Lsi03G001540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G001540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	UPF0301 protein
Location	chr03 : 2151808 .. 2153091 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTACTCTTCCTTTCATCCTTATAAAGCTTCTTCCACTTCCCTTCATCTTGCAAGAAAAAAGAGAAGGAAAGAAGAGATCCCAACAAAAATTATGGAAGCTTGTTTTGTGACCTCCAAACTCGCTGCTTTCCCAATTCATATAAGAAAATCCCCATCCCCATCATCTCTCAAAATATCATGTAAGTCCTTTTACTCTCTTCTTTTTGCTTAAATATCCCTTCTTCGATGTTAGCAAAATACGAACTTTCTTGATACGGTACCTTTTTTGGATTCACTATTCTTGGATCAGATCTCACTTTAGTAACCTGAGATTATCTAACACTCATTCTTAGGTTGTCAATTTAGGTCACCATCGTCAGGAGCAGAGGATGATGATTGGAGATCATTTAGAGCAAAATTGATTGCCACTCAGAAACTATCAACGCCTCAGATTTCATCTTCCTTTGTGGATCTTGACACGGTGGTGGATCATCCACCGTCCATCTCCATAGGTGAGAAATGGGCCCATGTCATTCATGGGCCTGAAAAGGGATGTCTTTTAATAGCCACAGAGAAGCTTGATGGAGTGCACATATTCGAACGAACAGTGATCCTTTTGTTATCAAATGGGCCGTTAGGCCCATCAGGGATCATATTAAACAGACCCTCATTGATGTCCATTAAGGAAACGGGGTCGACTGCGTTGGACGTCGCGGGGACGTTCTCGGAGCAGGCGTTGTACTTTGGTGGGCCTTTGGAAGAGGGCTTGTTTCTAGTGAGCCCAAAGAGAAATGGGGAAGATGGGGTTGGAAAGAGTGGGGTATTTGAGGAAGTAATGAAAGGGATGTATTATGGGAGTAAAGAGAGTGTTGGATGTGCAGCAGAAATGGTGAAGAGGAATATAGTTGGGGCTGAAGACTTCAGGTTCTTTGATGGGTATTGTGGGTGGGATAAGGACCAATTGAAAGATGAAATTAAAGCTGGTTATTGGACTGTGGTAGCTTGTAGTCCAAGTTTAATTCAAATGGATGTGGGAAATATGGGCCTTTGGGAAAACCTACTTGGGCTTCTCGGCCCTAAAAAGGTTTGGTGAACTCATCATACCAAACCAACCAACAAACCTCAAGGAAAGGGTCCTTTTACAAACATGGGGTTGCAAGTTTGAGTAAATGCAGTTTCAATTTTTTTTTTTTTTTTTTTTTGATAATTTCTAACATTTTCCACAGAGAGGGACCGATATGTAAATTTGAAACAATTATTTGTCAGATGAAGAAGGTGCAATTTATGAAATCTTAACTTCCAC

mRNA sequence

ATTTACTCTTCCTTTCATCCTTATAAAGCTTCTTCCACTTCCCTTCATCTTGCAAGAAAAAAGAGAAGGAAAGAAGAGATCCCAACAAAAATTATGGAAGCTTGTTTTGTGACCTCCAAACTCGCTGCTTTCCCAATTCATATAAGAAAATCCCCATCCCCATCATCTCTCAAAATATCATGTTGTCAATTTAGGTCACCATCGTCAGGAGCAGAGGATGATGATTGGAGATCATTTAGAGCAAAATTGATTGCCACTCAGAAACTATCAACGCCTCAGATTTCATCTTCCTTTGTGGATCTTGACACGGTGGTGGATCATCCACCGTCCATCTCCATAGGTGAGAAATGGGCCCATGTCATTCATGGGCCTGAAAAGGGATGTCTTTTAATAGCCACAGAGAAGCTTGATGGAGTGCACATATTCGAACGAACAGTGATCCTTTTGTTATCAAATGGGCCGTTAGGCCCATCAGGGATCATATTAAACAGACCCTCATTGATGTCCATTAAGGAAACGGGGTCGACTGCGTTGGACGTCGCGGGGACGTTCTCGGAGCAGGCGTTGTACTTTGGTGGGCCTTTGGAAGAGGGCTTGTTTCTAGTGAGCCCAAAGAGAAATGGGGAAGATGGGGTTGGAAAGAGTGGGGTATTTGAGGAAGTAATGAAAGGGATGTATTATGGGAGTAAAGAGAGTGTTGGATGTGCAGCAGAAATGGTGAAGAGGAATATAGTTGGGGCTGAAGACTTCAGGTTCTTTGATGGGTATTGTGGGTGGGATAAGGACCAATTGAAAGATGAAATTAAAGCTGGTTATTGGACTGTGGTAGCTTGTAGTCCAAGTTTAATTCAAATGGATGTGGGAAATATGGGCCTTTGGGAAAACCTACTTGGGCTTCTCGGCCCTAAAAAGGTTTGGTGAACTCATCATACCAAACCAACCAACAAACCTCAAGGAAAGGGTCCTTTTACAAACATGGGGTTGCAAGTTTGAGTAAATGCAGTTTCAATTTTTTTTTTTTTTTTTTTTTGATAATTTCTAACATTTTCCACAGAGAGGGACCGATATGTAAATTTGAAACAATTATTTGTCAGATGAAGAAGGTGCAATTTATGAAATCTTAACTTCCAC

Coding sequence (CDS)

