Lsi03G000970 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G000970
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptiontRNA dimethylallyltransferase 2-like protein
Locationchr03 : 1383095 .. 1384494 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGCCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCATTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCAGGGACTGAGACAATGAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGTAATATATATTGAGTGTGTTTCTGTTTACTTTTCTTTTGCATTTTAAAATTGAAGACAGTTTTCTGCTACAAAATAGTCATTTGATTTTTCTGTCAAATTTTTCTTAGAGAAATATTGATATAATATTAAATTTAACTTGACCGGTTAGCTTGAGCTTTTCGGTTAATTAGGGATTTTACGTGATATCAGATTAAGTGGTCCATGAAGTATTGTGTTCAAACCCTTGCAATGTTTCATCTCTAATTAATATTGATTTCCACTTGTTGGGTCTTCTACATTCAAGCTCTCAGTGAGGGGAGTATTGATATAATATTAAATTTACCTTCACTCATTAACATAAGTTTTTGAGTCAATTGGTGATTTAACAAGAATAAATGGTAAAAAGCTGAGAAAAGGAGCAATATTCTGTCGCTTCAAGTGTTCTCTACCTACTGAATGATTAGCAAAAACCATTGAATGGCATAATTGAAGACGTTATTTTTATTCTTCTATATTCTTACATAATTATATTGAAACTACATGAAAACATAACATTTCAAATACTTTTCCAGCAGGCGCATGCACATGCACCCATACAAAAGAACAAAACAGAAGTGAATATACCAATTGTGAAACATATTCCTGAAAGTAGTTAATTTGTACAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGCACGCATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGCGAAGGCCTTTCCTTGCTGCAACAGACACTACCTCCTCAACAATAACTCTTCTGGCTTGCAATTTTAGTATTACAAAGTAGTATCGGCTTTTTTCTTTTTTTTTTTAACCCTTTAGATTCAACCACATGTAATTTAAGCTCTTAAGAGTCGAACTGCATAAGCTTAGTCTATTATGTGCACTGTCTTGGTTTCTGATTTTTTTGCTCCGTTTCCGGGTGATATTCTTTTAGGGGGCTTTAGTGTGAAATCTTAAGCTAAACTTTAGGATTAGCTGGGGTTTAGGTAGTCTGGATTTTAAAAAACTGTGGTTGATTTGCAGGTTTAAGAAGCCAGGGTGTAAGAAGTCAATGTTTGGAGTACAAGTTTAGAAAGATTGAGAATGAAGTGCAGATTTAGAAGTCTTCGGTTTGTGAAATATTTTATTGTATTAAATTAATGTTTAATTTTATATTAGTTTAAATTTGTCATGTTAGTAATTTATTTTGATTATTTT

mRNA sequence

ATGCTAGCCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCATTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCAGGGACTGAGACAATGAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGCACGCATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGCGAAGGCCTTTCCTTGCTGCAACAGACACTACCTCCTCAACAATAACTCTTCTGGCTTGCAATTTTAGTATTACAAAGTAGTATCGGCTTTTTTCTTTTTTTTTTTAACCCTTTAGATTCAACCACATGTAATTTAAGCTCTTAAGAGTCGAACTGCATAAGCTTAGTCTATTATGTGCACTGTCTTGGTTTCTGATTTTTTTGCTCCGTTTCCGGGTGATATTCTTTTAGGGGGCTTTAGTGTGAAATCTTAAGCTAAACTTTAGGATTAGCTGGGGTTTAGGTAGTCTGGATTTTAAAAAACTGTGGTTGATTTGCAGGTTTAAGAAGCCAGGGTGTAAGAAGTCAATGTTTGGAGTACAAGTTTAGAAAGATTGAGAATGAAGTGCAGATTTAGAAGTCTTCGGTTTGTGAAATATTTTATTGTATTAAATTAATGTTTAATTTTATATTAGTTTAAATTTGTCATGTTAGTAATTTATTTTGATTATTTT

Coding sequence (CDS)

ATGCTAGCCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCATTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCAGGGACTGAGACAATGAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGCACGCATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGCGAAGGCCTTTCCTTGCTGCAACAGACACTACCTCCTCAACAATAA

Protein sequence

MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKVLRGAHEWEQHNQGRTHRKRMYRLKKKCEGLSLLQQTLPPQQ
BLAST of Lsi03G000970 vs. Swiss-Prot
Match: IPT2_ARATH (tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQVV+PA +IIR FL+  + TE+    +SG++I++D+WTQY+C+ACGNK+
Sbjct: 369 ILSKSEESWNAQVVKPASEIIRCFLE--TETESGRDPTSGKSIERDLWTQYVCEACGNKI 428

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLK 85
           LRG HEWE H QGRTHRKR  R K
Sbjct: 429 LRGRHEWEHHKQGRTHRKRTTRHK 450

BLAST of Lsi03G000970 vs. TrEMBL
Match: A0A0A0LVP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G152000 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.5e-42
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 1

