Lsi03G000990 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G000990
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCystathionine beta-synthase (CBS) family protein
Locationchr03 : 1398864 .. 1403794 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGTCTGATCTACATATTGGCCACGCCTGGTTACGACACGTGGATCCTAAATAGTGACAACCAGTACGGTGACGGTTTGTTTAAATCTCTTCCGATAACAGGCGGGTAAGAATTAGCGGGTTTTAGTCACAGTCACTGTTTATTATCTTCTACTGCAAAAACTGCAGCATTCTCCTCACTCGAGCTTCACGAACCTTGGCGACTGTGGAGGGCCGGAGGGGTTTTTGATTTGTTTCGTCAAGGTTCTCGCATGGAGTCGATTGGTTGTAGTTTGAGTTCTTTATCGTTGGCTCAATTCAGGGTGAAGAGTTTTTCGGTTCAGGAGCTGTTATTTGGTCATCGCCGGAGCCTTCCATCGCCGATAGTTCATGCATCGGTGGCTCAGATCTTTCCGGAGCTTCGAAAATCTACTTCTCTTGCTGCTAGTGGTACCTTGATGGCCAATTCCGTGCCGGTGTGTTGTTCTGTTTAGTATTATTGTTATTTCTGTTTTTCGTCTTTTATATGTGAGTATTGGTGAATTCGATTTGTTGGTAGTTTGTCTCGAATGTTTCGTTGTGATTGAGATGGATATACTTTCTCGATTTGAATTTTCTGGTAAGTGTAATTTGATGGAACTTGGAGAATGGGAAATGTTGTCGGAGAACTTAAATTTTGAGTGAGTTCGTGTTTTGTTAGAAGAACTTAACGAATTTACATAATGATTTTGAGGTATGGAGCTTAGTACATTTTGATGGTTCATTCTGATCATTAATTGCTGCTGAGTTTTTCTATGTTCCTCTTTATTTGATTTCGAAAAGTCAGGGTTGTGCTTGAAATTTATACTCATGATCATTGTTCTACTGAATAACTGTACTTCTCTGACTTGTTCTCATCTTCTAATTTTTCCAGGGTATTAGAAATTTATTCTTCTTTCTTTAATATTTTGATATGCAGTCAAGAAGTGGTGTATACATAGTTGGTGACTTTATGACTAGGAAAGAGGAGTTGCATGTTGTAAAGCCCACAACCAGTGTTGATGAAGGTAGTTGAAATTTTTGGAAATTTTCCTCCAACCTATTGGCAAAATGTGGCTTATTGTGTCTGTTTATGCATACAGCATTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAATTGGTATCATTTCATTTCCCATATTTATTAGAGACATTTCTCTAATATAGTTATGTTTTTATCTTGTTGGCCCGTTTGCAAGTATATCTGGTTTATCTAACATCCGCATATTGGCCCATGAAACCTTTCCTCTGAAGTTGTTGAGTTCTGTCCAGGATTTTGAATCGTCAAGTTTTCACTTTTCACACTATCACTTGTATGATCATGAGAATCTAATTTTTCGGTCTGTTCCCCGTCCATAACTGAATTGGGAAAGCATATGTTGCCTCCCCCACAATTTGTTTTGAATGTCGTATTGAATTTGGAAGTCAAGACAGATGGCACATGTTGCTTAGTGCTATACAAGTCGATCCGTTGCCTTTTTTTTTTCAGATCCTGATCAGGATGAATACAACCTTTAATGCTTATAATTTGTGTGAATTGAAGCTCGTGTGACTTTTTTTTTTTTTTTTTTTGTGCTCTCATACACCTTTATCTGTATTATCAATGAAGTGTATGATTGATTGGCCTAACGTTGGATACTTAATCATCGATGCTCATAATAGAAATTGCTTCTTGATGCAGGTTGGCGTAGTTTCTGACTACGACTTGTTAGCACTAGATTCCATCTCAGGTATATTTGAAATTTCTTGTTATTCCTGTCAGCAAGTTGTCTAATTCCCACTCCTTGCCACTACCATCGTTTATCCTGTTTGAGAAAGATTGCTCAGTTGTCTTATCTTTTATGTTTGTTGCATATTTAGCTATGATTGTTTTTCAGGAAAGAAGAGAGAATTGGCTTTTGTAGATCTTTATATTTATATTTAGATAACTCAAGTTTCTGTACTTGACTCTCTTTTCCTATACTTTTTTGCAAGATTAGTATTGACTTTTTTTGCACCTATTGATTCTCTTTTTTCCAATTTGTTCAAAAGATAAAAGGTTAAAATGTCATTTTGGTTCTATACTTGGCTTTTCATCCCATTTTAGTCCCTACACTTTCAACAAATCTTAAATAAGTCTTAAATTTAGTCCCTTTACTTTTACTAAATCTTAAATTTATCCTATTTAGTTTGAGTAAATAAATTTAGTCCTTCGAAGAGACACCATGGGAGTCTATTTTCTAAATTCATAAAGGGAATATTAATATCAACTTTTTTTAAAAAAATATATCAATAATAACATTCTAACAGCTGACAGCTGGATTAAATTTAACACGTGAACTAAATTTGGACAATTGAAAGTATCAGTTATCTCTGATCCAAGAAAGGACTGATTTTCTTGTCATAACAAATGGTTTTATAGGTGTGGATATTGCAGATTTTTGGTTTTGTAATCTGAGGAACTTGGTCTGACCGCACTCATATAAGTTCAAGTATTTTAGAGTGATAAAATTTTCAATGTTCTAATTAGGTGGTGGAAGGACAGATACAAGCATGTTTCCTGAAGTTGACAGCTCGTGGAAAGTATGTATTGACCTCCTTTTTTTTTTTTTTTTTTTTGGCATTTACGTTTATTTGTAGTTGTTTTGTTTCACACCTTTTGCCATCAGTGTTCCCGATAACTTTATTTGTGCAATAATTTTATCCGAGTACTAAATGAAGTAGAAAACTGAACTTATGAAAAAATTTACATAAAGTAAGAGTTACTGTATTTAATTCGTTGGACAACGTGCTTAAACCTTTCAATTTACATAAAGAAGTATGATTTAAATTTACTGGTCAAAGATTTCATTTTCATGCATAGTGTTTATACCTCAGTGAGCACTGATATAGGCCTTGGTTTGTCTCTTCATTTATGCTTTTGGTTCTTTTTTCTTCCTTATGAACGTCAGTGTCGGATTTGGCAAGAGGCATATGAAGGGTAAACTGTGCACTTTACCAAAATAATTTTGTTTTCTCCTACTTTTCATAATTCTGACTTCAAATTGATGTTAATCTGTTGCTTGCTTATTTCAATTGCCTGCTACTTACTAGTTTGTAGAGGACATCAAATGGAAATATTTTGCACAAATGATGTCTCTAATCCTAAATCATCCTTGTAGACATTTAATGAGGTACAAAAGCTTCTAAGTAAAACTAATGGAAAGGTGGTCGGCGATTTGATGACACCCGCACCTCTTGTTGTTCGAGAAATTACCGATCTTGAGGATGTTGCTAGGTTCAAAAACGCTTTTCTCCACCGTTTCCGTAACATATCATTTTTGCCCTTGCGCTTGAATTTTGAAGCGTGTTCCTTTCTATTTTGTCAAATGCAGATTATTGCTTCAGACAAAGTATCGCCGACTTCCCGTGGTCGACGCCGATGGAAAGCTGGTAAGAGATATCTATTCCACTCTTCTAATGTGAATTTAATGGTGGTTCTCTCCCTCATATCTTAGCGTGAAATTATGATATCTTTAATGAAGGTTGGAATTATTACAAGAGGCAATGTGGTAAGAGCTGCTCTACAAATTAAGCATGCTGAAGAAAACAGAACATGATTTTTCCTATAGGTAGAAACAGAGTCAATCTGCATGCTGTTAGCACAGAGGATTCTGAAGTGCAATCATACAATTTTGGCTCATGATTGTATAAATATTACAGCACAACCAAAACCTGAATGACATAAATGCATTATCATATGCTCAAATGTCTAGTCTCTCTTCAACCCTTCTTTTCCTTTCCTTTCTTTTTTTGTTTCTATATTTTGAATCCCAAGCTTGGATTATCCTTATGATATATGGTATTATAGTTGGTCATTTGAGCAAGCTGTAAATGTTGGGGTTATTAACAGGAGATTAAATTGCGAGTCTATTTTCTAAACTTTCAGTTTGTGTCCAATATGTTGAAGGTTAATTTTGTGTATGGAAGGATCTATTGGGCATTAAATAGGATATTATACTTTCAGTCATCTTTATAGTATTTTTTTTTTTTAAAAGATAAATTTTACATGGAGAATCCTTTCTACCCCATAAATTTTATAAATGTCTTAAAATTGTGTTAGTTTCGAATTTTTTACTTTCAAATTTTGTTCTCTAGGAAATGAAAGTTTAGGATGAAAAAAAAACCCGAAATGATCTGAAAATGAGGTTAAAAATAAATTTAGAATTTTTATTTTCAAATTCTGTTTCTAGGAAATGAAAGTTCGGTATTATAGAGATATATGAGCTATATTTTCATGATATTTTTTTTTTTTTTGNACTAGTTTGTAGAGGACATCAAATGGAAATATTTTGCACAAATGATGTCTCTAATCCTAAATCATCCTTGTAGACATTTAATGAGGTACAAAAGCTTCTAAGTAAAACTAATGGAAAGGTGGTCGGCGATTTGATGACACCCGCACCTCTTGTTGTTCGAGAAATTACCGATCTTGAGGATGTTGCTAGGTTCAAAAACGCTTTTCTCCACCGTTTCCGTAACATATCATTTTTGCCCTTGCGCTTGAATTTTGAAGCGTGTTCCTTTCTATTTTGTCAAATGCAGATTATTGCTTCAGACAAAGTATCGCCGACTTCCCGTGGTCGACGCCGATGGAAAGCTGGTAAGAGATATCTATTCCACTCTTCTAATGTGAATTTAATGGTGGTTCTCTCCCTCATATCTTAGCGTGAAATTATGATATCTTTAATGAAGGTTGGAATTATTACAAGAGGCAATGTGGTAAGAGCTGCTCTACAAATTAAGCATGCTGAAGAAAACAGAACATGATTTTTCCTATAGGTAGAAACAGAGTCAATCTGCATGCTGTTAGCACAGAGGATTCTGAAGTGCAATCATACAATTTTGGCTCATGATTGTATAAATA