ATGGAAGCTTGTTTTGTGACCTCCAAACTCGCTGCTTTCCCAATTCATATAAGAAAATCCCCATCCCCATCATCTCTCAAAATATCATGTTGTCAATTTAGGTCACCATCGTCAGGAGCAGAGGATGATGATTGGAGATCATTTAGAGCAAAATTGATTGCCACTCAGAAACTATCAACGCCTCAGATTTCATCTTCCTTTGTGGATCTTGACACGGTGGTGGATCATCCACCGTCCATCTCCATAGGTGAGAAATGGGCCCATGTCATTCATGGGCCTGAAAAGGGATGTCTTTTAATAGCCACAGAGAAGCTTGATGGAGTGCACATATTCGAACGAACAGTGATCCTTTTGTTATCAAATGGGCCGTTAGGCCCATCAGGGATCATATTAAACAGACCCTCATTGATGTCCATTAAGGAAACGGGGTCGACTGCGTTGGACGTCGCGGGGACGTTCTCGGAGCAGGCGTTGTACTTTGGTGGGCCTTTGGAAGAGGGCTTGTTTCTAGTGAGCCCAAAGAGAAATGGGGAAGATGGGGTTGGAAAGAGTGGGGTATTTGAGGAAGTAATGAAAGGGATGTATTATGGGAGTAAAGAGAGTGTTGGATGTGCAGCAGAAATGGTGAAGAGGAATATAGTTGGGGCTGAAGACTTCAGGTTCTTTGATGGGTATTGTGGGTGGGATAAGGACCAATTGAAAGATGAAATTAAAGCTGGTTATTGGACTGTGGTAGCTTGTAGTCCAAGTTTAATTCAAATGGATGTGGGAAATATGGGCCTTTGGGAAAACCTACTTGGGCTTCTCGGCCCTAAAAAGGTTTGGTGA

Protein sequence

MEACFVTSKLAAFPIHIRKSPSPSSLKISCCQFRSPSSGAEDDDWRSFRAKLIATQKLSTPQISSSFVDLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLSNGPLGPSGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQMDVGNMGLWENLLGLLGPKKVW

Homology

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BLAST of Lsi03G001540 vs. Swiss-Prot
Match: Y2674_SHEDO (UPF0301 protein Sden_2674 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=Sden_2674 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-09
Identity = 54/180 (30.00%), Postives = 78/180 (43.33%), Query Frame = 1


Query: 95  KGCLLIATEKLDGVHIFERTVILLLSNGPLGPSGIILNRPSLMSIKETG-STALDVAGTF 154
           K  LLIA   LDG   FERTVI +  +   G  GI++NRP  +S++       LD     
Sbjct: 5   KNHLLIAMPSLDG-SFFERTVIYVCEHDEKGAMGIVINRPIGLSVEALLIQMDLDAEANL 64

Query: 155 SEQA-LYFGGPL--EEGLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVK 214
           S+ A +  GGP+  + G  L SP++                    + + E+V     +  
Sbjct: 65  SDDAQVLIGGPVLPDRGFVLHSPEK-------------------VWTNSEAVSDYCTLTT 124

Query: 215 R----NIVGAED----FRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQMDVGNMGLW 263
                N +G+ D    F+   GY GW KDQL+ E+    W  +  S  L+  DV    LW
Sbjct: 125 SRDILNAIGSADAPSQFKVALGYSGWSKDQLEQELADNTWLTIKASSELV-FDVDYEQLW 163

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BLAST of Lsi03G001540 vs. Swiss-Prot
Match: Y1773_CYTH3 (UPF0301 protein CHU_1773 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=CHU_1773 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-09
Identity = 51/178 (28.65%), Postives = 91/178 (51.12%), Query Frame = 1


Query: 95  KGCLLIATEKLDGVHIFERTVILLLSNGPLGPSGIILNRPSLMSIKETGSTALDVAGTFS 154
           KG +LI+   L G   FER+V+LL  +   G  G +LN+ + ++I    ++ L+   TF 
Sbjct: 4   KGKILISEPYL-GDSTFERSVVLLCEHNDSGAFGFMLNKSTTLTI----NSVLEEQLTF- 63

Query: 155 EQALYFGGPL-EEGLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNI 214
           EQ L+ GGP+ ++ LF +  +   +  + K  V   +   +Y+G          +++   
Sbjct: 64  EQNLFLGGPVAQDSLFFLLRQ---DRAILKDSV--HIKDDLYWGG--DFEHLKTLIQEGT 123

Query: 215 VGAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQMDVGN-MGLWENLLGLLG 271
           +  ++ RFF GY GW +DQL+ E++   W +   +     M V N   +W+N+L  +G
Sbjct: 124 LELDNCRFFLGYSGWGEDQLEYELEKHSWIIADINSE--DMFVKNPESMWQNVLRSMG 166

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BLAST of Lsi03G001540 vs. Swiss-Prot
Match: Y2948_STRCO (UPF0301 protein SCO2948 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=SCO2948 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-08
Identity = 54/172 (31.40%), Postives = 76/172 (44.19%), Query Frame = 1


Query: 96  GCLLIATEKLDGVHIFERTVILLLSNGPLGPSGIILNRPSLMSIKETGSTALDVAGTFSE 155
           G LL+AT  L   + FER V+LLL +   G  G++LNRP+ + + +      D+AG    
Sbjct: 12  GRLLVATPALADPN-FERAVVLLLDHDEEGSLGVVLNRPTPVDVGDILEDWADLAG--EP 71

Query: 156 QALYFGGPLEEGLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVGCAAEM-VKRNIV 215
             ++ GGP+     L      G    G SG    +     +G+   V   A   +    V
Sbjct: 72  GVVFQGGPVSLDSALGVAVVPG----GASGERAPLGWRRVHGAIGLVDLEAPPELLAPAV 131

Query: 216 GAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQMDVGNMGLWENLL 267
           GA   R F GY GW   QL+DE+  G W VV   P  +        LW  +L
Sbjct: 132 GA--LRIFAGYAGWGPGQLEDELTEGAWYVVESEPGDVSSPFPER-LWREVL 173