Query: 4   KVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKVLRG 63
           KVEDSWTA VVEPA QIIRSFL DGS TETM PHSS + IKKD+WTQYICQACGNKVLRG
Sbjct: 378 KVEDSWTAHVVEPAVQIIRSFLTDGSATETMKPHSS-ELIKKDLWTQYICQACGNKVLRG 437

Query: 64  AHEWEQHNQGRTHRKRMYRLKKKCEGLSLLQQTLPPQQ 102
           AHEWEQHNQGRTHRKRMYRL+KKCEGLSLL Q LPPQ+
Sbjct: 438 AHEWEQHNQGRTHRKRMYRLRKKCEGLSLLHQKLPPQE 474

BLAST of Lsi03G000970 vs. TrEMBL
Match: A0A087G214_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs50506U000100 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = 1

Query: 1  MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
          +L+K E+SW AQVV+PA +I+R FLK  + TE  +  +SG +IK+D+W+QY+C+ACGNKV
Sbjct: 7  LLSKSEESWDAQVVKPASEILRRFLK--TETELGHDLTSGNSIKRDLWSQYVCEACGNKV 66

Query: 61 LRGAHEWEQHNQGRTHRKRMYRLKK 86
          LRG HEW+QH QGRTHRKR  RL K
Sbjct: 67 LRGRHEWDQHRQGRTHRKRTTRLSK 89

BLAST of Lsi03G000970 vs. TrEMBL
Match: D7LJ01_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_668494 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-22
Identity = 51/85 (60.00%), Postives = 70/85 (82.35%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQVV+PA +I++ FL   + T+T +  +SG++I++D+W+QY+C+ACGNKV
Sbjct: 371 ILSKSEESWDAQVVKPASEILKRFLM--TETDTGHDLTSGKSIERDLWSQYVCEACGNKV 430

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLKK 86
           LRG HEWEQH QGRTHRKR  RLKK
Sbjct: 431 LRGKHEWEQHKQGRTHRKRASRLKK 453

BLAST of Lsi03G000970 vs. TrEMBL
Match: R0FVT7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023142mg PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.0e-22
Identity = 49/85 (57.65%), Postives = 69/85 (81.18%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQV++PA +I+R FL     T+T +  +SG+++++D+W+QY+C+ACGNKV
Sbjct: 369 ILSKSEESWDAQVIKPAAEILRCFLM--KETDTGSDITSGKSLERDLWSQYVCEACGNKV 428

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLKK 86
           LRG HEWEQH QGRTHRKR  RL+K
Sbjct: 429 LRGRHEWEQHKQGRTHRKRTTRLRK 451

BLAST of Lsi03G000970 vs. TrEMBL
Match: V4NWK5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016598mg PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQVV+PA +I+R FLK    TET   H S ++I++D+W+QY+C+ACGNKV
Sbjct: 368 LLSKSEESWDAQVVKPASEILRCFLK----TETELGHDS-KSIERDLWSQYVCEACGNKV 427

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLKK 86
           LRG HEWEQH QGR HRKR  RLKK
Sbjct: 428 LRGRHEWEQHRQGRAHRKRTTRLKK 447

BLAST of Lsi03G000970 vs. TAIR10
Match: AT2G27760.1 (AT2G27760.1 tRNAisopentenyltransferase 2)

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-24
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQVV+PA +IIR FL+  + TE+    +SG++I++D+WTQY+C+ACGNK+
Sbjct: 369 ILSKSEESWNAQVVKPASEIIRCFLE--TETESGRDPTSGKSIERDLWTQYVCEACGNKI 428

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLK 85
           LRG HEWE H QGRTHRKR  R K
Sbjct: 429 LRGRHEWEHHKQGRTHRKRTTRHK 450

BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|449443416|ref|XP_004139473.1| (PREDICTED: tRNA dimethylallyltransferase 2 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 5.0e-42
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 1

Query: 4   KVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKVLRG 63
           KVEDSWTA VVEPA QIIRSFL DGS TETM PHSS + IKKD+WTQYICQACGNKVLRG
Sbjct: 378 KVEDSWTAHVVEPAVQIIRSFLTDGSATETMKPHSS-ELIKKDLWTQYICQACGNKVLRG 437

Query: 64  AHEWEQHNQGRTHRKRMYRLKKKCEGLSLLQQTLPPQQ 102
           AHEWEQHNQGRTHRKRMYRL+KKCEGLSLL Q LPPQ+
Sbjct: 438 AHEWEQHNQGRTHRKRMYRLRKKCEGLSLLHQKLPPQE 474

BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|659071765|ref|XP_008461831.1| (PREDICTED: tRNA dimethylallyltransferase 2 isoform X1 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-38
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 1

Query: 4   KVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKVLRG 63
           KVEDSWT  VVEPA QIIRSFL DG  T+TM PHSS   + KD+WTQYICQACG+KVLRG
Sbjct: 378 KVEDSWTRHVVEPAVQIIRSFLADGLVTQTMKPHSS--KLIKDLWTQYICQACGSKVLRG 437

