Lsi03G000640 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G000640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
Location	chr03 : 916868 .. 917729 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATGTTAGCTCCTTATCCACATTTCCCAACACATTGAAAAACACAACCCCAAATCTTGACCTACAAGTAAACACAAAACCCCAAAATTCTAAATGGTGAGCATATTCCTCTACCCTTCATCAAGTAAACCAAAACACACACACACAAATTAAACACACTTCTTATACTCATCAATAAAAACCCTTCACTTAAACATAAAATAACAAAAGTAAAAAAATTGGTAAGTTAAAAAAAGAAGAAGAATGAGAAGCACTAGTATACAAGGAGAAGCATCATCATCATCATCAAAGCAAAGCTCCAATGTTCAACAACATGGGACAGCAAAGCGCACAAGGTTATTAAGAATCACAGGAAGAAGCTTATTGGGTGTAATGATCCTTGTAGGTCTTGCAATTATTATATGTTGGCTTATTGTTTTCCCCAAAACCCCAAATCTCTTTGTTGAATATGGCCAAGTTATACCTCAAAGTTTAACTGATAGAAAGCTCAAAGCTACCATAGCTTTCACTGTCAAAACCTATAACCCTAACAAAAGAGCCTCCATTCATATGGATTCTTTGACGATGATAGTCACCGATATGGGGCAAACGTTTTTGTCAGTCATTCCCAACTTCATCCAGCCGCCTGGAAACCAGACCGTCTTGACCTTGGCCGTCCAAGGCAACTTCATATACCCGTTTGGGCATATGAAGGAATTGATGTTGAAGGAGGGAATCCATCCCGAGCTTCGCTTCTCGGCGAAAATCAGGTACGAACATTTGACTTTTAAGACAAATATATATAACGTATATGAATGTCGTTTGGTTTTGTTGATGCAAAAATCTTTATTTCTTTTATTTTTTTTTAGGTTAAAATTATAG

mRNA sequence

TTGATGTTAGCTCCTTATCCACATTTCCCAACACATTGAAAAACACAACCCCAAATCTTGACCTACAAGTAAACACAAAACCCCAAAATTCTAAATGGTGAGCATATTCCTCTACCCTTCATCAAGTAAACCAAAACACACACACACAAATTAAACACACTTCTTATACTCATCAATAAAAACCCTTCACTTAAACATAAAATAACAAAAGTAAAAAAATTGGTAAGTTAAAAAAAGAAGAAGAATGAGAAGCACTAGTATACAAGGAGAAGCATCATCATCATCATCAAAGCAAAGCTCCAATGTTCAACAACATGGGACAGCAAAGCGCACAAGGTTATTAAGAATCACAGGAAGAAGCTTATTGGGTGTAATGATCCTTGTAGGTCTTGCAATTATTATATGTTGGCTTATTGTTTTCCCCAAAACCCCAAATCTCTTTGTTGAATATGGCCAAGTTATACCTCAAAGTTTAACTGATAGAAAGCTCAAAGCTACCATAGCTTTCACTGTCAAAACCTATAACCCTAACAAAAGAGCCTCCATTCATATGGATTCTTTGACGATGATAGTCACCGATATGGGGCAAACGTTTTTGTCAGTCATTCCCAACTTCATCCAGCCGCCTGGAAACCAGACCGTCTTGACCTTGGCCGTCCAAGGCAACTTCATATACCCGTTTGGGCATATGAAGGAATTGATGTTGAAGGAGGGAATCCATCCCGAGCTTCGCTTCTCGGCGAAAATCAGGTTAAAATTATAG

Coding sequence (CDS)

ATGAGAAGCACTAGTATACAAGGAGAAGCATCATCATCATCATCAAAGCAAAGCTCCAATGTTCAACAACATGGGACAGCAAAGCGCACAAGGTTATTAAGAATCACAGGAAGAAGCTTATTGGGTGTAATGATCCTTGTAGGTCTTGCAATTATTATATGTTGGCTTATTGTTTTCCCCAAAACCCCAAATCTCTTTGTTGAATATGGCCAAGTTATACCTCAAAGTTTAACTGATAGAAAGCTCAAAGCTACCATAGCTTTCACTGTCAAAACCTATAACCCTAACAAAAGAGCCTCCATTCATATGGATTCTTTGACGATGATAGTCACCGATATGGGGCAAACGTTTTTGTCAGTCATTCCCAACTTCATCCAGCCGCCTGGAAACCAGACCGTCTTGACCTTGGCCGTCCAAGGCAACTTCATATACCCGTTTGGGCATATGAAGGAATTGATGTTGAAGGAGGGAATCCATCCCGAGCTTCGCTTCTCGGCGAAAATCAGGTTAAAATTATAG

