Lsi03G001580 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G001580
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMembrane-anchored ubiquitin-fold protein 2
Locationchr03 : 2186944 .. 2189536 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAGTGGGAGATCAATTGGAGATCAAGTTTCGATTGAACGATGGATCTGATATTGGCCCCAAAACCTTCCCTGCTGCCACAAGCATAGCAACCTTGAAAGAAAGCGTTCTTGCACAATGGCCAAGAGGTGTGTGAAATTTGAACTTCTTTCTCTTAGTTTTGGCTTTTGGGGGTGGTTGATTTTGCTTGAATTCCTATCCTATGCTGATCTTGTAACTCTGTTTGTAATTGAAGTATTTAAGTTTAAACATTTTCAGCATATTGGCATCTGTTTCGTCATTTACTCAAAATCAGAGAAAATCTTTAGACGAAACACAACACAAGTAAAGCTCTGATCTGATGTAGAACTCTGCATTTTCTTCGTTCTTGCTGTTGCCATTTCAGAAGAGACACTACACCCTGATCGGGGGAAAACGTTTAACAATCCGTTTCTGGTGCATAAAAATCCATGATATTTGTTTTATGTTGGATCTTCTATAAGCATTTTGAACTTATTGATTAGATTTTATGCCTCTTTGAAAGAGATTCTATTAGAGAATGTCGGATTCTTTGTCTGGTTTCATCTGATCACATTCTTAACAGAAGAGTGCTCTTTGTTTTCCATTTACTTTGGATCTTCTGGTTTCATTCCTTCAAGTTGCAATATGTCTCTGAAATCATTCATTTTCCTAAATCATATGCAGTGGAAAACTCTTGGATTTGAACTTGATTAGGAAGCCTTTCTAGGCCTTTTACACTTACCAATGCCTTCATTCGTTTGATTGCTTTTCCACCCCTTGTACCCATCATATTTCTTTGTCTATGCTCTCAGACCCTGATCAACGTGGTTTCTTGTTTGCTATAGCTTGAATCTGTGATTGACATATATATAGACTCCTTATTGTTTTTTCCTGAGGCAGTAAATCTTGTAATATCATTATACAGATGCATTTATCAATACGATTTAGTGTCATCCACATTGTCCTCCCAACACTTTCACCAGATCTTAGATTAATGAGAATTTTTATATTAGGCAATGGTAATAAGGATGATATTTCTGTTGCATTAACTCTGGCTAGATTTTAAATGTTTCTTTTTGTTACCATCCTATTGTGAATGTAGGACGAGTAATCACGATTATTATTGTTTCTTCTGAGGTACGAGTAATCACGATTATTTGTTTGAGCAGAAAAGGAGAATGGTCCAAGAACAGTTAAGGATGTCAAGTTAATAAGTGCAGGAAAAATCTTAGAGAATAACAGAACACTTAATGATTGCAGAAGCCCTCTATATGACATTCCTGGCACTGTGACAACCATGCATGTTGTTATCCAACCACCAAGTTTGGAGAAAGGTATAATCTGTTCTATAAAAGTTTATATTATCAATTACTTACGATAGAATGAATATTGCTTTTTGACATCTCACTTGGATTTGTCTGGAATTATCTTTTGCTGTATTTTGAAGTTTCCTTTGATTCCACTTCAATTGCTTGATAAAGATTTAAAATACCCGGCTAGACTCTTCCTTTGGGATAAACAATAGCTGGATGATTCTGCTATTTGGGGATAACCAATTACTGTTCCTTAGAGTTGTCTTCTTGAACATAAAACTATTCAGAACTGCTGAAGTTCAGCTGGATGGGTTTTATCTGTCAAACTTACACTTACAAAGGTTTATAATAGATGTGCCTAGATGTCTTTGCATTGAGCATTGGTATGCGTATATGTATATGCAATTATTCTTATGTTTGCTCAAAGGCTGTGGAAAATATAATGGGAAGAAGCACAGCATCAGGTCAATTGTTTTTTTTAGTTTTGAAGTAGCTTAGAATACATATGTTGAAAGATAAGCTCTCAACAAAAGGCACCTGTTGTGGCTGTTACTGCATATTGAAGCCAAGCCTATTGAAACATTGAGGTTCAAATGGGATTACTAATGGAAGTTATCTTCTTTGCCTGAGCAGAAAAGAAAGCTGGAGACCAAGCAACACAAAACAAGTGTGTTTGTGTTATACTATAAACGGAACTTGTGGAAGTTCTCGACGCCATTTTTGAGTGCATAAAGATAGCAAATTTTCCTTTTAAAAGTTCTGATGCCAATAACAGCTTGGAATCAGTTGAAGAAGCTTATTCTGGAGCTTGTGTTATTGTTTTCACAGTAGTAAAAGAAAAAGAAAAGAAAAAGAAACAGACAGAGGTAGTAAAGATGGCGAAGACGATGGGATATTTATCGACACAAGCCAGTTGTAGATCAGATCCATGGCAGTTGAATGTCTGGTGATCTATTATGAAGGGTTGTTGCCTTTTCAACATCCATTGTTAGCTTCATTTGTTGTTTAGATTGATTTTGTGTAACTCTTCCGCTATCTCAAATGTTTGTGATGAAAGCTTTATATACTTGAAGTTGCAGTTAGCCATTTACCTTTTTTTAAAATATTCTTCAAACTGTATCACCATTTGGGTTTAGGCCCCAACTTCATGATACTTTTCCCCCTCTTCCCAAACAAGGAATGATAATATTTCTTTGATTTTCTTTCTGGTATGCTTGAATGAAAACTAAATGGTGAGCCAATTTCAACATTATAATATAATTATAATTTTATCTT

