Lsi02G027680 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G027680
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr02 : 33942056 .. 33943440 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGGTTCGGAATTGGTCATGGAGAGCGAGCTCAGCACCAAACAAGCCATTAAAGCCCATTTCATTATTGCCATACATTGGTTCAATTTGATTTGGTTGAATTAGTAATATTATTGATTTTCAAGAGGGGTACGTACATTGGTTCATTTTTAAACTAAATAAATTAAAGAATTTAGACATTTAGACAATTTTTTAAGTGAAAAATAGAATTAGACATTTTAAGAAAAATCTTTTTAATTTAAACATTTGTCCCGTATGTTTGTTCAACGAAATTAAATGCAAGTAGTTATTTGATTTTCTATTACGAAAAATTGCACAAATCATTTCTGAACTTTTAATTTGATCAACCACATAACTTTGTGGTTTGTTACAATTAAACTCATAAACTCTTCTAATTTGATTAATTAGTCCCGGAGTTTGTTAATTGTCGTAATTAGAGCCCGGAAGTTTGACTTCATTTAGCAGATGCGGATCATCAATTCATTGAACATGTTTGAGAGCAAGAATCCACACAGCTCCCCACTTCTTTCTCAGCTGCCATCAACAAAACCAAAGAAAACATCACACGTGAACCAAGCAATACTTTTTCATAAATAAATAATTATTAAAAAAATCGTCTAAACTTTTTTATACTCGTAATATTCCAAATAAAAATGTTAAGAAAAGCAAATTAGGGGAAAATACTTTTAGACATTATTTTTAGGTAAATTTTAGATAGATTAAAATGTTAAAATATTTACGGAAAATATAAAAAAGACACATAATATTAATAAACTTCTCATAGACTTTTATCATTTCTATCAACAACTATCTAAAACTTTAGAAATTCCTTATCTCACGATTAAAAATAAGAAAATATAGAAGAAAATCGTTTTGATTTCAATTTCTAAATTTAGTACTAAGATTTGAAAACAAACAAAATGAAAATAACACTCAAAACCTAGCATCAGAAAAAATATATCAAATAAGGGAGTGGAGATTTGGAACCTGGATTTTCCTTTGTGCTAAACTTGGTACACAAGGAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

mRNA sequence

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

Coding sequence (CDS)

ATGGACGACATTGGTGTTGTTCATAGAAGTAGACGGGTTCAAGCAAGAATGCAGGCATCTCGACGGGCAGTCGGAGAAGGAGATCCCAGGCGTGACGGTGCATACGACGAAGCAGGAGCTGTAACAATCTTGAAAAGTTGCACAGCCAAGCTTGCAGAAGAAGTGATTTTGTTGTGGCGACTGATCATGGAGCCTGGCGTTGTAATGAGACGGGGACATGCAAGTATGCAGGCATCTCGACGGGCAGTCGAAGAAGGAGACACCGGGCGTGATGGCGCATGTGATGAAGCAGGAATGGTAGCAATCGAAAAAATCGTAGGAATTGGCCATGGAGAGCGAGCAGAGCAGCAGCCAACCCATTAA

Protein sequence

MDDIGVVHRSRRVQARMQASRRAVGEGDPRRDGAYDEAGAVTILKSCTAKLAEEVILLWRLIMEPGVVMRRGHASMQASRRAVEEGDTGRDGACDEAGMVAIEKIVGIGHGERAEQQPTH
Homology
[Close]
BLAST of Lsi02G027680 vs. TrEMBL
Match: A0A0A0K910_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441630 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 46  SCTAKLAEEVILLWRLIMEPGVV--MRRGHASMQASRRAVEEGDTGRDGACDEAGMVAIE 105
           SCTAKLAEE+ILL   + + G+V   RR  AS+QAS+ AV EG+ G DGA DEAG VA  
Sbjct: 20  SCTAKLAEEMILLLLPMDDIGIVNRKRRDDASLQASQWAVGEGNAGCDGAYDEAGGVAFL 79

