Lsi03G000560 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G000560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Histone H2B
Location	chr03 : 862490 .. 862918 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCCGAGAAGAAGCCAGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCATCTGATAAGAAAAAGAAGAGAGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATTTTCAAGGTGCTCAAGCAAGTCCATCCCGACATTGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCAACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCCAAGCACGCCGTTTCCGAGGGTACCAAGGCTGTCACCAAGTTCACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAGCCAGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCATCTGATAAGAAAAAGAAGAGAGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATTTTCAAGGTGCTCAAGCAAGTCCATCCCGACATTGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCAACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCCAAGCACGCCGTTTCCGAGGGTACCAAGGCTGTCACCAAGTTCACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAGCCAGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCATCTGATAAGAAAAAGAAGAGAGCCAAGAAGAGCGTCGAGACTTACAAGATCTACATTTTCAAGGTGCTCAAGCAAGTCCATCCCGACATTGGAATCTCCAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCCAAGCTCGCTCGCTACAACAAGAAGCCAACCATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGTTGGCCAAGCACGCCGTTTCCGAGGGTACCAAGGCTGTCACCAAGTTCACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

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BLAST of Lsi03G000560 vs. Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-58
Identity = 131/145 (90.34%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSVETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lsi03G000560 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 224.6 bits (571), Expect = 7.1e-58
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK-AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSVETY 60
           MAPKAEKKPAEKKPA E+K  AEKAPAEKKP+A KKLPK+    A DKKKKR KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 143
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Lsi03G000560 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK--AEKAPAEKKPRAEKKLPKD----ASDKKKKRAKKSVET 60
           MAPK EKKPAEKKPA E+K   AEKAPAEKKP+A KKLPK+    A +KKKKR+KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Lsi03G000560 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSV 60
           MAPKAEKKPAEKKPA+E+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi03G000560 vs. Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 132/148 (89.19%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLP-KDASDKKKKRAKKSVET 60
           MAP+AEKKPAEKK AAE      K AEKAPAEKKP+A KKLP K+A DKKKKR+KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Lsi03G000560 vs. TrEMBL
Match: A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.8e-64
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560 vs. TrEMBL
Match: A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.3e-63
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DKKKKR+KKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lsi03G000560 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.3e-60
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+KAPAEKKPRAEKKLPK+A DKKKKR+KKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lsi03G000560 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.3e-60
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DK+KKR+KKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lsi03G000560 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 226.1 bits (575), Expect = 1.4e-59
Identity = 131/145 (90.34%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSVETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Lsi03G000560 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 223.0 bits (567), Expect = 1.2e-58
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSV 60
           MAPKAEKKPAEKKPA+E+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi03G000560 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 223.0 bits (567), Expect = 1.2e-58
Identity = 132/148 (89.19%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLP-KDASDKKKKRAKKSVET 60
           MAP+AEKKPAEKK AAE      K AEKAPAEKKP+A KKLP K+A DKKKKR+KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Lsi03G000560 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-58
Identity = 132/150 (88.00%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKRAKKSV 60
           MAP+AEKKPAEKKPAAE+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lsi03G000560 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-57
Identity = 131/151 (86.75%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MAPKA-----EKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS----DKKKKRAKKS 60
           MAPKA     EKKPAEK PA EEK AEKAPAEKKP+A KKLPK+A     +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Lsi03G000560 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560 vs. NCBI nr
Match: gi|449443375|ref|XP_004139453.1| (PREDICTED: histone H2B.7-like [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKKRAKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Lsi03G000560 vs. NCBI nr
Match: gi|823172029|ref|XP_012484994.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 239.6 bits (610), Expect = 3.4e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DKKKKR+KKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lsi03G000560 vs. NCBI nr
Match: gi|823172056|ref|XP_012485001.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 238.4 bits (607), Expect = 7.5e-60
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+KAPAEKKPRAEKKLPK+A DKKKKR+KKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Lsi03G000560 vs. NCBI nr
Match: gi|823172032|ref|XP_012484995.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 238.4 bits (607), Expect = 7.5e-60
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DK+KKR+KKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

The following BLAST results are available for this feature:

BLAST of Lsi03G000560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B7_ARATH	2.4e-58	90.34	Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3	[more]
H2B_GOSHI	7.1e-58	89.80	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B1_MEDTR	2.1e-57	88.51	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B11_ARATH	2.1e-57	88.00	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]
H2B1_ARATH	2.1e-57	89.19	Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3	[more]

BLAST of Lsi03G000560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV55_CUCSA	7.8e-64	99.30	Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1	[more]
A0A0A0LST8_CUCSA	2.3e-63	98.59	Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1	[more]
A0A0D2SV51_GOSRA	2.4e-60	95.77	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	5.3e-60	95.07	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	5.3e-60	95.07	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]

BLAST of Lsi03G000560 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46030.1	1.4e-59	90.34	Histone superfamily protein	[more]
AT5G59910.1	1.2e-58	88.00	Histone superfamily protein	[more]
AT1G07790.1	1.2e-58	89.19	Histone superfamily protein	[more]
AT3G45980.1	2.0e-58	88.00	Histone superfamily protein	[more]
AT2G28720.1	1.7e-57	86.75	Histone superfamily protein	[more]

BLAST of Lsi03G000560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659255\|ref\|XP_011654070.1\|	1.1e-63	99.30	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|449443375\|ref\|XP_004139453.1\|	3.3e-63	98.59	PREDICTED: histone H2B.7-like [Cucumis sativus]	[more]
gi\|823172029\|ref\|XP_012484994.1\|	3.4e-60	95.77	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172056\|ref\|XP_012485001.1\|	7.5e-60	95.07	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172032\|ref\|XP_012484995.1\|	7.5e-60	95.07	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000788	nuclear nucleosome
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G000560.1	Lsi03G000560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 126..139 score: 5.3E-49coord: 74..94 score: 5.3E-49coord: 96..113 score: 5.3E-49coord: 113..126 score: 5.3E-49coord: 55..73 score: 5.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 13..142 score: 5.9E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 45..141 score: 4.3
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 110..132 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..118 score: 4.8
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 23..142 score: 1.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 27..142 score: 1.34

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G000560	Cucumber (Gy14) v1	cgylsiB343
Lsi03G000560	Cucurbita maxima (Rimu)	cmalsiB168
Lsi03G000560	Cucurbita maxima (Rimu)	cmalsiB212
Lsi03G000560	Cucurbita moschata (Rifu)	cmolsiB158
Lsi03G000560	Cucurbita moschata (Rifu)	cmolsiB203
Lsi03G000560	Cucurbita pepo (Zucchini)	cpelsiB429
Lsi03G000560	Cucurbita pepo (Zucchini)	cpelsiB669
Lsi03G000560	Wild cucumber (PI 183967)	cpilsiB046
Lsi03G000560	Cucumber (Chinese Long) v2	culsiB044
Lsi03G000560	Melon (DHL92) v3.5.1	lsimeB244
Lsi03G000560	Watermelon (Charleston Gray)	lsiwcgB230
Lsi03G000560	Watermelon (97103) v1	lsiwmB263
Lsi03G000560	Cucumber (Gy14) v2	cgyblsiB041
Lsi03G000560	Melon (DHL92) v3.6.1	lsimedB255
Lsi03G000560	Silver-seed gourd	carlsiB149
Lsi03G000560	Cucumber (Chinese Long) v3	cuclsiB048
Lsi03G000560	Watermelon (97103) v2	lsiwmbB216
Lsi03G000560	Wax gourd	lsiwgoB337