Protein sequence

MRSTSIQGEASSSSSKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSVIPNFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKIRLKL

Homology

[Close]

BLAST of Lsi03G000640 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.5e-06
Identity = 44/157 (28.03%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 24  HGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPNLFVEYGQV--IPQSLTDRK 83
           HG      LL +  + ++ +++++G+A +I WLIV P+     V    +     +  D  
Sbjct: 29  HGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNI 88

Query: 84  LKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSV-IPNFIQPPGNQTVLTLAVQG 143
           L+  +A TV   NPNKR  ++ D +       G+ F ++ +  F Q   N TVLT   QG
Sbjct: 89  LRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQG 148

Query: 144 N--FIYPFGHMKELMLK--EGIHP-ELRFSAKIRLKL 173
               I+  G  + L  +   G++  E++F  ++R KL
Sbjct: 149 QNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKL 185

[Close]

BLAST of Lsi03G000640 vs. TrEMBL
Match: A0A0A0LSV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 5.0e-57
Identity = 122/172 (70.93%), Postives = 141/172 (81.98%), Query Frame = 1


Query: 1   MRSTSIQGEA----SSSSSKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWL 60
           MRS    GE     SSSSSK+ S V +HGTAKRTR+LRITGR+LLG+MILV +A+IICWL
Sbjct: 1   MRSNGKAGEPPPPPSSSSSKEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWL 60

Query: 61  IVFPKTPNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQT 120
           IVFP+ P++ VE GQVIP SLTDRKL ATIAFTV +YNPNK+ASI MDS+ MIV+DMG +
Sbjct: 61  IVFPRNPDIIVETGQVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLS 120

Query: 121 FLSVIPNFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
           F S IP+F QPP N+TVLT  +QGNFIYPFGHMKELM  EGI PELRFSAK+
Sbjct: 121 FWSDIPSFTQPPKNKTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKV 172

[Close]

BLAST of Lsi03G000640 vs. TrEMBL
Match: A0A0A0LVK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 100/166 (60.24%), Postives = 124/166 (74.70%), Query Frame = 1


Query: 3   STSIQGEASSSSSKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKT 62
           ST+ +GEASSS   + S+  Q+ T K+TR++RI GRSLL V+ LVGLA++ICWL+VFPK 
Sbjct: 4   STTAKGEASSS---KKSSKGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKN 63

Query: 63  PNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSVIP 122
           P +FVE G+VI  + T   L ATI FTVK YNPNKRAS+H+ S+ MIVT MGQ F SVIP
Sbjct: 64  PRIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIP 123

Query: 123 NFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
            F+Q PGNQTVL+ AV+ NF YPFGH +E      I+PEL FSA+I
Sbjct: 124 TFMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEI 160

[Close]

BLAST of Lsi03G000640 vs. TrEMBL
Match: A0A0A0LY09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-38
Identity = 89/153 (58.17%), Postives = 110/153 (71.90%), Query Frame = 1


Query: 16  KQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPNLFVEYGQVIPQ 75
           + ++    HG  KRTRL+R+ GRSLLGV+ LV L +IICWL+V PK+P L VE G+VI  
Sbjct: 2   RSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAH 61

Query: 76  SLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSVIPNFIQPPGNQTVLT 135
           S T   L ATIAFTVK+YNPNKRASIHMD + MIV +MG  F S IP+F   P NQTVL+
Sbjct: 62  SSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLS 121

Query: 136 LAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
            AVQ NF YPFG+ +E      I+PEL+FSA++
Sbjct: 122 SAVQVNFEYPFGYTEE------INPELQFSAEV 148

[Close]

BLAST of Lsi03G000640 vs. TrEMBL
Match: A0A0A0LSU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-34
Identity = 89/172 (51.74%), Postives = 116/172 (67.44%), Query Frame = 1