Query: 106 KIVGIGHGERAEQQPTH 121
           K  GI  GER +QQP+H
Sbjct: 80  KRGGISGGERGQQQPSH 96

[Close]
BLAST of Lsi02G027680 vs. NCBI nr
Match: gi|700190111|gb|KGN45344.1| (hypothetical protein Csa_7G441630 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1 

Query: 46  SCTAKLAEEVILLWRLIMEPGVV--MRRGHASMQASRRAVEEGDTGRDGACDEAGMVAIE 105
           SCTAKLAEE+ILL   + + G+V   RR  AS+QAS+ AV EG+ G DGA DEAG VA  
Sbjct: 20  SCTAKLAEEMILLLLPMDDIGIVNRKRRDDASLQASQWAVGEGNAGCDGAYDEAGGVAFL 79

Query: 106 KIVGIGHGERAEQQPTH 121
           K  GI  GER +QQP+H
Sbjct: 80  KRGGISGGERGQQQPSH 96

The following BLAST results are available for this feature:
BLAST of Lsi02G027680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi02G027680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K910_CUCSA1.9e-1058.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441630 PE=4 SV=1[more]
BLAST of Lsi02G027680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi02G027680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190111|gb|KGN45344.1|2.7e-1058.44hypothetical protein Csa_7G441630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G027680.1Lsi02G027680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G027680Csa7G441630Cucumber (Chinese Long) v2culsiB503
Lsi02G027680ClCG09G002240Watermelon (Charleston Gray)lsiwcgB160
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G027680Melon (DHL92) v3.6.1lsimedB194
Lsi02G027680Melon (DHL92) v3.6.1lsimedB222
Lsi02G027680Silver-seed gourdcarlsiB106
Lsi02G027680Silver-seed gourdcarlsiB114
Lsi02G027680Silver-seed gourdcarlsiB176
Lsi02G027680Silver-seed gourdcarlsiB684
Lsi02G027680Silver-seed gourdcarlsiB937
Lsi02G027680Cucumber (Chinese Long) v3cuclsiB198
Lsi02G027680Cucumber (Chinese Long) v3cuclsiB538
Lsi02G027680Watermelon (97103) v2lsiwmbB199
Lsi02G027680Watermelon (97103) v2lsiwmbB213
Lsi02G027680Wax gourdlsiwgoB221
Lsi02G027680Wax gourdlsiwgoB270
Lsi02G027680Wax gourdlsiwgoB286
Lsi02G027680Bottle gourd (USVL1VR-Ls)lsilsiB117
Lsi02G027680Cucurbita maxima (Rimu)cmalsiB051
Lsi02G027680Cucurbita maxima (Rimu)cmalsiB238
Lsi02G027680Cucurbita maxima (Rimu)cmalsiB348
Lsi02G027680Cucurbita maxima (Rimu)cmalsiB418
Lsi02G027680Cucurbita maxima (Rimu)cmalsiB823
Lsi02G027680Cucurbita moschata (Rifu)cmolsiB037
Lsi02G027680Cucurbita moschata (Rifu)cmolsiB225
Lsi02G027680Cucurbita moschata (Rifu)cmolsiB337
Lsi02G027680Cucurbita moschata (Rifu)cmolsiB405
Lsi02G027680Cucurbita moschata (Rifu)cmolsiB810
Lsi02G027680Cucurbita pepo (Zucchini)cpelsiB113
Lsi02G027680Cucurbita pepo (Zucchini)cpelsiB442
Lsi02G027680Wild cucumber (PI 183967)cpilsiB517
Lsi02G027680Melon (DHL92) v3.5.1lsimeB185
Lsi02G027680Melon (DHL92) v3.5.1lsimeB213
Lsi02G027680Watermelon (Charleston Gray)lsiwcgB204
Lsi02G027680Watermelon (97103) v1lsiwmB176
Lsi02G027680Watermelon (97103) v1lsiwmB191
Lsi02G027680Cucumber (Gy14) v2cgyblsiB167
Lsi02G027680Cucumber (Gy14) v2cgyblsiB472