G080300 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ESILLWQRKCE+ALYSLLILGA+RPVRHLASV MARII+KGD+IS+YSR SSLQGFLSDG
Sbjct: 57  ESILLWQRKCEDALYSLLILGAKRPVRHLASVAMARIISKGDSISIYSRASSLQGFLSDG 116

Query: 86  KRNEPHKIAG 96
           KR+EP +IAG
Sbjct: 117 KRSEPQRIAG 126

[Close]

BLAST of Lsi03G002390 vs. TAIR10
Match: AT1G67140.3 (AT1G67140.3 HEAT repeat-containing protein)

HSP 1 Score: 110.2 bits (274), Expect = 7.9e-25
Identity = 52/70 (74.29%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ES+L+ QRKCE+ALYSL+ LGARRPVRHLASV MA+II+ GD+IS+YSR SSLQGFLSDG
Sbjct: 56  ESLLVTQRKCEDALYSLVTLGARRPVRHLASVAMAKIISNGDSISIYSRASSLQGFLSDG 115

Query: 86  KRNEPHKIAG 96
           KR++P ++AG
Sbjct: 116 KRSDPQRVAG 125

[Close]

BLAST of Lsi03G002390 vs. NCBI nr
Match: gi|659119089|ref|XP_008459470.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X2 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARII+KGDTISVYSRVSSLQGFLSDG
Sbjct: 56  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIISKGDTISVYSRVSSLQGFLSDG 115

Query: 86  KRNEPHKIAGLLRKL 101
           KRNEPHK+AG+ + L
Sbjct: 116 KRNEPHKLAGIAQCL 130

[Close]

BLAST of Lsi03G002390 vs. NCBI nr
Match: gi|659119091|ref|XP_008459471.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X3 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARII+KGDTISVYSRVSSLQGFLSDG
Sbjct: 56  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIISKGDTISVYSRVSSLQGFLSDG 115

Query: 86  KRNEPHKIAGLLRKL 101
           KRNEPHK+AG+ + L
Sbjct: 116 KRNEPHKLAGIAQCL 130

[Close]

BLAST of Lsi03G002390 vs. NCBI nr
Match: gi|659119087|ref|XP_008459469.1| (PREDICTED: HEAT repeat-containing protein 5B isoform X1 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARII+KGDTISVYSRVSSLQGFLSDG
Sbjct: 56  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIISKGDTISVYSRVSSLQGFLSDG 115

Query: 86  KRNEPHKIAGLLRKL 101
           KRNEPHK+AG+ + L
Sbjct: 116 KRNEPHKLAGIAQCL 130

[Close]

BLAST of Lsi03G002390 vs. NCBI nr
Match: gi|778707626|ref|XP_011656034.1| (PREDICTED: HEAT repeat-containing protein 5B [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 26  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDG 85
           ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARII KGDTISVYSRVSSLQGFLSDG
Sbjct: 56  ESILLWQRKCEEALYSLLILGARRPVRHLASVVMARIIFKGDTISVYSRVSSLQGFLSDG 115

Query: 86  KRNEPHKIAGLLRKL 101
           KRNEPHKIAG+ + L
Sbjct: 116 KRNEPHKIAGIAQCL 130

[Close]

BLAST of Lsi03G002390 vs. NCBI nr
Match: gi|703127333|ref|XP_010103804.1| (hypothetical protein L484_008656 [Morus notabilis])

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-26
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 27  SILLWQRKCEEALYSLLILGARRPVRHLASVVMARIITKGDTISVYSRVSSLQGFLSDGK 86
           SILLWQRKCE+ALYSLLILGARRPVRHLASV MA+II+KGD+IS+YSRVSSLQGFLSDGK
Sbjct: 57  SILLWQRKCEDALYSLLILGARRPVRHLASVAMAKIISKGDSISIYSRVSSLQGFLSDGK 116

Query: 87  RNEPHKIAG 96
           RNEP K+AG
Sbjct: 117 RNEPQKVAG 125

The following BLAST results are available for this feature:

BLAST of Lsi03G002390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G002390 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RXJ4_9ROSA	2.8e-26	88.41	Uncharacterized protein OS=Morus notabilis GN=L484_008656 PE=4 SV=1	[more]
A0A067EUX8_CITSI	8.0e-26	87.14	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0013683mg PE=4 ...	[more]
V4S945_9ROSI	8.0e-26	87.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011943mg PE=4 SV=1	[more]
F6HSF0_VITVI	8.0e-26	85.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g03170 PE=4 SV=...	[more]
A0A0D2LQG1_GOSRA	1.4e-25	85.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G080300 PE=4 SV=1	[more]

BLAST of Lsi03G002390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67140.3	7.9e-25	74.29	HEAT repeat-containing protein	[more]

BLAST of Lsi03G002390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119089\|ref\|XP_008459470.1\|	1.3e-29	92.00	PREDICTED: HEAT repeat-containing protein 5B isoform X2 [Cucumis melo]	[more]
gi\|659119091\|ref\|XP_008459471.1\|	1.3e-29	92.00	PREDICTED: HEAT repeat-containing protein 5B isoform X3 [Cucumis melo]	[more]
gi\|659119087\|ref\|XP_008459469.1\|	1.3e-29	92.00	PREDICTED: HEAT repeat-containing protein 5B isoform X1 [Cucumis melo]	[more]
gi\|778707626\|ref\|XP_011656034.1\|	1.7e-29	93.33	PREDICTED: HEAT repeat-containing protein 5B [Cucumis sativus]	[more]
gi\|703127333\|ref\|XP_010103804.1\|	4.0e-26	88.41	hypothetical protein L484_008656 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G002390.1	Lsi03G002390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21663	HYPOTHETICAL HEAT DOMAIN-CONTAINING	coord: 18..94 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G002390	Csa5G644570	Cucumber (Chinese Long) v2	culsiB353
Lsi03G002390	CSPI05G30090	Wild cucumber (PI 183967)	cpilsiB357
Lsi03G002390	Cla016448	Watermelon (97103) v1	lsiwmB278
Lsi03G002390	ClCG11G005430	Watermelon (Charleston Gray)	lsiwcgB226

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G002390	Melon (DHL92) v3.6.1	lsimedB243
Lsi03G002390	Silver-seed gourd	carlsiB017
Lsi03G002390	Silver-seed gourd	carlsiB019
Lsi03G002390	Silver-seed gourd	carlsiB236
Lsi03G002390	Cucumber (Chinese Long) v3	cuclsiB378
Lsi03G002390	Watermelon (97103) v2	lsiwmbB222
Lsi03G002390	Wax gourd	lsiwgoB310
Lsi03G002390	Wax gourd	lsiwgoB322
Lsi03G002390	Cucumber (Gy14) v1	cgylsiB387
Lsi03G002390	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G002390	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G002390	Cucurbita maxima (Rimu)	cmalsiB668
Lsi03G002390	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G002390	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G002390	Cucurbita moschata (Rifu)	cmolsiB657
Lsi03G002390	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G002390	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G002390	Cucurbita pepo (Zucchini)	cpelsiB350
Lsi03G002390	Melon (DHL92) v3.5.1	lsimeB233
Lsi03G002390	Cucumber (Gy14) v2	cgyblsiB325