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BLAST of Lsi03G001540 vs. Swiss-Prot
Match: Y2109_BACFN (UPF0301 protein BF2109 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) GN=BF2109 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 51/189 (26.98%), Postives = 83/189 (43.92%), Query Frame = 1


Query: 93  PEKGCLLIATEKLDGVHIFERTVILLLSNGPLGPSGIILNRPS-------LMSIKETGST 152
           P +G +LI+   L  V  F R+V+LL+ +   G  G+I+N+P        +   K     
Sbjct: 17  PSRGKILISEPFLHDV-TFGRSVVLLVDHTEEGSMGLIINKPLPLMLNDIIKEFKYIEDI 76

Query: 153 ALDVAGTFSEQALYFGGPLEE--GLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVG 212
            L   G      L++   L E  G   ++      +G+  +G F+ + K +  G+     
Sbjct: 77  PLHKGGPIGTDTLFYLHTLHEIPGTLPIN------NGLYLNGDFDAIKKYILQGNP---- 136

Query: 213 CAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQMDVGNMGLWE 272
                +K  I      RFF GY GW+ +QL  EIK   W +++   +   M+    G+W+
Sbjct: 137 -----IKGKI------RFFLGYSGWECEQLIQEIKENTW-IISKEENTYLMNEDIKGMWK 182

[Close]

BLAST of Lsi03G001540 vs. Swiss-Prot
Match: Y2056_BACFR (UPF0301 protein BF2056 OS=Bacteroides fragilis (strain YCH46) GN=BF2056 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 51/189 (26.98%), Postives = 83/189 (43.92%), Query Frame = 1


Query: 93  PEKGCLLIATEKLDGVHIFERTVILLLSNGPLGPSGIILNRPS-------LMSIKETGST 152
           P +G +LI+   L  V  F R+V+LL+ +   G  G+I+N+P        +   K     
Sbjct: 17  PSRGKILISEPFLHDV-TFGRSVVLLVDHTEEGSMGLIINKPLPLMLNDIIKEFKYIEDI 76

Query: 153 ALDVAGTFSEQALYFGGPLEE--GLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVG 212
            L   G      L++   L E  G   ++      +G+  +G F+ + K +  G+     
Sbjct: 77  PLHKGGPIGTDTLFYLHTLHEIPGTLPIN------NGLYLNGDFDAIKKYILQGNP---- 136

Query: 213 CAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQMDVGNMGLWE 272
                +K  I      RFF GY GW+ +QL  EIK   W +++   +   M+    G+W+
Sbjct: 137 -----IKGKI------RFFLGYSGWECEQLIQEIKENTW-IISKEENTYLMNEDIKGMWK 182

[Close]

BLAST of Lsi03G001540 vs. TrEMBL
Match: A0A0A0KSE6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638340 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 4.2e-146
Identity = 250/275 (90.91%), Postives = 264/275 (96.00%), Query Frame = 1


Query: 1   MEACFVTSKLAAFPIHIRKSPSPSSLKISCCQFRSPSSGAEDDDWRSFRAKLIATQKLST 60
           MEACFVTSK  +FPIH R+SP+PSSLKISCCQFRSP SG E+DDWRSFRAKLIATQKLST
Sbjct: 1   MEACFVTSKPTSFPIHTRRSPTPSSLKISCCQFRSPLSGGEEDDWRSFRAKLIATQKLST 60

Query: 61  PQISSSFVDLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLS 120
           PQISSSFVDLDTVVDHPPS+S+GEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLL+
Sbjct: 61  PQISSSFVDLDTVVDHPPSVSLGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLN 120

Query: 121 NGPLGPSGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKRNGEDG 180
           NG LGPSGIILNRPSLMSIKET STALDVAGTFSEQALYFGGPLE G+FLVSPK NGEDG
Sbjct: 121 NGQLGPSGIILNRPSLMSIKETRSTALDVAGTFSEQALYFGGPLEGGVFLVSPKTNGEDG 180

Query: 181 VGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAG 240
           VGKSGVFEEVMKGMYYG+KESVGCAAEMVKRN+VGAEDFRFFDGYCGW+KDQLKDEIKAG
Sbjct: 181 VGKSGVFEEVMKGMYYGTKESVGCAAEMVKRNLVGAEDFRFFDGYCGWEKDQLKDEIKAG 240

Query: 241 YWTVVACSPSLIQMDVGNMGLWENLLGLLGPKKVW 276
           YWTV ACSP+LIQMDVGN+GLW+NLL LLGPKKVW
Sbjct: 241 YWTVAACSPNLIQMDVGNVGLWDNLLSLLGPKKVW 275

[Close]

BLAST of Lsi03G001540 vs. TrEMBL
Match: W9QI97_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020961 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 1.7e-107
Identity = 199/269 (73.98%), Postives = 229/269 (85.13%), Query Frame = 1


Query: 16  HIRKSPSPSSLKISCC--QFRSPSSGAE----DDDWRSFRAKLIATQKL--STPQISSSF 75
           H RK  +PSS  I+CC  +  SPS   +    D DWRSFRAKL+A +++  S  + SSS 
Sbjct: 37  HHRKVATPSS--ITCCLPESYSPSDDDKKPLIDSDWRSFRAKLVAGEQVFRSQEEPSSST 96

Query: 76  VDLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLSNGPLGPS 135
           VDLDTVVDHPPSISIG+KWAH IH PEKGCLLIATEKLDGVHIFERTVILLLS GPLGPS
Sbjct: 97  VDLDTVVDHPPSISIGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSTGPLGPS 156

Query: 136 GIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKRNGEDGVGKSGVF 195
           GIILNRPSLMSIKETGSTALD+AGTFS++ L+FGGPLEEGLFLVSPK + +DGV KS VF
Sbjct: 157 GIILNRPSLMSIKETGSTALDIAGTFSDRPLFFGGPLEEGLFLVSPKGD-DDGVRKSEVF 216