mRNA sequence

CACCGTCTGATCTACATATTGGCCACGCCTGGTTACGACACGTGGATCCTAAATAGTGACAACCAGTACGGTGACGCATTCTCCTCACTCGAGCTTCACGAACCTTGGCGACTGTGGAGGGCCGGAGGGGTTTTTGATTTGTTTCGTCAAGGTTCTCGCATGGAGTCGATTGGTTGTAGTTTGAGTTCTTTATCGTTGGCTCAATTCAGGGTGAAGAGTTTTTCGGTTCAGGAGCTGTTATTTGGTCATCGCCGGAGCCTTCCATCGCCGATAGTTCATGCATCGGTGGCTCAGATCTTTCCGGAGCTTCGAAAATCTACTTCTCTTGCTGCTAGTGGTACCTTGATGGCCAATTCCGTGCCGTCAAGAAGTGGTGTATACATAGTTGGTGACTTTATGACTAGGAAAGAGGAGTTGCATGTTGTAAAGCCCACAACCAGTGTTGATGAAGCATTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAATTGATCCTGATCAGGATGAATACAACCTTTAATGCTTATAATTTGTGTGAATTGAAGCTCGTTGGCGTAGTTTCTGACTACGACTTGTTAGCACTAGATTCCATCTCAGGTATATTTGAAATTTCTTGTTATTCCTGTGGTGGAAGGACAGATACAAGCATGTTTCCTGAAGTTGACAGCTCGTGGAAAACATTTAATGAGGTACAAAAGCTTCTAAGTAAAACTAATGGAAAGGTGGTCGGCGATTTGATGACACCCGCACCTCTTGTTGTTCGAGAAATTACCGATCTTGAGGATGTTGCTAGGTTCAAAAACGCTTTTCTCCACCGTTTCCGTAACATATCATTTTTGCCCTTGCGCTTGAATTTTGAAGCGTGTTCCTTTCTATTTTGTCAAATGCAGATTATTGCTTCAGACAAAGTATCGCCGACTTCCCGTGGTCGACGCCGATGGAAAGCTGGTAAGAGATATCTATTCCACTCTTCTAATGTGAATTTAATGGTGACATTTAATGAGGTACAAAAGCTTCTAAGTAAAACTAATGGAAAGGTGGTCGGCGATTTGATGACACCCGCACCTCTTGTTGTTCGAGAAATTACCGATCTTGAGGATGTTGCTAGATTATTGCTTCAGACAAAGTATCGCCGACTTCCCGTGGTCGACGCCGATGGAAAGCTGGTTGGAATTATTACAAGAGGCAATGTGGTAAGAGCTGCTCTACAAATTAAGCATGCTGAAGAAAACAGAACATGATTTTTCCTATAGGTAGAAACAGAGTCAATCTGCATGCTGTTAGCACAGAGGATTCTGAAGTGCAATCATACAATTTTGGCTCATGATTGTATAAATA