Query: 1   MRSTSIQGEASSSS---SKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLI 60
           MRST+ QGE +SSS   + + S  +Q  T KRTR++RI GRSLL V+I + +AII CWL+
Sbjct: 1   MRSTTTQGEGASSSIIEAPKRSFCRQRETTKRTRIIRIIGRSLLSVIIFLSVAIITCWLV 60

Query: 61  VFPKTPNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTD-MGQT 120
           VFP+TP L VE  +V     T+R L ATI F +K+YNPNK+ASIHMDS+ MIV+D MG  
Sbjct: 61  VFPRTPRLMVETSKVTAHGSTNRHLNATIVFYIKSYNPNKKASIHMDSVKMIVSDYMGLP 120

Query: 121 FLSVIPNFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
           F S IP F   P N+ V    V+ NF+YPFG     +  + +H ELRFSA++
Sbjct: 121 FHSTIPTFTLMPRNEMVFNSTVRVNFMYPFGRP---VHSDWVHLELRFSAQV 169

[Close]

BLAST of Lsi03G000640 vs. TrEMBL
Match: A0A0A0LV68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-32
Identity = 90/171 (52.63%), Postives = 113/171 (66.08%), Query Frame = 1


Query: 3   STSIQGEASSSS---SKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVF 62
           +T+ QGEASSSS   + +    +QHG AKRTR++RI GRSLL  ++L+G+AI+ CW +V 
Sbjct: 8   TTTTQGEASSSSIIRAPKRGAYRQHGIAKRTRVIRIIGRSLLCAIMLLGIAILTCWFVVI 67

Query: 63  PKTPNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTD-MGQTFL 122
           P+TP L VE GQV     T RKL ATI F +++YNPNKRASI++DS+ M V + M   F 
Sbjct: 68  PRTPQLMVESGQVTGYHSTIRKLNATIVFNIRSYNPNKRASIYVDSMKMTVKNYMSVPFH 127

Query: 123 SVIPNFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEG-IHPELRFSAKI 169
           S IPNF   P N TVLT  +  N IYPFG      L  G IH EL FSAK+
Sbjct: 128 SDIPNFTMTPRNMTVLTPTILVNCIYPFGR----PLHAGWIHIELSFSAKV 174

[Close]

BLAST of Lsi03G000640 vs. TAIR10
Match: AT2G35980.1 (AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-07
Identity = 44/157 (28.03%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 24  HGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPNLFVEYGQV--IPQSLTDRK 83
           HG      LL +  + ++ +++++G+A +I WLIV P+     V    +     +  D  
Sbjct: 29  HGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNI 88

Query: 84  LKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSV-IPNFIQPPGNQTVLTLAVQG 143
           L+  +A TV   NPNKR  ++ D +       G+ F ++ +  F Q   N TVLT   QG
Sbjct: 89  LRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTFQG 148

Query: 144 N--FIYPFGHMKELMLK--EGIHP-ELRFSAKIRLKL 173
               I+  G  + L  +   G++  E++F  ++R KL
Sbjct: 149 QNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKL 185

[Close]

BLAST of Lsi03G000640 vs. NCBI nr
Match: gi|659071871|ref|XP_008462326.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 6.5e-58
Identity = 119/168 (70.83%), Postives = 142/168 (84.52%), Query Frame = 1


Query: 1   MRSTSIQGEASSSSSKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFP 60
           MRS + QGE SSSS+K+ S V++HG AKRTR+LRITGR+LLG+MILV +A+IICWLIVFP
Sbjct: 1   MRSIATQGEPSSSSAKEISYVEKHGAAKRTRVLRITGRTLLGLMILVAIAMIICWLIVFP 60

Query: 61  KTPNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSV 120
           + P+L VE G+VIP SLTDRKL ATIAFTV +YNPNK+ASI MDS+ MIVTDMG +F S 
Sbjct: 61  RNPDLIVETGKVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVTDMGLSFWSD 120

Query: 121 IPNFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
           IP+F QPP N+TVL   +QGNFIYPFGHMKEL+  EGI P+LRFSAK+
Sbjct: 121 IPSFTQPPKNKTVLNSTIQGNFIYPFGHMKELVKLEGISPDLRFSAKV 168

