Lsi03G001670 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G001670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 2237418 .. 2238960 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACGTAAATGACTGAGCATGGAGATTGCTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGCCCAATGGAATTTTCGAGTCGATTGCTTGCTAAGAGTGGGCCAATTGGGAGAATGCAAGGAGCTAAGCTGAAGATTTCTCCTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTGTTATTTCTTAAGCAAACTTGAAATATAATTTTCTCTGTCTCTTTGTCGCCAACGCATGCCCAAACCAATCTTTCCGTTCTGGTTGTGGGTACTGATGCTGCTAATTTGATCTCCTCGCTTTTCAGTAAGGTACCTGTTGATATTGAAACTAATCAAAAACTGCTAATCTTCAAGCGTTATGAACAAATTCTATGTTGATAATGTGCCTATTGATTAGATTGTTTCAAATTCTTTATGGGGCTAAGAAAGTGATTTTGTTTGTCTGGCTTGCCTAGTTTAATCTCATAGCTAAGGTTAAGTCAATGAACGACTAAGTTTGACATATGATTGATTTTGTCTGAATAAAAAAACTTGTGGATGCACTCATTAACTTCGATTAATAAACAGTTGAAACCCATCTTACCATCAGAATCAATTAGTTTTTCTTCAATCAGCTTTGGGATGCTAAATTGCATAGCCAACAATGCCGCAGCTGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACTGGTAATTTCATTGCCACCAAATCCATTGATTGTGTTTATCAGCTCTTCTAACTTCATGGGCATGACTTGCAACATTGTTTCAGTTAATTTACCAAGATCGTTTCTATCCTCCCCAGGTTTCATGCCATCAGGGAGTGAAACTAGATGAATATGACCATCCCCTGTATGATTTGTTTCTCCTAGAGCATCCACGACACGTTTGTGATTGTACTCTGTGTTCACGAACGTGATTTCGAACCCATGTTTGGCCAAGCACAAGGAGATTTCCAATAAGGGGATGACATGGCCTTGTGCTGGATAAGGTATGGCCAAGATGTGCCCACTGCCCATTTTGCTTCTGTAATCTAAATTTTACTTTCTTTCCAATGGGTTGCAGCTTCTAAGCTTCAATATATGACTATATATACACAACCACAAATGGAATTGTCTCTGCGTGTATGCGCCAGATTCTTCATTCAACATGTTGCAATTGTTGATACCAAGATAAACAATTGTAAATTTATTTCTCTTTTATGTCTATAGTCTAGCCACTTTGTCATTTTTGTATATGATGGTAAGCTGGCATTGGTTATATCTCATTGTTGTTTATATTCACCATCTACCTTTTGGTATTGGTTTCCAATTTGTTATTGACTGATTCTGTTTAGAAAAGTTTATTAATGTTTTTACTCTCTTGTTTTACTTTCTTTTCTTGGATTTGTATGCTGTATTATTTAAGATTCAGGCAGGCTTAGAGTTCTAATGGCCATGGAGAGTTTAACTCCACAGGAGTGA

mRNA sequence

ATGCAACATTGCTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGCCCAATGGAATTTTCGAGTCGATTGCTTGCTAAGAGTGGGCCAATTGGGAGAATGCAAGGAGCTAAGCTGAAGATTTCTCCTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTCTTTGGGATGCTAAATTGCATAGCCAACAATGCCGCAGCTGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACTGTCTAGCCACTTTGTCATTTTTGTATATGATGGCAGGCTTAGAGTTCTAATGGCCATGGAGAGTTTAACTCCACAGGAGTGA

Coding sequence (CDS)

ATGCAACATTGCTGGTCGAGCCATTTCAGGCAAGTTGAATCTTCTGGCCAGAAGTGCCCAATGGAATTTTCGAGTCGATTGCTTGCTAAGAGTGGGCCAATTGGGAGAATGCAAGGAGCTAAGCTGAAGATTTCTCCTTCAAGGTCATATACTGTATTGCAGATAACCCAATCTGCCACTTCTACTGCTTTCTTTGGGATGCTAAATTGCATAGCCAACAATGCCGCAGCTGCTGGCCAGAAGGCGACTCGCCGGATTCTCATCTTCTCAGCAACTTCTAGAGCCCACCCAAGATTCTCATCAGCAATAACACTGTCTAGCCACTTTGTCATTTTTGTATATGATGGCAGGCTTAGAGTTCTAATGGCCATGGAGAGTTTAACTCCACAGGAGTGA

Protein sequence

MQHCWSSHFRQVESSGQKCPMEFSSRLLAKSGPIGRMQGAKLKISPSRSYTVLQITQSATSTAFFGMLNCIANNAAAAGQKATRRILIFSATSRAHPRFSSAITLSSHFVIFVYDGRLRVLMAMESLTPQE
Homology
[Close]
BLAST of Lsi03G001670 vs. TrEMBL
Match: A0A0A0KSG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638450 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.2e-11
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 

Query: 1  MQHCWSSHFRQVESSGQKCPMEFSSRLLAKSGPIGRMQGAKLKISPSRSYTV 53
          M  CW    RQVESSGQKCP+EFSSR LAKSGPIGR++GAKLKIS SR+++V
Sbjct: 1  MAMCW---IRQVESSGQKCPIEFSSRFLAKSGPIGRIRGAKLKISASRNFSV 49

[Close]
BLAST of Lsi03G001670 vs. TrEMBL
Match: A0A0A0KVT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638460 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 65  FGMLNCIANNAAAAGQKATRRILIFSATSRAHPRFSS 102
           FGMLNCIANNAAAAGQKATR I IF+ATS+AHPRF +
Sbjct: 113 FGMLNCIANNAAAAGQKATRGIFIFAATSKAHPRFQA 149

[Close]
BLAST of Lsi03G001670 vs. NCBI nr
Match: gi|700197328|gb|KGN52505.1| (hypothetical protein Csa_5G638450 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 

Query: 1  MQHCWSSHFRQVESSGQKCPMEFSSRLLAKSGPIGRMQGAKLKISPSRSYTV 53
          M  CW    RQVESSGQKCP+EFSSR LAKSGPIGR++GAKLKIS SR+++V
Sbjct: 1  MAMCW---IRQVESSGQKCPIEFSSRFLAKSGPIGRIRGAKLKISASRNFSV 49

[Close]
BLAST of Lsi03G001670 vs. NCBI nr
Match: gi|700197330|gb|KGN52507.1| (hypothetical protein Csa_5G638460 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 65  FGMLNCIANNAAAAGQKATRRILIFSATSRAHPRFSS 102
           FGMLNCIANNAAAAGQKATR I IF+ATS+AHPRF +
Sbjct: 113 FGMLNCIANNAAAAGQKATRGIFIFAATSKAHPRFQA 149

The following BLAST results are available for this feature:
BLAST of Lsi03G001670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G001670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSG1_CUCSA4.2e-1173.08Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638450 PE=4 SV=1[more]
A0A0A0KVT1_CUCSA1.3e-0783.78Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638460 PE=4 SV=1[more]
BLAST of Lsi03G001670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G001670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197328|gb|KGN52505.1|6.0e-1173.08hypothetical protein Csa_5G638450 [Cucumis sativus][more]
gi|700197330|gb|KGN52507.1|1.8e-0783.78hypothetical protein Csa_5G638460 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001670.1Lsi03G001670.1mRNA