Coding sequence (CDS)

CACCGTCTGATCTACATATTGGCCACGCCTGGTTACGACACGTGGATCCTAAATAGTGACAACCAGTACGGTGACGCATTCTCCTCACTCGAGCTTCACGAACCTTGGCGACTGTGGAGGGCCGGAGGGGTTTTTGATTTGTTTCGTCAAGGTTCTCGCATGGAGTCGATTGGTTGTAGTTTGAGTTCTTTATCGTTGGCTCAATTCAGGGTGAAGAGTTTTTCGGTTCAGGAGCTGTTATTTGGTCATCGCCGGAGCCTTCCATCGCCGATAGTTCATGCATCGGTGGCTCAGATCTTTCCGGAGCTTCGAAAATCTACTTCTCTTGCTGCTAGTGGTACCTTGATGGCCAATTCCGTGCCGTCAAGAAGTGGTGTATACATAGTTGGTGACTTTATGACTAGGAAAGAGGAGTTGCATGTTGTAAAGCCCACAACCAGTGTTGATGAAGCATTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAATTGATCCTGATCAGGATGAATACAACCTTTAATGCTTATAATTTGTGTGAATTGAAGCTCGTTGGCGTAGTTTCTGACTACGACTTGTTAGCACTAGATTCCATCTCAGGTATATTTGAAATTTCTTGTTATTCCTGTGGTGGAAGGACAGATACAAGCATGTTTCCTGAAGTTGACAGCTCGTGGAAAACATTTAATGAGGTACAAAAGCTTCTAAGTAAAACTAATGGAAAGGTGGTCGGCGATTTGATGACACCCGCACCTCTTGTTGTTCGAGAAATTACCGATCTTGAGGATGTTGCTAGGTTCAAAAACGCTTTTCTCCACCGTTTCCGTAACATATCATTTTTGCCCTTGCGCTTGAATTTTGAAGCGTGTTCCTTTCTATTTTGTCAAATGCAGATTATTGCTTCAGACAAAGTATCGCCGACTTCCCGTGGTCGACGCCGATGGAAAGCTGGTAAGAGATATCTATTCCACTCTTCTAATGTGAATTTAATGGTGACATTTAATGAGGTACAAAAGCTTCTAAGTAAAACTAATGGAAAGGTGGTCGGCGATTTGATGACACCCGCACCTCTTGTTGTTCGAGAAATTACCGATCTTGAGGATGTTGCTAGATTATTGCTTCAGACAAAGTATCGCCGACTTCCCGTGGTCGACGCCGATGGAAAGCTGGTTGGAATTATTACAAGAGGCAATGTGGTAAGAGCTGCTCTACAAATTAAGCATGCTGAAGAAAACAGAACATGA

Protein sequence

HRLIYILATPGYDTWILNSDNQYGDAFSSLELHEPWRLWRAGGVFDLFRQGSRMESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVARFKNAFLHRFRNISFLPLRLNFEACSFLFCQMQIIASDKVSPTSRGRRRWKAGKRYLFHSSNVNLMVTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVARLLLQTKYRRLPVVDADGKLVGIITRGNVVRAALQIKHAEENRT
BLAST of Lsi03G000990 vs. Swiss-Prot
Match: CBSX1_ARATH (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-51
Identity = 120/212 (56.60%), Postives = 137/212 (64.62%), Query Frame = 1

Query: 64  LSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRK--STSLAASGTLMANSVP 123
           LS    R  S      L   R     P    + ++ FP   +  S S AA  TLM NS  
Sbjct: 10  LSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTNSSS 69

Query: 124 SRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLILIRMNTTF 183
            RSGVY VG+FMT+KE+LHVVKPTT+VDEALE+LVE RITGFPVID++W           
Sbjct: 70  PRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW----------- 129

Query: 184 NAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSWKTFNEVQK 243
                   KLVG+VSDYDLLALDSISG          GRT+ SMFPEVDS+WKTFN VQK
Sbjct: 130 --------KLVGLVSDYDLLALDSISG---------SGRTENSMFPEVDSTWKTFNAVQK 189