Query: 196 EEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVAC 255
           EE+MKG+YYG+KESVGCAAEMVKRN++G  D RFFDGYCGW++DQLKDEI+AGYWTV AC
Sbjct: 217 EEIMKGLYYGTKESVGCAAEMVKRNMIGLGDIRFFDGYCGWERDQLKDEIRAGYWTVAAC 276

Query: 256 SPSLIQM-DVGNMGLWENLLGLLGPKKVW 276
           SPS+I +  VGN+GLWE +LGL+GP+KVW
Sbjct: 277 SPSVIGLGSVGNVGLWEEVLGLMGPRKVW 302

[Close]

BLAST of Lsi03G001540 vs. TrEMBL
Match: A0A0R0F4Z3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G263600 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-103
Identity = 192/271 (70.85%), Postives = 223/271 (82.29%), Query Frame = 1


Query: 16  HIRKSPSPSSLKISCCQFRSPSSGAEDD------DWRSFRAKLIATQKLSTP--QISSSF 75
           H RK+  P  L ISCC   SPS   +D+      DWRSFRAKL+A ++L+ P  ++S S 
Sbjct: 38  HYRKARIP--LPISCCHMSSPSPFDDDEKSTLSGDWRSFRAKLVAGEQLTRPVEEVSFSS 97

Query: 76  V-DLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLSNGPLGP 135
           V DLD VVDHPP I+IG+KWAHVIH PEKGC+LIATEKLDGVHIFERTVILLLS GPLGP
Sbjct: 98  VNDLDIVVDHPPLITIGDKWAHVIHEPEKGCILIATEKLDGVHIFERTVILLLSTGPLGP 157

Query: 136 SGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKR--NGEDGVGKS 195
           SGIILNRPSLMSIKET STALDV GTFS   L+FGGPLEEGLFL+SPK    G DGVGKS
Sbjct: 158 SGIILNRPSLMSIKETRSTALDVEGTFSNSPLFFGGPLEEGLFLLSPKEGGGGGDGVGKS 217

Query: 196 GVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTV 255
           GVFEEVMKG+YYG+KESVGCAAEMVKRN++G  DFRFFDGYCGW+K+QL+DEI+AGYWTV
Sbjct: 218 GVFEEVMKGLYYGAKESVGCAAEMVKRNVIGLGDFRFFDGYCGWEKEQLRDEIRAGYWTV 277

Query: 256 VACSPSLIQM-DVGNMGLWENLLGLLGPKKV 275
            ACSPS++ +  VG++GLW+ +LGL+  +KV
Sbjct: 278 AACSPSVVGLGSVGSVGLWDEVLGLMSRRKV 306

[Close]

BLAST of Lsi03G001540 vs. TrEMBL
Match: A0A0B2PWS7_GLYSO (Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_019272 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.0e-103
Identity = 192/271 (70.85%), Postives = 223/271 (82.29%), Query Frame = 1


Query: 16  HIRKSPSPSSLKISCCQFRSPSSGAEDD------DWRSFRAKLIATQKLSTP--QISSSF 75
           H RK+  P  L ISCC   SPS   +D+      DWRSFRAKL+A ++L+ P  ++S S 
Sbjct: 167 HYRKARIP--LPISCCHMSSPSPFDDDEKSTLSGDWRSFRAKLVAGEQLTRPVEEVSFSS 226

Query: 76  V-DLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLSNGPLGP 135
           V DLD VVDHPP I+IG+KWAHVIH PEKGC+LIATEKLDGVHIFERTVILLLS GPLGP
Sbjct: 227 VNDLDIVVDHPPLITIGDKWAHVIHEPEKGCILIATEKLDGVHIFERTVILLLSTGPLGP 286

Query: 136 SGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKR--NGEDGVGKS 195
           SGIILNRPSLMSIKET STALDV GTFS   L+FGGPLEEGLFL+SPK    G DGVGKS
Sbjct: 287 SGIILNRPSLMSIKETRSTALDVEGTFSNSPLFFGGPLEEGLFLLSPKEGGGGGDGVGKS 346

Query: 196 GVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTV 255
           GVFEEVMKG+YYG+KESVGCAAEMVKRN++G  DFRFFDGYCGW+K+QL+DEI+AGYWTV
Sbjct: 347 GVFEEVMKGLYYGAKESVGCAAEMVKRNVIGLGDFRFFDGYCGWEKEQLRDEIRAGYWTV 406

Query: 256 VACSPSLIQM-DVGNMGLWENLLGLLGPKKV 275
            ACSPS++ +  VG++GLW+ +LGL+  +KV
Sbjct: 407 AACSPSVVGLGSVGSIGLWDEVLGLMSRRKV 435

[Close]

BLAST of Lsi03G001540 vs. TrEMBL
Match: A0A0B2NUC1_GLYSO (UPF0301 protein OS=Glycine soja GN=glysoja_022222 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 9.7e-103
Identity = 196/302 (64.90%), Postives = 228/302 (75.50%), Query Frame = 1


Query: 1   MEACFV--------------TSKLAAFPIHIRKSP------SPSSLKISCCQFRSPSSGA 60
           MEACF+              T +  + P H R S       +   L ISCC   SPS   
Sbjct: 1   MEACFLSHNSFTKTTDQLIPTIRNGSLPHHKRSSQHLQCRKTRIPLPISCCHMSSPSPFG 60

Query: 61  EDD------DWRSFRAKLIATQKLSTPQISSSFVDLDTVVDHPPSISIGEKWAHVIHGPE 120
           +DD      DWRSFRAKL+A ++L+  +      DLDTVVDHPP I+IG+KWAHVIH PE
Sbjct: 61  DDDKPTLSSDWRSFRAKLVAGEQLT--RHVEEVNDLDTVVDHPPLITIGDKWAHVIHEPE 120