mRNA sequence

ATGGCTGGAGTGGGAGATCAATTGGAGATCAAGTTTCGATTGAACGATGGATCTGATATTGGCCCCAAAACCTTCCCTGCTGCCACAAGCATAGCAACCTTGAAAGAAAGCGTTCTTGCACAATGGCCAAGAGGTGTAAGCCCTCTATATGACATTCCTGGCACTGTGACAACCATGCATGTTGTTATCCAACCACCAAGTTTGGAGAAAGAAAAGAAAGCTGGAGACCAAGCAACACAAAACAAGTGTGTTTGTGTTATACTATAAACGGAACTTGTGGAAGTTCTCGACGCCATTTTTGAGTGCATAAAGATAGCAAATTTTCCTTTTAAAAGTTCTGATGCCAATAACAGCTTGGAATCAGTTGAAGAAGCTTATTCTGGAGCTTGTGTTATTGTTTTCACAGTAGTAAAAGAAAAAGAAAAGAAAAAGAAACAGACAGAGGTAGTAAAGATGGCGAAGACGATGGGATATTTATCGACACAAGCCAGTTGTAGATCAGATCCATGGCAGTTGAATGTCTGGTGATCTATTATGAAGGGTTGTTGCCTTTTCAACATCCATTGTTAGCTTCATTTGTTGTTTAGATTGATTTTGTGTAACTCTTCCGCTATCTCAAATGTTTGTGATGAAAGCTTTATATACTTGAAGTTGCAGTTAGCCATTTACCTTTTTTTAAAATATTCTTCAAACTGTATCACCATTTGGGTTTAGGCCCCAACTTCATGATACTTTTCCCCCTCTTCCCAAACAAGGAATGATAATATTTCTTTGATTTTCTTTCTGGTATGCTTGAATGAAAACTAAATGGTGAGCCAATTTCAACATTATAATATAATTATAATTTTATCTT

Coding sequence (CDS)

ATGGCTGGAGTGGGAGATCAATTGGAGATCAAGTTTCGATTGAACGATGGATCTGATATTGGCCCCAAAACCTTCCCTGCTGCCACAAGCATAGCAACCTTGAAAGAAAGCGTTCTTGCACAATGGCCAAGAGGTGTAAGCCCTCTATATGACATTCCTGGCACTGTGACAACCATGCATGTTGTTATCCAACCACCAAGTTTGGAGAAAGAAAAGAAAGCTGGAGACCAAGCAACACAAAACAAGTGTGTTTGTGTTATACTATAA

Protein sequence

MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGVSPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL
Homology
[Close]
BLAST of Lsi03G001580 vs. Swiss-Prot
Match: MUB2_ARATH (Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-21
Identity = 60/119 (50.42%), Postives = 68/119 (57.14%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRLNDGSDIGPK FP AT++ATLKE+V+AQWPR                
Sbjct: 1   MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKK----AGDQATQNKCVCV 87
                          SP+ +  G VTTMHV+IQ    EKEKK     GD   QNKCVC+
Sbjct: 61  AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGD-LKQNKCVCL 118