[Close]

BLAST of Lsi03G000640 vs. NCBI nr
Match: gi|449443378|ref|XP_004139454.1| (PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 7.2e-57
Identity = 122/172 (70.93%), Postives = 141/172 (81.98%), Query Frame = 1


Query: 1   MRSTSIQGEA----SSSSSKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWL 60
           MRS    GE     SSSSSK+ S V +HGTAKRTR+LRITGR+LLG+MILV +A+IICWL
Sbjct: 1   MRSNGKAGEPPPPPSSSSSKEMSYVIKHGTAKRTRVLRITGRTLLGLMILVAIAMIICWL 60

Query: 61  IVFPKTPNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQT 120
           IVFP+ P++ VE GQVIP SLTDRKL ATIAFTV +YNPNK+ASI MDS+ MIV+DMG +
Sbjct: 61  IVFPRNPDIIVETGQVIPHSLTDRKLNATIAFTVTSYNPNKKASIRMDSMRMIVSDMGLS 120

Query: 121 FLSVIPNFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
           F S IP+F QPP N+TVLT  +QGNFIYPFGHMKELM  EGI PELRFSAK+
Sbjct: 121 FWSDIPSFTQPPKNKTVLTSTIQGNFIYPFGHMKELMKLEGISPELRFSAKV 172

[Close]

BLAST of Lsi03G000640 vs. NCBI nr
Match: gi|778664980|ref|XP_011648454.1| (PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 100/166 (60.24%), Postives = 124/166 (74.70%), Query Frame = 1


Query: 3   STSIQGEASSSSSKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKT 62
           ST+ +GEASSS   + S+  Q+ T K+TR++RI GRSLL V+ LVGLA++ICWL+VFPK 
Sbjct: 4   STTAKGEASSS---KKSSKGQNETTKKTRIIRIIGRSLLSVIFLVGLAMVICWLVVFPKN 63

Query: 63  PNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSVIP 122
           P +FVE G+VI  + T   L ATI FTVK YNPNKRAS+H+ S+ MIVT MGQ F SVIP
Sbjct: 64  PRIFVETGRVIAHNSTHNMLNATIVFTVKCYNPNKRASVHLHSMRMIVTSMGQAFSSVIP 123

Query: 123 NFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
            F+Q PGNQTVL+ AV+ NF YPFGH +E      I+PEL FSA+I
Sbjct: 124 TFMQTPGNQTVLSPAVEVNFDYPFGHQEE------INPELHFSAEI 160

[Close]

BLAST of Lsi03G000640 vs. NCBI nr
Match: gi|659071873|ref|XP_008462337.1| (PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 9.5e-41
Identity = 99/169 (58.58%), Postives = 122/169 (72.19%), Query Frame = 1


Query: 1   MRS-TSIQGEASSSSSKQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVF 60
           MRS T+ +GEASSS   + S+  Q+ T K+TR++RI GR LL V+ LVGLA++ICWL+VF
Sbjct: 1   MRSITTTKGEASSS---RKSSKGQNETTKKTRIIRIIGRCLLSVIFLVGLAMVICWLVVF 60

Query: 61  PKTPNLFVEYGQVIPQSLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLS 120
           PK P   VE G+VI  + T   L ATIAFTVK YNPNKRASIH+ S+ MI+T MGQ F S
Sbjct: 61  PKNPRFVVETGKVIAHNSTHNMLNATIAFTVKCYNPNKRASIHLHSMRMIITSMGQAFSS 120

Query: 121 VIPNFIQPPGNQTVLTLAVQGNFIYPFGHMKELMLKEGIHPELRFSAKI 169
            +P F+Q PGNQTVL+ AV  NF YPFGH      +E I+PEL FSA+I
Sbjct: 121 AMPMFMQTPGNQTVLSPAVDVNFDYPFGH------REEINPELHFSAEI 160

[Close]

BLAST of Lsi03G000640 vs. NCBI nr
Match: gi|778659283|ref|XP_011654126.1| (PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 90/155 (58.06%), Postives = 112/155 (72.26%), Query Frame = 1