Query: 121 KGCLLIATEKLDGVHIFERTVILLLSNGPLGPSGIILNRPSLMSIKETGSTALDVAGTFS 180
            GCLLIATEKLDGVHIFERTVILLLS GPLGPSGIILNRPSLMSIKET STALDV GTFS
Sbjct: 121 NGCLLIATEKLDGVHIFERTVILLLSTGPLGPSGIILNRPSLMSIKETRSTALDVEGTFS 180

Query: 181 EQALYFGGPLEEGLFLVSPKR-NGEDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNI 240
              L+FGGPLEEG+FL+SPK  NG DGVGKSGVFEEVMKG+YYG+KESVGCAAEMVKRN+
Sbjct: 181 NSPLFFGGPLEEGIFLLSPKEGNGGDGVGKSGVFEEVMKGLYYGAKESVGCAAEMVKRNV 240

Query: 241 VGAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQM-DVGNMGLWENLLGLLGPK 275
           +G  DFRFFDGYCGW+K+QL+DEI+AGYWTV ACSPS++ +  VG++GLW+ +LGL+  +
Sbjct: 241 IGLGDFRFFDGYCGWEKEQLRDEIRAGYWTVAACSPSVVGLGSVGSIGLWDEVLGLMSRR 300

[Close]

BLAST of Lsi03G001540 vs. TAIR10
Match: AT3G29240.1 (AT3G29240.1 Protein of unknown function (DUF179))

HSP 1 Score: 322.8 bits (826), Expect = 2.1e-88
Identity = 167/278 (60.07%), Postives = 211/278 (75.90%), Query Frame = 1


Query: 5   FVTSKLAAFPIHIRKSPSPS--SLKISCCQFRS-PSSGAEDDDWRSFRAKLIATQKLSTP 64
           FVT K+A+ PI +  S S S   L+     F+   ++   D DWR FRA+L+A ++ +T 
Sbjct: 36  FVTRKVAS-PISVNCSLSDSWKPLEDDADLFKDCVNNSTSDADWREFRARLVAGEQAATS 95

Query: 65  QISS-SFVDLDTVVDHPPS----ISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVI 124
           +    S+ + D VVD+ PS    I+IG KWAH IH PE GCLLIATEKLDGVHIFE+TVI
Sbjct: 96  EKDQPSWSNPDMVVDYQPSSSSLITIGSKWAHKIHEPETGCLLIATEKLDGVHIFEKTVI 155

Query: 125 LLLSNGPLGPSGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKRN 184
           LLLS GP GP G+ILNRPSLMSIKET ST LD+AGTFS++ L+FGGPLEEGLFLVSP+  
Sbjct: 156 LLLSVGPSGPIGVILNRPSLMSIKETKSTILDMAGTFSDKRLFFGGPLEEGLFLVSPRSG 215

Query: 185 GEDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDE 244
           G++ VGKSGVF +VMKG+YYG++ESVG AAEMVKRN+VG  + RFFDGYCGW+K+QLK E
Sbjct: 216 GDNEVGKSGVFRQVMKGLYYGTRESVGLAAEMVKRNLVGRSELRFFDGYCGWEKEQLKAE 275

Query: 245 IKAGYWTVVACSPSLIQMD--VGNMGLWENLLGLLGPK 273
           I  GYWTV ACS +++++   V + GLW+ +LGL+GP+
Sbjct: 276 ILGGYWTVAACSSTVVELGSAVQSHGLWDEVLGLIGPQ 312

[Close]

BLAST of Lsi03G001540 vs. TAIR10
Match: AT1G33780.1 (AT1G33780.1 Protein of unknown function (DUF179))

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-46
Identity = 114/293 (38.91%), Postives = 157/293 (53.58%), Query Frame = 1


Query: 1   MEACFVTSKLAAFPIHI-------RKSPSPSSLKISCCQFRSPSSGAE------------ 60
           +E  F+  K++A P          +KS   SS      Q   PS+G +            
Sbjct: 36  LEFRFLNRKVSASPYRSLVVRATSKKSNDDSSSPGDASQENKPSNGNKSGDSAAPKSFGL 95

Query: 61  DDDWRSFRAKLIATQKLSTPQISSSFVDLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIA 120
           + DWR FRA L   ++    +                S  IG KWAH I  PE GC+L+A
Sbjct: 96  NTDWREFRANLFMKEQEEKAEAEGH-----------ESEPIGLKWAHPIPFPETGCVLVA 155

Query: 121 TEKLDGVHIFERTVILLLSNGPL----GPSGIILNRPSLMSIKETGSTALDVAGTFSEQA 180
           TEKLDG   F RTV+LLL  G      GP G+++NRP   +IK   ST  ++A TFSE +
Sbjct: 156 TEKLDGYRTFARTVVLLLRAGTRHPQEGPFGVVINRPLHKNIKHMKSTKTELATTFSECS 215

Query: 181 LYFGGPLEEGLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAE 240
           LYFGGPLE  +FL+   + G+    K   FEEVM G+ +G++ S+  AA +VK+ ++  +
Sbjct: 216 LYFGGPLEASMFLL---KTGDK--TKIPGFEEVMPGLNFGTRNSLDEAAVLVKKGVLKPQ 275

Query: 241 DFRFFDGYCGWDKDQLKDEIKAGYWTVVACSPSLIQMDVGNMGLWENLLGLLG 271
           +FRFF GY GW  DQL++EI++ YW V ACS  LI     +  LWE +L L+G
Sbjct: 276 EFRFFVGYAGWQLDQLREEIESDYWHVAACSSDLI-CGASSENLWEEILQLMG 311

[Close]