Query: 244 LLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           LLSKTNGK+VGDLMTPAPLVV E T+LED A+
Sbjct: 190 LLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAK 193

BLAST of Lsi03G000990 vs. Swiss-Prot
Match: CBSX2_ARATH (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.1e-45
Identity = 100/174 (57.47%), Postives = 123/174 (70.69%), Query Frame = 1

Query: 101 PELRKSTSLAASGTLMAN-SVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKR 160
           P +  S   AA  ++  N SVP+++G Y VGDFMT ++ LHVVKP+TSVD+ALE+LVEK+
Sbjct: 50  PSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKK 109

Query: 161 ITGFPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGG 220
           +TG PVIDDNW L                   VGVVSDYDLLALDSISG           
Sbjct: 110 VTGLPVIDDNWTL-------------------VGVVSDYDLLALDSISG---------RS 169

Query: 221 RTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           + DT++FP+VDS+WKTFNE+QKL+SKT GKVVGDLMTP+PLVVR+ T+LED AR
Sbjct: 170 QNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAAR 195

BLAST of Lsi03G000990 vs. Swiss-Prot
Match: IMDH_PYRFU (Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-06
Identity = 28/75 (37.33%), Postives = 48/75 (64.00%), Query Frame = 1

Query: 345 QKLLSKTNGKVVGDLMTPAPLVVREITDLEDVARLLLQTKYRRLPVVDADGKLVGIITRG 404
           +K ++   G+ V +LMT   + V E  D+E+  +++++ +  RLPVV+ DGKLVG+IT  
Sbjct: 141 KKDIAAREGRTVKELMTREVITVPESVDVEEALKIMMENRIDRLPVVNEDGKLVGLITMS 200

Query: 405 NVVRAALQIKHAEEN 420
           ++V A  + K+A  N
Sbjct: 201 DLV-ARKKYKNAVRN 214

BLAST of Lsi03G000990 vs. TrEMBL
Match: A0A0A0LSY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G152500 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 6.9e-84
Identity = 176/220 (80.00%), Postives = 181/220 (82.27%), Query Frame = 1

Query: 54  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASG 113
           MESIGCSLSSLSLA FR KSFSVQE+LFG  R    PI+HASVAQ FPELRKSTS+AASG
Sbjct: 1   MESIGCSLSSLSLAPFRAKSFSVQEMLFGPCRRPSLPILHASVAQSFPELRKSTSIAASG 60

Query: 114 TLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLI 173
           TLMANSVPS +GVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNW   
Sbjct: 61  TLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNW--- 120

Query: 174 LIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSW 233
                           KLVGVVSDYDLLALDSISG         GGRTDTSMFPEVDSSW
Sbjct: 121 ----------------KLVGVVSDYDLLALDSISG---------GGRTDTSMFPEVDSSW 180

Query: 234 KTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           KTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Sbjct: 181 KTFNEVQRLLSKTNGKVVGDLMTTAPLVVREITDLEDVAR 192

BLAST of Lsi03G000990 vs. TrEMBL
Match: F6H4H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00200 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.0e-56
Identity = 126/195 (64.62%), Postives = 143/195 (73.33%), Query Frame = 1

Query: 79  LLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEE 138
           LLF   R  P      S ++    +R+S +LAA+GTLMANSVPS++GVY VGDFMTRKE+
Sbjct: 38  LLFQPGRKPPVGSTVGSRSERISGIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKED 97

Query: 139 LHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDY 198
           LHVVK TT+V+EALEILVE RITGFPVIDD+W                   KLVG+VSDY
Sbjct: 98  LHVVKATTTVEEALEILVENRITGFPVIDDDW-------------------KLVGLVSDY 157

Query: 199 DLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPA 258
           DLLALDSISG         GG TDT MFPEVDS+WKTFNE+QKLLSKTNGKVVGDLMTPA
Sbjct: 158 DLLALDSISG---------GGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPA 204

Query: 259 PLVVREITDLEDVAR 274
           P+VVRE T+LED AR
Sbjct: 218 PVVVRETTNLEDAAR 204

BLAST of Lsi03G000990 vs. TrEMBL
Match: W9QU25_9ROSA (CBS domain-containing protein CBSX1 OS=Morus notabilis GN=L484_007219 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.0e-54
Identity = 118/171 (69.01%), Postives = 133/171 (77.78%), Query Frame = 1