Query: 16  KQSSNVQQHGTAKRTRLLRITGRSLLGVMILVGLAIIICWLIVFPKTPNLFVEYGQVIPQ 75
           + ++    HG  KRTRL+R+ GRSLLGV+ LV L +IICWL+V PK+P L VE G+VI  
Sbjct: 2   RSTTTTTTHGITKRTRLIRVLGRSLLGVIFLVALGMIICWLVVIPKSPRLIVETGKVIAH 61

Query: 76  SLTDRKLKATIAFTVKTYNPNKRASIHMDSLTMIVTDMGQTFLSVIPNFIQPPGNQTVLT 135
           S T   L ATIAFTVK+YNPNKRASIHMD + MIV +MG  F S IP+F   P NQTVL+
Sbjct: 62  SSTISMLNATIAFTVKSYNPNKRASIHMDYMRMIVDNMGVRFSSAIPSFTLTPRNQTVLS 121

Query: 136 LAVQGNFIYPFGHMKELMLKEGIHPELRFSAKIRL 171
            AVQ NF YPFG+ +E      I+PEL+FSA++R+
Sbjct: 122 SAVQVNFEYPFGYTEE------INPELQFSAEVRV 150

The following BLAST results are available for this feature:

BLAST of Lsi03G000640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YLS9_ARATH	4.5e-06	28.03	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]

BLAST of Lsi03G000640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSV0_CUCSA	5.0e-57	70.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G134270 PE=4 SV=1	[more]
A0A0A0LVK9_CUCSA	1.1e-43	60.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132770 PE=4 SV=1	[more]
A0A0A0LY09_CUCSA	1.8e-38	58.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132760 PE=4 SV=1	[more]
A0A0A0LSU5_CUCSA	2.1e-34	51.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132730 PE=4 SV=1	[more]
A0A0A0LV68_CUCSA	2.5e-32	52.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132740 PE=4 SV=1	[more]

BLAST of Lsi03G000640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35980.1	2.5e-07	28.03	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Lsi03G000640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071871\|ref\|XP_008462326.1\|	6.5e-58	70.83	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|449443378\|ref\|XP_004139454.1\|	7.2e-57	70.93	PREDICTED: uncharacterized protein LOC101218532 [Cucumis sativus]	[more]
gi\|778664980\|ref\|XP_011648454.1\|	1.6e-43	60.24	PREDICTED: uncharacterized protein LOC105434469 [Cucumis sativus]	[more]
gi\|659071873\|ref\|XP_008462337.1\|	9.5e-41	58.58	PREDICTED: uncharacterized protein At1g08160-like [Cucumis melo]	[more]
gi\|778659283\|ref\|XP_011654126.1\|	6.8e-39	58.06	PREDICTED: protein YLS9-like isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G000640.1	Lsi03G000640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 89..171 score: 1.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 28..171 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G000640	Silver-seed gourd	carlsiB149
Lsi03G000640	Cucumber (Chinese Long) v3	cuclsiB048
Lsi03G000640	Watermelon (97103) v2	lsiwmbB216
Lsi03G000640	Wax gourd	lsiwgoB337
Lsi03G000640	Cucumber (Gy14) v1	cgylsiB343
Lsi03G000640	Cucurbita maxima (Rimu)	cmalsiB168
Lsi03G000640	Cucurbita maxima (Rimu)	cmalsiB212
Lsi03G000640	Cucurbita moschata (Rifu)	cmolsiB158
Lsi03G000640	Cucurbita moschata (Rifu)	cmolsiB203
Lsi03G000640	Cucurbita pepo (Zucchini)	cpelsiB429
Lsi03G000640	Cucurbita pepo (Zucchini)	cpelsiB669
Lsi03G000640	Wild cucumber (PI 183967)	cpilsiB046
Lsi03G000640	Cucumber (Chinese Long) v2	culsiB044
Lsi03G000640	Melon (DHL92) v3.5.1	lsimeB244
Lsi03G000640	Watermelon (Charleston Gray)	lsiwcgB230
Lsi03G000640	Watermelon (97103) v1	lsiwmB262
Lsi03G000640	Watermelon (97103) v1	lsiwmB263
Lsi03G000640	Cucumber (Gy14) v2	cgyblsiB041
Lsi03G000640	Melon (DHL92) v3.6.1	lsimedB255