BLAST of Lsi03G001540 vs. TAIR10
Match: AT3G19780.1 (AT3G19780.1 LOCATED IN: endomembrane system)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-12
Identity = 49/152 (32.24%), Postives = 74/152 (48.68%), Query Frame = 1


Query: 96   GCLLIATEKLDGVHIFERTVILLLSNGP-LGPSGIILN-RPSLMSIKETGSTALDVAGTF 155
            G +L+ATEKL     F ++ IL++  GP +G  G+I N R    S  + G TA       
Sbjct: 904  GTVLVATEKLAASLTFAKSKILIIKAGPEIGFLGLIFNKRIRWKSFPDLGETA----ELL 963

Query: 156  SEQALYFGGPL-EEGLFLVSPKRNGEDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVKRN 215
             E  L FGGP+ + G+ L++  R  +          E+  G+Y+   +SV    + +K  
Sbjct: 964  KETPLSFGGPVVDPGIPLLALTRERDSSTNHD--HPEISPGVYFLDHQSVARRIQELKSR 1023

Query: 216  IVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTV 245
             +   ++ FF GY  W  +QL DEI  G W V
Sbjct: 1024 ELNPSEYWFFLGYSSWSYEQLFDEIGLGVWDV 1049

[Close]

BLAST of Lsi03G001540 vs. NCBI nr
Match: gi|449447651|ref|XP_004141581.1| (PREDICTED: uncharacterized protein LOC101213437 [Cucumis sativus])

HSP 1 Score: 525.4 bits (1352), Expect = 6.0e-146
Identity = 250/275 (90.91%), Postives = 264/275 (96.00%), Query Frame = 1


Query: 1   MEACFVTSKLAAFPIHIRKSPSPSSLKISCCQFRSPSSGAEDDDWRSFRAKLIATQKLST 60
           MEACFVTSK  +FPIH R+SP+PSSLKISCCQFRSP SG E+DDWRSFRAKLIATQKLST
Sbjct: 1   MEACFVTSKPTSFPIHTRRSPTPSSLKISCCQFRSPLSGGEEDDWRSFRAKLIATQKLST 60

Query: 61  PQISSSFVDLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLS 120
           PQISSSFVDLDTVVDHPPS+S+GEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLL+
Sbjct: 61  PQISSSFVDLDTVVDHPPSVSLGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLN 120

Query: 121 NGPLGPSGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKRNGEDG 180
           NG LGPSGIILNRPSLMSIKET STALDVAGTFSEQALYFGGPLE G+FLVSPK NGEDG
Sbjct: 121 NGQLGPSGIILNRPSLMSIKETRSTALDVAGTFSEQALYFGGPLEGGVFLVSPKTNGEDG 180

Query: 181 VGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAG 240
           VGKSGVFEEVMKGMYYG+KESVGCAAEMVKRN+VGAEDFRFFDGYCGW+KDQLKDEIKAG
Sbjct: 181 VGKSGVFEEVMKGMYYGTKESVGCAAEMVKRNLVGAEDFRFFDGYCGWEKDQLKDEIKAG 240

Query: 241 YWTVVACSPSLIQMDVGNMGLWENLLGLLGPKKVW 276
           YWTV ACSP+LIQMDVGN+GLW+NLL LLGPKKVW
Sbjct: 241 YWTVAACSPNLIQMDVGNVGLWDNLLSLLGPKKVW 275

[Close]

BLAST of Lsi03G001540 vs. NCBI nr
Match: gi|659118885|ref|XP_008459360.1| (PREDICTED: uncharacterized protein LOC103498517 [Cucumis melo])

HSP 1 Score: 513.1 bits (1320), Expect = 3.1e-142
Identity = 252/278 (90.65%), Postives = 264/278 (94.96%), Query Frame = 1


Query: 1   MEACFVTSKLAAFPIHIRKSPSPSSLKISCCQFRSPSS-GAEDDDWRSFRAKLIATQKLS 60
           MEACFVTSK  +FPIH RKSP+PSSLKISCCQFRSPSS G EDDDWRSFRAKLIATQKLS
Sbjct: 1   MEACFVTSKPTSFPIHTRKSPTPSSLKISCCQFRSPSSSGGEDDDWRSFRAKLIATQKLS 60

Query: 61  TPQISSSFVDLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLL 120
           TPQISSSFVDLDT VDHPPSIS+GEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLL
Sbjct: 61  TPQISSSFVDLDTAVDHPPSISLGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLL 120

Query: 121 SNGPLGPSGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKR-NG- 180
           +NG LGPSGIILNRPSLMSIKET STALDVAGTFSEQALYFGGPLEEG+FLVSPKR NG 
Sbjct: 121 NNGQLGPSGIILNRPSLMSIKETRSTALDVAGTFSEQALYFGGPLEEGVFLVSPKRSNGE 180

Query: 181 EDGVGKSGVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEI 240
           ED VGKSGVFEEVMKGMYYG+KESVGCAAEMVKRN+VGAEDFRFFDG CGW+KDQLKDEI
Sbjct: 181 EDAVGKSGVFEEVMKGMYYGTKESVGCAAEMVKRNLVGAEDFRFFDGCCGWEKDQLKDEI 240

Query: 241 KAGYWTVVACSPSLIQMDVGNMGLWENLLGLLGPKKVW 276
           KAGYWTV ACSP+LIQM+VGN+GLW+NLL LLGPKKVW
Sbjct: 241 KAGYWTVAACSPNLIQMEVGNVGLWDNLLSLLGPKKVW 278

[Close]

BLAST of Lsi03G001540 vs. NCBI nr
Match: gi|703073538|ref|XP_010089571.1| (hypothetical protein L484_020961 [Morus notabilis])

HSP 1 Score: 397.1 bits (1019), Expect = 2.5e-107
Identity = 199/269 (73.98%), Postives = 229/269 (85.13%), Query Frame = 1