Query: 103 LRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITG 162
           LR+S+ +AA+GTL ANSVP++SG+Y VGDFMT+KE LHVVKPTT+VDEALE LVE RITG
Sbjct: 62  LRRSSVIAANGTLTANSVPAKSGLYTVGDFMTKKEHLHVVKPTTTVDEALETLVENRITG 121

Query: 163 FPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTD 222
           FPVIDD+W                   KLVG+VSDYDLLALDSI G         GGR D
Sbjct: 122 FPVIDDDW-------------------KLVGLVSDYDLLALDSIFG---------GGRPD 181

Query: 223 TSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           TS+FPEVDS+WKTFNEVQKLLSKTNGKVVGDLMTPAP+VVRE T+LED AR
Sbjct: 182 TSLFPEVDSTWKTFNEVQKLLSKTNGKVVGDLMTPAPVVVRETTNLEDAAR 204

BLAST of Lsi03G000990 vs. TrEMBL
Match: A0A067GKB8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025613mg PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.6e-54
Identity = 120/176 (68.18%), Postives = 133/176 (75.57%), Query Frame = 1

Query: 103 LRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITG 162
           LR+S+++ ASGTL ANS    SGVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITG
Sbjct: 59  LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG 118

Query: 163 FPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTD 222
           FPVIDD+W                   KLVG+VSDYDLLALDSISG          GR D
Sbjct: 119 FPVIDDDW-------------------KLVGLVSDYDLLALDSISG---------SGRAD 178

Query: 223 TSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVARFKNAF 279
            SMFPEVDS+WKTFNEVQKLLSKTNGK+VGDLMTPAP+VVRE T+LED AR  ++F
Sbjct: 179 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206

BLAST of Lsi03G000990 vs. TrEMBL
Match: V4UIP4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026357mg PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.7e-54
Identity = 120/176 (68.18%), Postives = 132/176 (75.00%), Query Frame = 1

Query: 103 LRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITG 162
           LR+S+ + ASGTL ANS    SGVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITG
Sbjct: 59  LRRSSVVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG 118

Query: 163 FPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTD 222
           FPVIDD+W                   KLVG+VSDYDLLALDSISG          GR D
Sbjct: 119 FPVIDDDW-------------------KLVGLVSDYDLLALDSISG---------SGRAD 178

Query: 223 TSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVARFKNAF 279
            SMFPEVDS+WKTFNEVQKLLSKTNGK+VGDLMTPAP+VVRE T+LED AR  ++F
Sbjct: 179 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206

BLAST of Lsi03G000990 vs. TAIR10
Match: AT4G36910.1 (AT4G36910.1 Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 204.9 bits (520), Expect = 9.7e-53
Identity = 120/212 (56.60%), Postives = 137/212 (64.62%), Query Frame = 1

Query: 64  LSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRK--STSLAASGTLMANSVP 123
           LS    R  S      L   R     P    + ++ FP   +  S S AA  TLM NS  
Sbjct: 10  LSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTNSSS 69

Query: 124 SRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLILIRMNTTF 183
            RSGVY VG+FMT+KE+LHVVKPTT+VDEALE+LVE RITGFPVID++W           
Sbjct: 70  PRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW----------- 129

Query: 184 NAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSWKTFNEVQK 243
                   KLVG+VSDYDLLALDSISG          GRT+ SMFPEVDS+WKTFN VQK
Sbjct: 130 --------KLVGLVSDYDLLALDSISG---------SGRTENSMFPEVDSTWKTFNAVQK 189

Query: 244 LLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           LLSKTNGK+VGDLMTPAPLVV E T+LED A+
Sbjct: 190 LLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAK 193

BLAST of Lsi03G000990 vs. TAIR10
Match: AT4G34120.1 (AT4G34120.1 Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 184.1 bits (466), Expect = 1.8e-46
Identity = 100/174 (57.47%), Postives = 123/174 (70.69%), Query Frame = 1

Query: 101 PELRKSTSLAASGTLMAN-SVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKR 160
           P +  S   AA  ++  N SVP+++G Y VGDFMT ++ LHVVKP+TSVD+ALE+LVEK+
Sbjct: 50  PSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKK 109

Query: 161 ITGFPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGG 220
           +TG PVIDDNW L                   VGVVSDYDLLALDSISG           
Sbjct: 110 VTGLPVIDDNWTL-------------------VGVVSDYDLLALDSISG---------RS 169

Query: 221 RTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           + DT++FP+VDS+WKTFNE+QKL+SKT GKVVGDLMTP+PLVVR+ T+LED AR
Sbjct: 170 QNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAAR 195