[Close]
BLAST of Lsi03G001580 vs. Swiss-Prot
Match: MUB1_ARATH (Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-20
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V +QLEIKFRL DGSDIGPK FP AT+++ LKE+V+++WPR                
Sbjct: 1   MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SP+ ++ G VTTMHV+IQ P  EKEKK       NKCVC ++
Sbjct: 61  AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM 117

[Close]
BLAST of Lsi03G001580 vs. Swiss-Prot
Match: MUB3_ORYSJ (Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-14
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGVS------------- 60
           MAG  + +E+KFRL DG+DIGP  +  +T+++ LKE +LA+WP+                
Sbjct: 1   MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLIN 60

Query: 61  ----------------PLYDIPGTVTTMHVVIQPPSLEK--EKKAGDQATQNKCVCVIL 89
                           P+ ++PG V TMHVV++PP  +K  EK+  +   QN+C C IL
Sbjct: 61  AGRILENNRTLAESRVPVGEVPGGVITMHVVVRPPQPDKNSEKQLANSPKQNRCGCTIL 119

[Close]
BLAST of Lsi03G001580 vs. Swiss-Prot
Match: MUB1_ORYSJ (Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-12
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 1 

Query: 3   GVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWP----RGVSPLYDI----PG 62
           GV +Q EIKFRL DG+DIGPK +PAA+++ATLKES++AQWP    +G   + D+     G
Sbjct: 4   GVQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAG 63

Query: 63  TVT--------------------TMHVVIQPPSLEKE--KKAGDQATQNKCVCVIL 89
            +                     TMHVV++ P+ +K+  K    +    +C C I+
Sbjct: 64  KILENNKTLSECKSPICDFSGLTTMHVVVRAPTSDKQSNKIVAKKPKDFRCGCSIM 119

[Close]
BLAST of Lsi03G001580 vs. Swiss-Prot
Match: MUB5_ARATH (Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11
Identity = 43/119 (36.13%), Postives = 57/119 (47.90%), Query Frame = 1 

Query: 3   GVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRG----------------- 62
           G  D +E+KFRL DG+DIGP  +    ++A+LKE ++AQWP+                  
Sbjct: 2   GDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGG 61

Query: 63  -----------VSPLYDIP---GTVTTMHVVIQPPSLE--KEKKAGDQATQNKCVCVIL 89
                         L  I    G VTTMHVV++PP  E  KEK   D   ++ CVC IL
Sbjct: 62  KILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120

[Close]
BLAST of Lsi03G001580 vs. TrEMBL
Match: A0A0A0KUE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638380 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.3e-36
Identity = 81/117 (69.23%), Postives = 86/117 (73.50%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATS+ATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSVATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPP+LEKEKKAG+QATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEKEKKAGEQATQNKCVCVIL 117

[Close]
BLAST of Lsi03G001580 vs. TrEMBL
Match: A0A0D2SB70_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G081400 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-30
Identity = 73/100 (73.00%), Postives = 78/100 (78.00%), Query Frame = 1 

Query: 1  MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRG------------VSP 60
          MA V DQLEIKFRL DGSDIGPKTFPAATS+ATLKESVLAQWP+G             SP
Sbjct: 1  MAVVQDQLEIKFRLTDGSDIGPKTFPAATSVATLKESVLAQWPKGKILENNKTLGECQSP 60

Query: 61 LYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
          L DIPG +TTMHVV+QPPS EKEKK  +QA QNKCVCVIL
Sbjct: 61 LCDIPGGLTTMHVVVQPPS-EKEKKTTNQAKQNKCVCVIL 99

[Close]
BLAST of Lsi03G001580 vs. TrEMBL
Match: A0A061EF32_THECC (Membrane-anchored ubiquitin-fold protein 1 isoform 1 OS=Theobroma cacao GN=TCM_018705 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.0e-30
Identity = 74/117 (63.25%), Postives = 78/117 (66.67%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGV DQLEIKFRL DGSDIGPKTFPAATS+ATLKESVLAQWP+                
Sbjct: 1   MAGVQDQLEIKFRLTDGSDIGPKTFPAATSVATLKESVLAQWPKEKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPL DIPG VTTMHVV+QPP LEKEKKA +Q  QNKCVCVIL
Sbjct: 61  AGKILENNKTLGECQSPLCDIPGGVTTMHVVVQPPPLEKEKKATNQPKQNKCVCVIL 117

[Close]
BLAST of Lsi03G001580 vs. TrEMBL
Match: A0A067FZ82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033465mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 71/117 (60.68%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRL DGSDIGPK+FPAATS+ATLKESVL+QWP+                
Sbjct: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPL DIPG VTTMHVV+QPPS EKEKKA  Q  QNKCVCVIL
Sbjct: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKEKKAASQPKQNKCVCVIL 117

[Close]
BLAST of Lsi03G001580 vs. TrEMBL
Match: V4SZE5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013136mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-28
Identity = 71/117 (60.68%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRL DGSDIGPK+FPAATS+ATLKESVL+QWP+                
Sbjct: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPL DIPG VTTMHVV+QPPS EKEKKA  Q  QNKCVCVIL
Sbjct: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKEKKAASQPKQNKCVCVIL 117

[Close]
BLAST of Lsi03G001580 vs. TAIR10
Match: AT5G15460.1 (AT5G15460.1 membrane-anchored ubiquitin-fold protein 2)

HSP 1 Score: 100.9 bits (250), Expect = 4.1e-22
Identity = 60/119 (50.42%), Postives = 68/119 (57.14%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRLNDGSDIGPK FP AT++ATLKE+V+AQWPR                
Sbjct: 1   MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKK----AGDQATQNKCVCV 87
                          SP+ +  G VTTMHV+IQ    EKEKK     GD   QNKCVC+
Sbjct: 61  AGRILENNKTVGDCRSPVGNFSGAVTTMHVIIQHQVTEKEKKKKKPKGD-LKQNKCVCL 118

[Close]
BLAST of Lsi03G001580 vs. TAIR10
Match: AT3G01050.1 (AT3G01050.1 membrane-anchored ubiquitin-fold protein 1 precursor)

HSP 1 Score: 99.8 bits (247), Expect = 9.2e-22
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V +QLEIKFRL DGSDIGPK FP AT+++ LKE+V+++WPR                
Sbjct: 1   MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SP+ ++ G VTTMHV+IQ P  EKEKK       NKCVC ++
Sbjct: 61  AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM 117

[Close]
BLAST of Lsi03G001580 vs. TAIR10
Match: AT1G77870.1 (AT1G77870.1 membrane-anchored ubiquitin-fold protein 5 precursor)

HSP 1 Score: 70.1 bits (170), Expect = 7.8e-13
Identity = 43/119 (36.13%), Postives = 57/119 (47.90%), Query Frame = 1 

Query: 3   GVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRG----------------- 62
           G  D +E+KFRL DG+DIGP  +    ++A+LKE ++AQWP+                  
Sbjct: 2   GDEDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGG 61

Query: 63  -----------VSPLYDIP---GTVTTMHVVIQPPSLE--KEKKAGDQATQNKCVCVIL 89
                         L  I    G VTTMHVV++PP  E  KEK   D   ++ CVC IL
Sbjct: 62  KILENNKTLSEARSLITIGELPGIVTTMHVVLRPPLFEKKKEKLQNDPPRKSHCVCCIL 120

[Close]
BLAST of Lsi03G001580 vs. TAIR10
Match: AT1G22050.1 (AT1G22050.1 membrane-anchored ubiquitin-fold protein 6 precursor)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-12
Identity = 40/122 (32.79%), Postives = 61/122 (50.00%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGVSPLYDIPGTVT--- 60
           MAG  D +E+KFRL DG+DIGP  +  + ++++LKE +++QWP+      + P TV    
Sbjct: 1   MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKE---NTPKTVNDMK 60

Query: 61  -----------------------------TMHVVIQPPSLEK--EKKAGDQATQNKCVCV 89
                                        TMH+V++ P+L+K  EK   D   +N+CVC 
Sbjct: 61  LINAGKILENNRTLAESRLPVCELPGMIITMHIVLRLPTLDKKSEKLQNDPPMKNRCVCT 119

[Close]
BLAST of Lsi03G001580 vs. TAIR10
Match: AT4G24990.1 (AT4G24990.1 Ubiquitin family protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.6e-11
Identity = 41/115 (35.65%), Postives = 54/115 (46.96%), Query Frame = 1 

Query: 6   DQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRG-------------------- 65
           + ++IKFRL DGSDIGP  + AA+++  LK+ V++ WP+G                    
Sbjct: 5   ESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKIL 64

Query: 66  ---------VSPLYDIPGTVTTMHVVIQPPSLEK---EKKAGDQATQNKCVCVIL 89
                     +P  DI G V  MHVV+Q PSL K   EKK         C C IL
Sbjct: 65  ENNKTVGQCKTPFGDIAGGVIVMHVVVQ-PSLAKSKTEKKVDKAPKAVICTCTIL 118