Query: 16  HIRKSPSPSSLKISCC--QFRSPSSGAE----DDDWRSFRAKLIATQKL--STPQISSSF 75
           H RK  +PSS  I+CC  +  SPS   +    D DWRSFRAKL+A +++  S  + SSS 
Sbjct: 37  HHRKVATPSS--ITCCLPESYSPSDDDKKPLIDSDWRSFRAKLVAGEQVFRSQEEPSSST 96

Query: 76  VDLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLSNGPLGPS 135
           VDLDTVVDHPPSISIG+KWAH IH PEKGCLLIATEKLDGVHIFERTVILLLS GPLGPS
Sbjct: 97  VDLDTVVDHPPSISIGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSTGPLGPS 156

Query: 136 GIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKRNGEDGVGKSGVF 195
           GIILNRPSLMSIKETGSTALD+AGTFS++ L+FGGPLEEGLFLVSPK + +DGV KS VF
Sbjct: 157 GIILNRPSLMSIKETGSTALDIAGTFSDRPLFFGGPLEEGLFLVSPKGD-DDGVRKSEVF 216

Query: 196 EEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTVVAC 255
           EE+MKG+YYG+KESVGCAAEMVKRN++G  D RFFDGYCGW++DQLKDEI+AGYWTV AC
Sbjct: 217 EEIMKGLYYGTKESVGCAAEMVKRNMIGLGDIRFFDGYCGWERDQLKDEIRAGYWTVAAC 276

Query: 256 SPSLIQM-DVGNMGLWENLLGLLGPKKVW 276
           SPS+I +  VGN+GLWE +LGL+GP+KVW
Sbjct: 277 SPSVIGLGSVGNVGLWEEVLGLMGPRKVW 302

[Close]

BLAST of Lsi03G001540 vs. NCBI nr
Match: gi|734354147|gb|KHN13585.1| (Pentatricopeptide repeat-containing protein [Glycine soja])

HSP 1 Score: 383.6 bits (984), Expect = 2.8e-103
Identity = 192/271 (70.85%), Postives = 223/271 (82.29%), Query Frame = 1


Query: 16  HIRKSPSPSSLKISCCQFRSPSSGAEDD------DWRSFRAKLIATQKLSTP--QISSSF 75
           H RK+  P  L ISCC   SPS   +D+      DWRSFRAKL+A ++L+ P  ++S S 
Sbjct: 167 HYRKARIP--LPISCCHMSSPSPFDDDEKSTLSGDWRSFRAKLVAGEQLTRPVEEVSFSS 226

Query: 76  V-DLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLSNGPLGP 135
           V DLD VVDHPP I+IG+KWAHVIH PEKGC+LIATEKLDGVHIFERTVILLLS GPLGP
Sbjct: 227 VNDLDIVVDHPPLITIGDKWAHVIHEPEKGCILIATEKLDGVHIFERTVILLLSTGPLGP 286

Query: 136 SGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKR--NGEDGVGKS 195
           SGIILNRPSLMSIKET STALDV GTFS   L+FGGPLEEGLFL+SPK    G DGVGKS
Sbjct: 287 SGIILNRPSLMSIKETRSTALDVEGTFSNSPLFFGGPLEEGLFLLSPKEGGGGGDGVGKS 346

Query: 196 GVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTV 255
           GVFEEVMKG+YYG+KESVGCAAEMVKRN++G  DFRFFDGYCGW+K+QL+DEI+AGYWTV
Sbjct: 347 GVFEEVMKGLYYGAKESVGCAAEMVKRNVIGLGDFRFFDGYCGWEKEQLRDEIRAGYWTV 406

Query: 256 VACSPSLIQM-DVGNMGLWENLLGLLGPKKV 275
            ACSPS++ +  VG++GLW+ +LGL+  +KV
Sbjct: 407 AACSPSVVGLGSVGSIGLWDEVLGLMSRRKV 435

[Close]

BLAST of Lsi03G001540 vs. NCBI nr
Match: gi|356568698|ref|XP_003552547.1| (PREDICTED: UPF0301 protein BF2109-like [Glycine max])

HSP 1 Score: 383.6 bits (984), Expect = 2.8e-103
Identity = 192/271 (70.85%), Postives = 223/271 (82.29%), Query Frame = 1


Query: 16  HIRKSPSPSSLKISCCQFRSPSSGAEDD------DWRSFRAKLIATQKLSTP--QISSSF 75
           H RK+  P  L ISCC   SPS   +D+      DWRSFRAKL+A ++L+ P  ++S S 
Sbjct: 38  HYRKARIP--LPISCCHMSSPSPFDDDEKSTLSGDWRSFRAKLVAGEQLTRPVEEVSFSS 97

Query: 76  V-DLDTVVDHPPSISIGEKWAHVIHGPEKGCLLIATEKLDGVHIFERTVILLLSNGPLGP 135
           V DLD VVDHPP I+IG+KWAHVIH PEKGC+LIATEKLDGVHIFERTVILLLS GPLGP
Sbjct: 98  VNDLDIVVDHPPLITIGDKWAHVIHEPEKGCILIATEKLDGVHIFERTVILLLSTGPLGP 157

Query: 136 SGIILNRPSLMSIKETGSTALDVAGTFSEQALYFGGPLEEGLFLVSPKR--NGEDGVGKS 195
           SGIILNRPSLMSIKET STALDV GTFS   L+FGGPLEEGLFL+SPK    G DGVGKS
Sbjct: 158 SGIILNRPSLMSIKETRSTALDVEGTFSNSPLFFGGPLEEGLFLLSPKEGGGGGDGVGKS 217