BLAST of Lsi03G000990 vs. NCBI nr
Match: gi|449443418|ref|XP_004139474.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 1.0e-83
Identity = 176/220 (80.00%), Postives = 181/220 (82.27%), Query Frame = 1

Query: 54  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASG 113
           MESIGCSLSSLSLA FR KSFSVQE+LFG  R    PI+HASVAQ FPELRKSTS+AASG
Sbjct: 1   MESIGCSLSSLSLAPFRAKSFSVQEMLFGPCRRPSLPILHASVAQSFPELRKSTSIAASG 60

Query: 114 TLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLI 173
           TLMANSVPS +GVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNW   
Sbjct: 61  TLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNW--- 120

Query: 174 LIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSW 233
                           KLVGVVSDYDLLALDSISG         GGRTDTSMFPEVDSSW
Sbjct: 121 ----------------KLVGVVSDYDLLALDSISG---------GGRTDTSMFPEVDSSW 180

Query: 234 KTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           KTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Sbjct: 181 KTFNEVQRLLSKTNGKVVGDLMTTAPLVVREITDLEDVAR 192

BLAST of Lsi03G000990 vs. NCBI nr
Match: gi|659071762|ref|XP_008461810.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 175/220 (79.55%), Postives = 179/220 (81.36%), Query Frame = 1

Query: 54  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASG 113
           MESI CSLSSLSLA  R KSFSVQE+LFG  R L  PI+HASVAQ FPELRKSTSLAASG
Sbjct: 1   MESIVCSLSSLSLAHLRAKSFSVQEMLFGPCRRLSLPILHASVAQSFPELRKSTSLAASG 60

Query: 114 TLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLI 173
           TLMANSVPS +GVY VGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNW   
Sbjct: 61  TLMANSVPSGTGVYTVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDDNW--- 120

Query: 174 LIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSW 233
                           KLVGVVSDYDLLALDSISG         GGRTDTSMFPEVDSSW
Sbjct: 121 ----------------KLVGVVSDYDLLALDSISG---------GGRTDTSMFPEVDSSW 180

Query: 234 KTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           KTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Sbjct: 181 KTFNEVQRLLSKTNGKVVGDLMTTAPLVVREITDLEDVAR 192

BLAST of Lsi03G000990 vs. NCBI nr
Match: gi|225438783|ref|XP_002283079.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Vitis vinifera])

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 126/195 (64.62%), Postives = 143/195 (73.33%), Query Frame = 1

Query: 79  LLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEE 138
           LLF   R  P      S ++    +R+S +LAA+GTLMANSVPS++GVY VGDFMTRKE+
Sbjct: 38  LLFQPGRKPPVGSTVGSRSERISGIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKED 97

Query: 139 LHVVKPTTSVDEALEILVEKRITGFPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDY 198
           LHVVK TT+V+EALEILVE RITGFPVIDD+W                   KLVG+VSDY
Sbjct: 98  LHVVKATTTVEEALEILVENRITGFPVIDDDW-------------------KLVGLVSDY 157

Query: 199 DLLALDSISGIFEISCYSCGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPA 258
           DLLALDSISG         GG TDT MFPEVDS+WKTFNE+QKLLSKTNGKVVGDLMTPA
Sbjct: 158 DLLALDSISG---------GGLTDTIMFPEVDSTWKTFNELQKLLSKTNGKVVGDLMTPA 204

Query: 259 PLVVREITDLEDVAR 274
           P+VVRE T+LED AR
Sbjct: 218 PVVVRETTNLEDAAR 204

BLAST of Lsi03G000990 vs. NCBI nr
Match: gi|703088323|ref|XP_010093504.1| (CBS domain-containing protein CBSX1 [Morus notabilis])

HSP 1 Score: 221.5 bits (563), Expect = 2.8e-54
Identity = 118/171 (69.01%), Postives = 133/171 (77.78%), Query Frame = 1

Query: 103 LRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITG 162
           LR+S+ +AA+GTL ANSVP++SG+Y VGDFMT+KE LHVVKPTT+VDEALE LVE RITG
Sbjct: 62  LRRSSVIAANGTLTANSVPAKSGLYTVGDFMTKKEHLHVVKPTTTVDEALETLVENRITG 121

Query: 163 FPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTD 222
           FPVIDD+W                   KLVG+VSDYDLLALDSI G         GGR D
Sbjct: 122 FPVIDDDW-------------------KLVGLVSDYDLLALDSIFG---------GGRPD 181