[Close]
BLAST of Lsi03G001580 vs. NCBI nr
Match: gi|659118903|ref|XP_008459370.1| (PREDICTED: membrane-anchored ubiquitin-fold protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 8.0e-36
Identity = 82/117 (70.09%), Postives = 86/117 (73.50%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPP+LEKEKKAG+QATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEKEKKAGEQATQNKCVCVIL 117

[Close]
BLAST of Lsi03G001580 vs. NCBI nr
Match: gi|449447408|ref|XP_004141460.1| (PREDICTED: membrane-anchored ubiquitin-fold protein 2-like [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-35
Identity = 81/117 (69.23%), Postives = 86/117 (73.50%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGVGDQLEIKFRLNDGSDIGPKTFPAATS+ATLKES+LAQWPR                
Sbjct: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSVATLKESILAQWPREKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPLYDIPG+VTTMHVVIQPP+LEKEKKAG+QATQNKCVCVIL
Sbjct: 61  AGKILENNRTLNDCRSPLYDIPGSVTTMHVVIQPPTLEKEKKAGEQATQNKCVCVIL 117

[Close]
BLAST of Lsi03G001580 vs. NCBI nr
Match: gi|763771928|gb|KJB39051.1| (hypothetical protein B456_007G081400 [Gossypium raimondii])

HSP 1 Score: 139.0 bits (349), Expect = 3.9e-30
Identity = 73/100 (73.00%), Postives = 78/100 (78.00%), Query Frame = 1 

Query: 1  MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRG------------VSP 60
          MA V DQLEIKFRL DGSDIGPKTFPAATS+ATLKESVLAQWP+G             SP
Sbjct: 1  MAVVQDQLEIKFRLTDGSDIGPKTFPAATSVATLKESVLAQWPKGKILENNKTLGECQSP 60

Query: 61 LYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
          L DIPG +TTMHVV+QPPS EKEKK  +QA QNKCVCVIL
Sbjct: 61 LCDIPGGLTTMHVVVQPPS-EKEKKTTNQAKQNKCVCVIL 99

[Close]
BLAST of Lsi03G001580 vs. NCBI nr
Match: gi|590650597|ref|XP_007032679.1| (Membrane-anchored ubiquitin-fold protein 1 precursor isoform 1 [Theobroma cacao])

HSP 1 Score: 137.9 bits (346), Expect = 8.6e-30
Identity = 74/117 (63.25%), Postives = 78/117 (66.67%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MAGV DQLEIKFRL DGSDIGPKTFPAATS+ATLKESVLAQWP+                
Sbjct: 1   MAGVQDQLEIKFRLTDGSDIGPKTFPAATSVATLKESVLAQWPKEKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPL DIPG VTTMHVV+QPP LEKEKKA +Q  QNKCVCVIL
Sbjct: 61  AGKILENNKTLGECQSPLCDIPGGVTTMHVVVQPPPLEKEKKATNQPKQNKCVCVIL 117

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BLAST of Lsi03G001580 vs. NCBI nr
Match: gi|567877277|ref|XP_006431228.1| (hypothetical protein CICLE_v10013136mg [Citrus clementina])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 71/117 (60.68%), Postives = 76/117 (64.96%), Query Frame = 1 

Query: 1   MAGVGDQLEIKFRLNDGSDIGPKTFPAATSIATLKESVLAQWPRGV-------------- 60
           MA V DQLEIKFRL DGSDIGPK+FPAATS+ATLKESVL+QWP+                
Sbjct: 1   MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS 60

Query: 61  ---------------SPLYDIPGTVTTMHVVIQPPSLEKEKKAGDQATQNKCVCVIL 89
                          SPL DIPG VTTMHVV+QPPS EKEKKA  Q  QNKCVCVIL
Sbjct: 61  AGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPSTEKEKKAASQPKQNKCVCVIL 117

