Lsi03G000970 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTAGCCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCATTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCAGGGACTGAGACAATGAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGTAATATATATTGAGTGTGTTTCTGTTTACTTTTCTTTTGCATTTTAAAATTGAAGACAGTTTTCTGCTACAAAATAGTCATTTGATTTTTCTGTCAAATTTTTCTTAGAGAAATATTGATATAATATTAAATTTAACTTGACCGGTTAGCTTGAGCTTTTCGGTTAATTAGGGATTTTACGTGATATCAGATTAAGTGGTCCATGAAGTATTGTGTTCAAACCCTTGCAATGTTTCATCTCTAATTAATATTGATTTCCACTTGTTGGGTCTTCTACATTCAAGCTCTCAGTGAGGGGAGTATTGATATAATATTAAATTTACCTTCACTCATTAACATAAGTTTTTGAGTCAATTGGTGATTTAACAAGAATAAATGGTAAAAAGCTGAGAAAAGGAGCAATATTCTGTCGCTTCAAGTGTTCTCTACCTACTGAATGATTAGCAAAAACCATTGAATGGCATAATTGAAGACGTTATTTTTATTCTTCTATATTCTTACATAATTATATTGAAACTACATGAAAACATAACATTTCAAATACTTTTCCAGCAGGCGCATGCACATGCACCCATACAAAAGAACAAAACAGAAGTGAATATACCAATTGTGAAACATATTCCTGAAAGTAGTTAATTTGTACAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGCACGCATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGCGAAGGCCTTTCCTTGCTGCAACAGACACTACCTCCTCAACAATAACTCTTCTGGCTTGCAATTTTAGTATTACAAAGTAGTATCGGCTTTTTTCTTTTTTTTTTTAACCCTTTAGATTCAACCACATGTAATTTAAGCTCTTAAGAGTCGAACTGCATAAGCTTAGTCTATTATGTGCACTGTCTTGGTTTCTGATTTTTTTGCTCCGTTTCCGGGTGATATTCTTTTAGGGGGCTTTAGTGTGAAATCTTAAGCTAAACTTTAGGATTAGCTGGGGTTTAGGTAGTCTGGATTTTAAAAAACTGTGGTTGATTTGCAGGTTTAAGAAGCCAGGGTGTAAGAAGTCAATGTTTGGAGTACAAGTTTAGAAAGATTGAGAATGAAGTGCAGATTTAGAAGTCTTCGGTTTGTGAAATATTTTATTGTATTAAATTAATGTTTAATTTTATATTAGTTTAAATTTGTCATGTTAGTAATTTATTTTGATTATTTT ATGCTAGCCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCATTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCAGGGACTGAGACAATGAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGCACGCATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGCGAAGGCCTTTCCTTGCTGCAACAGACACTACCTCCTCAACAATAACTCTTCTGGCTTGCAATTTTAGTATTACAAAGTAGTATCGGCTTTTTTCTTTTTTTTTTTAACCCTTTAGATTCAACCACATGTAATTTAAGCTCTTAAGAGTCGAACTGCATAAGCTTAGTCTATTATGTGCACTGTCTTGGTTTCTGATTTTTTTGCTCCGTTTCCGGGTGATATTCTTTTAGGGGGCTTTAGTGTGAAATCTTAAGCTAAACTTTAGGATTAGCTGGGGTTTAGGTAGTCTGGATTTTAAAAAACTGTGGTTGATTTGCAGGTTTAAGAAGCCAGGGTGTAAGAAGTCAATGTTTGGAGTACAAGTTTAGAAAGATTGAGAATGAAGTGCAGATTTAGAAGTCTTCGGTTTGTGAAATATTTTATTGTATTAAATTAATGTTTAATTTTATATTAGTTTAAATTTGTCATGTTAGTAATTTATTTTGATTATTTT ATGCTAGCCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCATTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCAGGGACTGAGACAATGAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGCACGCATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGCGAAGGCCTTTCCTTGCTGCAACAGACACTACCTCCTCAACAATAA MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKVLRGAHEWEQHNQGRTHRKRMYRLKKKCEGLSLLQQTLPPQQ
BLAST of Lsi03G000970 vs. Swiss-Prot
Match: IPT2_ARATH (tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2) HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23 Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1
BLAST of Lsi03G000970 vs. TrEMBL
Match: A0A0A0LVP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G152000 PE=3 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 3.5e-42 Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 1
BLAST of Lsi03G000970 vs. TrEMBL
Match: A0A087G214_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs50506U000100 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22 Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1
BLAST of Lsi03G000970 vs. TrEMBL
Match: D7LJ01_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_668494 PE=3 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 3.1e-22 Identity = 51/85 (60.00%), Postives = 70/85 (82.35%), Query Frame = 1
BLAST of Lsi03G000970 vs. TrEMBL
Match: R0FVT7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023142mg PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 9.0e-22 Identity = 49/85 (57.65%), Postives = 69/85 (81.18%), Query Frame = 1
BLAST of Lsi03G000970 vs. TrEMBL
Match: V4NWK5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016598mg PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21 Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1
BLAST of Lsi03G000970 vs. TAIR10
Match: AT2G27760.1 (AT2G27760.1 tRNAisopentenyltransferase 2) HSP 1 Score: 109.8 bits (273), Expect = 1.0e-24 Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1
BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|449443416|ref|XP_004139473.1| (PREDICTED: tRNA dimethylallyltransferase 2 [Cucumis sativus]) HSP 1 Score: 178.7 bits (452), Expect = 5.0e-42 Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 1
BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|659071765|ref|XP_008461831.1| (PREDICTED: tRNA dimethylallyltransferase 2 isoform X1 [Cucumis melo]) HSP 1 Score: 166.4 bits (420), Expect = 2.6e-38 Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 1
BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|727600406|ref|XP_010473169.1| (PREDICTED: tRNA dimethylallyltransferase 2-like [Camelina sativa]) HSP 1 Score: 115.9 bits (289), Expect = 4.0e-23 Identity = 51/85 (60.00%), Postives = 71/85 (83.53%), Query Frame = 1
BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|727484104|ref|XP_010417925.1| (PREDICTED: tRNA dimethylallyltransferase 2 [Camelina sativa]) HSP 1 Score: 115.9 bits (289), Expect = 4.0e-23 Identity = 51/85 (60.00%), Postives = 71/85 (83.53%), Query Frame = 1
BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|727457672|ref|XP_010510731.1| (PREDICTED: tRNA dimethylallyltransferase 2-like [Camelina sativa]) HSP 1 Score: 113.6 bits (283), Expect = 2.0e-22 Identity = 50/84 (59.52%), Postives = 69/84 (82.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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