Query: 223 TSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR 274
           TS+FPEVDS+WKTFNEVQKLLSKTNGKVVGDLMTPAP+VVRE T+LED AR
Sbjct: 182 TSLFPEVDSTWKTFNEVQKLLSKTNGKVVGDLMTPAPVVVRETTNLEDAAR 204

BLAST of Lsi03G000990 vs. NCBI nr
Match: gi|641860430|gb|KDO79119.1| (hypothetical protein CISIN_1g025613mg [Citrus sinensis])

HSP 1 Score: 221.1 bits (562), Expect = 3.7e-54
Identity = 120/176 (68.18%), Postives = 133/176 (75.57%), Query Frame = 1

Query: 103 LRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITG 162
           LR+S+++ ASGTL ANS    SGVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITG
Sbjct: 59  LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG 118

Query: 163 FPVIDDNWKLILIRMNTTFNAYNLCELKLVGVVSDYDLLALDSISGIFEISCYSCGGRTD 222
           FPVIDD+W                   KLVG+VSDYDLLALDSISG          GR D
Sbjct: 119 FPVIDDDW-------------------KLVGLVSDYDLLALDSISG---------SGRAD 178

Query: 223 TSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVARFKNAF 279
            SMFPEVDS+WKTFNEVQKLLSKTNGK+VGDLMTPAP+VVRE T+LED AR  ++F
Sbjct: 179 NSMFPEVDSTWKTFNEVQKLLSKTNGKMVGDLMTPAPVVVRETTNLEDAARSSHSF 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CBSX1_ARATH1.7e-5156.60CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CB... [more]
CBSX2_ARATH3.1e-4557.47CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CB... [more]
IMDH_PYRFU8.3e-0637.33Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587... [more]
Match NameE-valueIdentityDescription
A0A0A0LSY7_CUCSA6.9e-8480.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G152500 PE=4 SV=1[more]
F6H4H6_VITVI8.0e-5664.62Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00200 PE=4 SV=... [more]
W9QU25_9ROSA2.0e-5469.01CBS domain-containing protein CBSX1 OS=Morus notabilis GN=L484_007219 PE=4 SV=1[more]
A0A067GKB8_CITSI2.6e-5468.18Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025613mg PE=4 SV=1[more]
V4UIP4_9ROSI5.7e-5468.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026357mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G36910.19.7e-5356.60 Cystathionine beta-synthase (CBS) family protein[more]
AT4G34120.11.8e-4657.47 Cystathionine beta-synthase (CBS) family protein[more]
Match NameE-valueIdentityDescription
gi|449443418|ref|XP_004139474.1|1.0e-8380.00PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sati... [more]
gi|659071762|ref|XP_008461810.1|1.4e-8279.55PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis melo... [more]
gi|225438783|ref|XP_002283079.1|1.1e-5564.62PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Vitis vinifera][more]
gi|703088323|ref|XP_010093504.1|2.8e-5469.01CBS domain-containing protein CBSX1 [Morus notabilis][more]
gi|641860430|gb|KDO79119.1|3.7e-5468.18hypothetical protein CISIN_1g025613mg [Citrus sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045454 cell redox homeostasis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005623 cell
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G000990.1Lsi03G000990.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000644CBS domainPFAMPF00571CBScoord: 129..173
score: 3.7E-8coord: 356..409
score: 1.2
IPR000644CBS domainSMARTSM00116cbs_1coord: 363..411
score: 1.8E-11coord: 138..205
score:
IPR000644CBS domainPROFILEPS51371CBScoord: 360..417
score: 14.54coord: 133..212
score: 11
NoneNo IPR availableGENE3DG3DSA:3.10.580.10coord: 128..201
score: 3.4E-18coord: 336..417
score: 4.9E-18coord: 234..273
score: 3.4
NoneNo IPR availablePANTHERPTHR11911INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATEDcoord: 115..171
score: 1.4E-109coord: 191..249
score: 1.4E-109coord: 355..420
score: 1.4E
NoneNo IPR availablePANTHERPTHR11911:SF109SUBFAMILY NOT NAMEDcoord: 355..420
score: 1.4E-109coord: 191..249
score: 1.4E-109coord: 115..171
score: 1.4E
NoneNo IPR availableunknownSSF54631CBS-domain paircoord: 338..409
score: 1.57E-16coord: 125..273
score: 3.1