Query: 196 GVFEEVMKGMYYGSKESVGCAAEMVKRNIVGAEDFRFFDGYCGWDKDQLKDEIKAGYWTV 255
           GVFEEVMKG+YYG+KESVGCAAEMVKRN++G  DFRFFDGYCGW+K+QL+DEI+AGYWTV
Sbjct: 218 GVFEEVMKGLYYGAKESVGCAAEMVKRNVIGLGDFRFFDGYCGWEKEQLRDEIRAGYWTV 277

Query: 256 VACSPSLIQM-DVGNMGLWENLLGLLGPKKV 275
            ACSPS++ +  VG++GLW+ +LGL+  +KV
Sbjct: 278 AACSPSVVGLGSVGSVGLWDEVLGLMSRRKV 306

The following BLAST results are available for this feature:

BLAST of Lsi03G001540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y2674_SHEDO	2.4e-09	30.00	UPF0301 protein Sden_2674 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1...	[more]
Y1773_CYTH3	3.1e-09	28.65	UPF0301 protein CHU_1773 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 94...	[more]
Y2948_STRCO	2.6e-08	31.40	UPF0301 protein SCO2948 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) ...	[more]
Y2109_BACFN	1.3e-07	26.98	UPF0301 protein BF2109 OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / J...	[more]
Y2056_BACFR	1.3e-07	26.98	UPF0301 protein BF2056 OS=Bacteroides fragilis (strain YCH46) GN=BF2056 PE=3 SV=...	[more]

BLAST of Lsi03G001540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSE6_CUCSA	4.2e-146	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G638340 PE=4 SV=1	[more]
W9QI97_9ROSA	1.7e-107	73.98	Uncharacterized protein OS=Morus notabilis GN=L484_020961 PE=4 SV=1	[more]
A0A0R0F4Z3_SOYBN	2.0e-103	70.85	Uncharacterized protein OS=Glycine max GN=GLYMA_18G263600 PE=4 SV=1	[more]
A0A0B2PWS7_GLYSO	2.0e-103	70.85	Pentatricopeptide repeat-containing protein OS=Glycine soja GN=glysoja_019272 PE...	[more]
A0A0B2NUC1_GLYSO	9.7e-103	64.90	UPF0301 protein OS=Glycine soja GN=glysoja_022222 PE=4 SV=1	[more]

BLAST of Lsi03G001540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29240.1	2.1e-88	60.07	Protein of unknown function (DUF179)	[more]
AT1G33780.1	2.6e-46	38.91	Protein of unknown function (DUF179)	[more]
AT3G19780.1	4.1e-12	32.24	LOCATED IN: endomembrane system	[more]

BLAST of Lsi03G001540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447651\|ref\|XP_004141581.1\|	6.0e-146	90.91	PREDICTED: uncharacterized protein LOC101213437 [Cucumis sativus]	[more]
gi\|659118885\|ref\|XP_008459360.1\|	3.1e-142	90.65	PREDICTED: uncharacterized protein LOC103498517 [Cucumis melo]	[more]
gi\|703073538\|ref\|XP_010089571.1\|	2.5e-107	73.98	hypothetical protein L484_020961 [Morus notabilis]	[more]
gi\|734354147\|gb\|KHN13585.1\|	2.8e-103	70.85	Pentatricopeptide repeat-containing protein [Glycine soja]	[more]
gi\|356568698\|ref\|XP_003552547.1\|	2.8e-103	70.85	PREDICTED: UPF0301 protein BF2109-like [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003774	UPF0301

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G001540.1	Lsi03G001540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003774	Protein of unknown function UPF0301	PFAM	PF02622	DUF179	coord: 110..270 score: 1.5
None	No IPR available	GENE3D	G3DSA:3.40.1740.10		coord: 226..270 score: 7.8E-17coord: 86..132 score: 7.8
None	No IPR available	PANTHER	PTHR31984	FAMILY NOT NAMED	coord: 15..272 score: 3.3E
None	No IPR available	PANTHER	PTHR31984:SF3	SUBFAMILY NOT NAMED	coord: 15..272 score: 3.3E
None	No IPR available	unknown	SSF143456	VC0467-like	coord: 84..272 score: 8.24

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G001540	Csa5G638340	Cucumber (Chinese Long) v2	culsiB353
Lsi03G001540	CSPI05G29240	Wild cucumber (PI 183967)	cpilsiB357
Lsi03G001540	Cucsa.158000	Cucumber (Gy14) v1	cgylsiB254
Lsi03G001540	CmaCh04G027900	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G001540	CmoCh04G029230	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G001540	Cla016537	Watermelon (97103) v1	lsiwmB278
Lsi03G001540	MELO3C022019	Melon (DHL92) v3.5.1	lsimeB233
Lsi03G001540	ClCG11G004610	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G001540	MELO3C022019.2	Melon (DHL92) v3.6.1	lsimedB243
Lsi03G001540	Cla97C11G211380	Watermelon (97103) v2	lsiwmbB222
Lsi03G001540	Bhi06G000293	Wax gourd	lsiwgoB312
Lsi03G001540	Cp4.1LG01g22620	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G001540	Carg05872	Silver-seed gourd	carlsiB017
Lsi03G001540	CsaV3_5G038380	Cucumber (Chinese Long) v3	cuclsiB378

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G001540	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G001540	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G001540	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G001540	Wild cucumber (PI 183967)	cpilsiB362
Lsi03G001540	Cucumber (Chinese Long) v2	culsiB359
Lsi03G001540	Melon (DHL92) v3.5.1	lsimeB238
Lsi03G001540	Watermelon (Charleston Gray)	lsiwcgB245
Lsi03G001540	Cucumber (Gy14) v2	cgyblsiB325
Lsi03G001540	Melon (DHL92) v3.6.1	lsimedB249
Lsi03G001540	Silver-seed gourd	carlsiB236
Lsi03G001540	Cucumber (Chinese Long) v3	cuclsiB384