Lsi02G027700 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTCCACCGTAGAAGAGGAAGGGAGATCAAAACAAAGGCTTAATTTTCATCATCATAAAATGGAGAGCGGGATGGCAATGAAATGGGCTTTAATGGCTTGTCTGGTGCTTAGCTCGCTCTCCATGGCGAATTCTGAAACTTATCAAGATTGCTACAGCTCCTGCTTCGTCGTATGCGCCGTCACGCCCGGCATCGCCTTCTCCGACTGCCCGTCGAGATGTCTGCATTCTTGCAATGGCGGATCTACCAAGGGCCAAGCGGAGCCTCACAAATTATAAAGTCTTTATATAATGTTTAATTAATAATACGTTTGCCTTATTTCTTCAAGGTTGATTCATGCTTCAATGCTCCTTTGACCTGGGTTTGACTCCACTGGCCCCTATTTTAATTTTTAATTTTTATTTTATCTCATTTCTGAGACATATTTATACATTCTTTTAATTTTCAATATTTTTATTTATTTATCCGGATATTACTCTTCTTATCTCATTTTCTAATTTTCCAATCTTATATATTTAACATTTTATATAATTTTGTAAGTATTATTACTTAATCTACACACTATACGGGGAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATATAAAAATTTCACTTTCTATCAGTGATAGATCCTATCGCTCAAGCTGTAGAATTCTATTGCAGTATTTTGTGAGCTCGGGCCCATTTGGATTGACTTGAGAAAAAAATATTTTTCAAAAAACTCATTTTTATTTAAACTATTTTGATAAAAACTGTTTAAAATACCTTTCAAAAACTATTTTGAACCGTTGCCAAATACTTAAAATTTTTTCAAAACGACTTATTTTTAAAATTAAACACTTGAAAATGTATTCCAAACACACTATTCGAATATGCAAGTTGTTTGTGTGCCAACAAACAGAAAGTTTTATAAGGACTAACTCATATATTTCTATATTTTCTATGTGAAATCTCAACATATACTTTAAAATCAATGGAAAAAGCCAAGAAGAAAAGAGAGAGAGGCAAGGCTCATTTCTTAATACTTATTAAGTTGAAGAGGATTATGTTAAAAATAATATTTTAATATTTTTTTTTCCCTAATTTGCTTTCTTAACATTTTTATTTGGAAGATAACATGAATAAAAAAGTTTAAAAGAAAGTTTTTATCTTTGTTTGAAAAAGTATTGCTGGGATCACATGTGAAGTTTTCTTTTGTTTTGTTGATGCTGAAAGAGAAGTGGGGAACTGTGTGGAATTCTTGCTCTCAAATATGTTCCATTGATTGAATCTGCATATCTGCTAAATGAAGCCATTAAACTACAATTTCTTTTCTTTTCTTTTCTTTTCTGGAAAAGATAAGTACAAATATATATATAATATAAGTTATTGTGTTTTGTTGGAATTTCTCTTTACACACTAAAGAAAGATTTGGGTTTAAGTGTTGAGGCAAATTAAGCTAACTTTATATTTTGATTTCTAATATTATATTTTAGTTTTTTTTTATTAAATTTTATTTGATAACTATTTCATTTTTTTGATAATTAAATTTATAAACACAATTTTTACCCTTTTTGTTTTGTTATCTATTCATTAGGAATGTTTTAAAAAACAAGTTATATTTTAAAAACTTAAAAAAAATAGTTTATAAAAAGGAAAATTTTTAAAAATAGAAAAATAAGAGAAACTATTTACACAAAATAGCAAAATTTTTAGATAGTTGTGATAGACGTTAATAGAAGTCTATAAGAGTATATCAGTGATGGAAATGATAAAAGTCTATCACTGATAAATACTGATAGAAGTCTACCAATGTCTATTAGTTTTTTTTTTTTTTTTTAAATAGTTTGATATTTTTTCTATTTGTGAAAATTTTTTCTTATAAAAACTTGTATTTGTTTTTAGAATTGCTCAAATGTTTAGTTAGAAAAGATAAAAACTTTGGAAATTAGTTATAAGAAAACAAACAATATTTTTAAAAAATAAAAAAATTAAATAATTATCAAACAGACATTAATTAAGTATATTTTTCAAAATAGATATGGCTATTTGTTTGAGCTCTCAAATCAACTGTGTCTAAACTTGAGCCTATTTAAGTCTCCACCATAGAATAGGAAGGGAGAAAACAAAGGCTTCATTTTCATCCTCATCAGTCGTCAATGGAGAGCAACATGGGAAAGAAATGGGCATTAATGTCTTGGCTGCTGCTGACCTCGCTGATCTCCACGGCCAATTCCACCTCCTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCCTCACGCCCGGTGTCTCCTTCTCCGACTGCCCCTTGAGATGCCTGCAAGCTTGCATCATCCCGTCTTTTCCTATCGATAACGCCAACGTTCATCGGCAACAACAAAATCAATTCTTCTGTGAGCTCGGCTGCGCAGCTTCCTCATGTACCAAGTTTAGCACAAAGCAAAATCCAGGTTTGAAATTTACATTCCGTTTTTAGTTATTTTTTAGATAGTTGAGATAGAGAAGTTTATCAAAGTCTACTAGAAATAATAGAAGTTTATAACTGATAGATGTTGATAGAAATCTATCGATGTCTATCATTTTTTTATTTACTATTTTTTATTATTTAATAAACATAAAATTTCGTAAGGACTAATGTATTAGTTATGAAGCGGATTATGTTAAAAATAATACTTAATTTTTTTTTATCTCTAGTTTGCTTTCTTAACATTTTTATTTTGAAGATTACGAATCTATGAGTATAAAAACGTTTTGACGAATTCTTTTTTTTTTTTTTTTTTTAAATATTTATTTATGAAAATGTATTGCTTGGTTCACATGTGAAGTCTTTTTTTATTTTTTATTTTTTAATGTTGATGCAGCTGAAAAAGAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTTCATGGATTGATCTGCATCTGCTAAATGAAGCCAATAAACTACTTTTTTTCTTTCTTTTTTTTTTTCCCCCCTTTTTGTTGAAAAAATAAGTACATAGTATAAGTAATATATTGAGTTTTATTTAGAAATGAAACTACATTATTATTGCTGGAATTCCATTCAATACTAAAGAAATATTTTGGGTTTAAGTGCTAAGGC