The following BLAST results are available for this feature:
BLAST of Lsi03G001580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MUB2_ARATH7.3e-2150.42Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 ... [more]
MUB1_ARATH1.6e-2044.44Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 ... [more]
MUB3_ORYSJ1.0e-1435.29Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MU... [more]
MUB1_ORYSJ2.8e-1237.07Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MU... [more]
MUB5_ARATH1.4e-1136.13Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 ... [more]
BLAST of Lsi03G001580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUE8_CUCSA7.3e-3669.23Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638380 PE=4 SV=1[more]
A0A0D2SB70_GOSRA2.7e-3073.00Uncharacterized protein OS=Gossypium raimondii GN=B456_007G081400 PE=4 SV=1[more]
A0A061EF32_THECC6.0e-3063.25Membrane-anchored ubiquitin-fold protein 1 isoform 1 OS=Theobroma cacao GN=TCM_0... [more]
A0A067FZ82_CITSI1.5e-2860.68Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033465mg PE=4 SV=1[more]
V4SZE5_9ROSI1.5e-2860.68Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013136mg PE=4 SV=1[more]
BLAST of Lsi03G001580 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G15460.14.1e-2250.42 membrane-anchored ubiquitin-fold protein 2[more]
AT3G01050.19.2e-2244.44 membrane-anchored ubiquitin-fold protein 1 precursor[more]
AT1G77870.17.8e-1336.13 membrane-anchored ubiquitin-fold protein 5 precursor[more]
AT1G22050.11.0e-1232.79 membrane-anchored ubiquitin-fold protein 6 precursor[more]
AT4G24990.15.6e-1135.65 Ubiquitin family protein[more]
BLAST of Lsi03G001580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118903|ref|XP_008459370.1|8.0e-3670.09PREDICTED: membrane-anchored ubiquitin-fold protein 2-like isoform X2 [Cucumis m... [more]
gi|449447408|ref|XP_004141460.1|1.0e-3569.23PREDICTED: membrane-anchored ubiquitin-fold protein 2-like [Cucumis sativus][more]
gi|763771928|gb|KJB39051.1|3.9e-3073.00hypothetical protein B456_007G081400 [Gossypium raimondii][more]
gi|590650597|ref|XP_007032679.1|8.6e-3063.25Membrane-anchored ubiquitin-fold protein 1 precursor isoform 1 [Theobroma cacao][more]
gi|567877277|ref|XP_006431228.1|2.1e-2860.68hypothetical protein CICLE_v10013136mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G001580.1Lsi03G001580.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 4..45
score: 3.
NoneNo IPR availablePANTHERPTHR13169UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEINcoord: 1..88
score: 6.2
NoneNo IPR availablePANTHERPTHR13169:SF4MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1-RELATEDcoord: 1..88
score: 6.2
NoneNo IPR availablePFAMPF13881Rad60-SLD_2coord: 6..46
score: 5.8E-13coord: 48..86
score: 8.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G001580Csa5G638380Cucumber (Chinese Long) v2culsiB353
Lsi03G001580CSPI05G29280Wild cucumber (PI 183967)cpilsiB357
Lsi03G001580Cucsa.157960Cucumber (Gy14) v1cgylsiB254
Lsi03G001580CmaCh04G027940Cucurbita maxima (Rimu)cmalsiB656
Lsi03G001580CmaCh15G002460Cucurbita maxima (Rimu)cmalsiB276
Lsi03G001580CmoCh04G029270Cucurbita moschata (Rifu)cmolsiB645
Lsi03G001580CmoCh15G002550Cucurbita moschata (Rifu)cmolsiB265
Lsi03G001580Cla016532Watermelon (97103) v1lsiwmB278
Lsi03G001580MELO3C022023Melon (DHL92) v3.5.1lsimeB233
Lsi03G001580MELO3C022023.2Melon (DHL92) v3.6.1lsimedB243
Lsi03G001580Cla97C11G211420Watermelon (97103) v2lsiwmbB222
Lsi03G001580Bhi06G000289Wax gourdlsiwgoB312
Lsi03G001580Cp4.1LG01g22470Cucurbita pepo (Zucchini)cpelsiB339
Lsi03G001580Cp4.1LG13g08120Cucurbita pepo (Zucchini)cpelsiB143
Lsi03G001580CsGy5G028690Cucumber (Gy14) v2cgyblsiB325
Lsi03G001580Carg05876Silver-seed gourdcarlsiB017
Lsi03G001580Carg02228Silver-seed gourdcarlsiB236
Lsi03G001580CsaV3_5G038420Cucumber (Chinese Long) v3cuclsiB378
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G001580Cucumber (Chinese Long) v3cuclsiB384
Lsi03G001580Wild cucumber (PI 183967)cpilsiB362
Lsi03G001580Cucumber (Chinese Long) v2culsiB359
Lsi03G001580Melon (DHL92) v3.5.1lsimeB238
Lsi03G001580Watermelon (Charleston Gray)lsiwcgB245
Lsi03G001580Watermelon (Charleston Gray)lsiwcgB226
Lsi03G001580Melon (DHL92) v3.6.1lsimedB249