Query: 64  AHEWEQHNQGRTHRKRMYRLKKKCEGLSLLQQTLPPQQ 102
           AHEWEQHNQGRTHRKRMYRLKKKCEGLSLL Q LPPQ+
Sbjct: 438 AHEWEQHNQGRTHRKRMYRLKKKCEGLSLLHQRLPPQE 473

BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|727600406|ref|XP_010473169.1| (PREDICTED: tRNA dimethylallyltransferase 2-like [Camelina sativa])

HSP 1 Score: 115.9 bits (289), Expect = 4.0e-23
Identity = 51/85 (60.00%), Postives = 71/85 (83.53%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQV++PA +I+RSFL   +GT+T    +SG+++++D+W+QY+C+ACGNKV
Sbjct: 366 ILSKSEESWDAQVIKPASEILRSFLM--TGTDTGRDLTSGKSLERDLWSQYVCEACGNKV 425

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLKK 86
           LRG HEWEQH QGRTHRKR  RL+K
Sbjct: 426 LRGRHEWEQHQQGRTHRKRTTRLRK 448

BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|727484104|ref|XP_010417925.1| (PREDICTED: tRNA dimethylallyltransferase 2 [Camelina sativa])

HSP 1 Score: 115.9 bits (289), Expect = 4.0e-23
Identity = 51/85 (60.00%), Postives = 71/85 (83.53%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQV++PA +I+RSFL   +GT+T    +SG+++++D+W+QY+C+ACGNKV
Sbjct: 365 ILSKSEESWDAQVIKPASEILRSFLM--TGTDTGRDLTSGKSLERDLWSQYVCEACGNKV 424

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLKK 86
           LRG HEWEQH QGRTHRKR  RL+K
Sbjct: 425 LRGRHEWEQHQQGRTHRKRTTRLRK 447

BLAST of Lsi03G000970 vs. NCBI nr
Match: gi|727457672|ref|XP_010510731.1| (PREDICTED: tRNA dimethylallyltransferase 2-like [Camelina sativa])

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-22
Identity = 50/84 (59.52%), Postives = 69/84 (82.14%), Query Frame = 1

Query: 1   MLAKVEDSWTAQVVEPAFQIIRSFLKDGSGTETMNPHSSGQTIKKDVWTQYICQACGNKV 60
           +L+K E+SW AQV++PA +IIR FL   +GT+T    +SG+++++D+W+QY+C+ACGNKV
Sbjct: 369 ILSKAEESWDAQVIKPASEIIRCFLM--TGTDTGRDLTSGKSLERDLWSQYVCEACGNKV 428

Query: 61  LRGAHEWEQHNQGRTHRKRMYRLK 85
           LRG HEWEQH QGRTHRKR  RL+
Sbjct: 429 LRGRHEWEQHQQGRTHRKRTTRLR 450

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IPT2_ARATH1.8e-2359.52tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0LVP2_CUCSA3.5e-4286.73Uncharacterized protein OS=Cucumis sativus GN=Csa_1G152000 PE=3 SV=1[more]
A0A087G214_ARAAL1.8e-2261.18Uncharacterized protein OS=Arabis alpina GN=AALP_AAs50506U000100 PE=4 SV=1[more]
D7LJ01_ARALL3.1e-2260.00Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_668494 PE=3 ... [more]
R0FVT7_9BRAS9.0e-2257.65Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023142mg PE=3 SV=1[more]
V4NWK5_EUTSA1.2e-2162.35Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016598mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G27760.11.0e-2459.52 tRNAisopentenyltransferase 2[more]
Match NameE-valueIdentityDescription
gi|449443416|ref|XP_004139473.1|5.0e-4286.73PREDICTED: tRNA dimethylallyltransferase 2 [Cucumis sativus][more]
gi|659071765|ref|XP_008461831.1|2.6e-3881.63PREDICTED: tRNA dimethylallyltransferase 2 isoform X1 [Cucumis melo][more]
gi|727600406|ref|XP_010473169.1|4.0e-2360.00PREDICTED: tRNA dimethylallyltransferase 2-like [Camelina sativa][more]
gi|727484104|ref|XP_010417925.1|4.0e-2360.00PREDICTED: tRNA dimethylallyltransferase 2 [Camelina sativa][more]
gi|727457672|ref|XP_010510731.1|2.0e-2259.52PREDICTED: tRNA dimethylallyltransferase 2-like [Camelina sativa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009691 cytokinin biosynthetic process
biological_process GO:0006400 tRNA modification
biological_process GO:0008033 tRNA processing
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0009824 AMP dimethylallyltransferase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0052381 tRNA dimethylallyltransferase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G000970.1Lsi03G000970.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11088TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATEDcoord: 1..86
score: 2.6
NoneNo IPR availablePANTHERPTHR11088:SF26TRNA DIMETHYLALLYLTRANSFERASE 2coord: 1..86
score: 2.6
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 38..84
score: 5.3