TGTCCACCGTAGAAGAGGAAGGGAGATCAAAACAAAGGCTTAATTTTCATCATCATAAAATGGAGAGCGGGATGGCAATGAAATGGGCTTTAATGGCTTGTCTGGTGCTTAGCTCGCTCTCCATGGCGAATTCTGAAACTTATCAAGATTGCTACAGCTCCTGCTTCGTCGTATGCGCCGTCACGCCCGGCATCGCCTTCTCCGACTGCCCGTCGAGATTATTGCTGGGATCACATGTGAAGTTTTCTTTTGTTTTGTTGATGCTGAAAGAGAAGTGGGGAACTTCGTCAATGGAGAGCAACATGGGAAAGAAATGGGCATTAATGTCTTGGCTGCTGCTGACCTCGCTGATCTCCACGGCCAATTCCACCTCCTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCCTCACGCCCGGTGTCTCCTTCTCCGACTGCCCCTTGAGATGCCTGCAAGCTTGCATCATCCCGTCTTTTCCTATCGATAACGCCAACGTTCATCGGCAACAACAAAATCAATTCTTCTGTGAGCTCGGCTGCGCAGCTTCCTCATCTGAAAAAGAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTTCATGGATTGATCTGCATCTGCTAAATGAAGCCAATAAACTACTTTTTTTCTTTCTTTTTTTTTTTCCCCCCTTTTTGTTGAAAAAATAAGTACATAGTATAAGTAATATATTGAGTTTTATTTAGAAATGAAACTACATTATTATTGCTGGAATTCCATTCAATACTAAAGAAATATTTTGGGTTTAAGTGCTAAGGC ATGGAGAGCGGGATGGCAATGAAATGGGCTTTAATGGCTTGTCTGGTGCTTAGCTCGCTCTCCATGGCGAATTCTGAAACTTATCAAGATTGCTACAGCTCCTGCTTCGTCGTATGCGCCGTCACGCCCGGCATCGCCTTCTCCGACTGCCCGTCGAGATTATTGCTGGGATCACATGTGAAGTTTTCTTTTGTTTTGTTGATGCTGAAAGAGAAGTGGGGAACTTCGTCAATGGAGAGCAACATGGGAAAGAAATGGGCATTAATGTCTTGGCTGCTGCTGACCTCGCTGATCTCCACGGCCAATTCCACCTCCTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCCTCACGCCCGGTGTCTCCTTCTCCGACTGCCCCTTGAGATGCCTGCAAGCTTGCATCATCCCGTCTTTTCCTATCGATAACGCCAACGTTCATCGGCAACAACAAAATCAATTCTTCTGTGAGCTCGGCTGCGCAGCTTCCTCATCTGAAAAAGAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTTCATGGATTGA MESGMAMKWALMACLVLSSLSMANSETYQDCYSSCFVVCAVTPGIAFSDCPSRLLLGSHVKFSFVLLMLKEKWGTSSMESNMGKKWALMSWLLLTSLISTANSTSFQECYATCFVICALTPGVSFSDCPLRCLQACIIPSFPIDNANVHRQQQNQFFCELGCAASSSEKEVGRCVDSCSQTCFMD
BLAST of Lsi02G027700 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 7.1e-41 Identity = 90/120 (75.00%), Postives = 102/120 (85.00%), Query Frame = 1
BLAST of Lsi02G027700 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1
BLAST of Lsi02G027700 vs. TrEMBL
Match: A0A061G8T8_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027734 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12 Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 1
BLAST of Lsi02G027700 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12 Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1
BLAST of Lsi02G027700 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11 Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 1
BLAST of Lsi02G027700 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus]) HSP 1 Score: 175.3 bits (443), Expect = 1.0e-40 Identity = 90/120 (75.00%), Postives = 102/120 (85.00%), Query Frame = 1
BLAST of Lsi02G027700 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 171.8 bits (434), Expect = 1.1e-39 Identity = 89/120 (74.17%), Postives = 100/120 (83.33%), Query Frame = 1
BLAST of Lsi02G027700 vs. NCBI nr
Match: gi|694353623|ref|XP_009358204.1| (PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri]) HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14 Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
BLAST of Lsi02G027700 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica]) HSP 1 Score: 87.0 bits (214), Expect = 3.7e-14 Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
BLAST of Lsi02G027700 vs. NCBI nr
Match: gi|590617165|ref|XP_007023712.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao]) HSP 1 Score: 80.5 bits (197), Expect = 3.4e-12 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |