Lsi02G027110 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G027110
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr02 : 33454056 .. 33454247 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGAGGAGTTGGTTTTGTTTTGGGTTTCATTGCTGCTGTTTTTGTTCACCATGCCACCGCCCAGACGGTGCACGTCGTCGGCAACACCACCGGTTGGACGATTCTGCTCGGTAATACTTTCTATTCCATTCCGATTGGGCTGATAAAAACATCTTTGTCGTTGGCGATTCTCTTGGTAAAAATGTAA

mRNA sequence

ATGGCTGGAGGAGTTGGTTTTGTTTTGGGTTTCATTGCTGCTGTTTTTGTTCACCATGCCACCGCCCAGACGGTGCACGTCGTCGGCAACACCACCGGTTGGACGATTCTGCTCGGTAATACTTTCTATTCCATTCCGATTGGGCTGATAAAAACATCTTTGTCGTTGGCGATTCTCTTGGTAAAAATGTAA

Coding sequence (CDS)

ATGGCTGGAGGAGTTGGTTTTGTTTTGGGTTTCATTGCTGCTGTTTTTGTTCACCATGCCACCGCCCAGACGGTGCACGTCGTCGGCAACACCACCGGTTGGACGATTCTGCTCGGTAATACTTTCTATTCCATTCCGATTGGGCTGATAAAAACATCTTTGTCGTTGGCGATTCTCTTGGTAAAAATGTAA

Protein sequence

MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGNTFYSIPIGLIKTSLSLAILLVKM
Homology
[Close]
BLAST of Lsi02G027110 vs. TrEMBL
Match: A0A0A0K6Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432500 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-09
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGNTFYS 45
          MAG VGFVLGFIA VFVHHA AQ VHVVG TTGWTI    TFYS
Sbjct: 1  MAGRVGFVLGFIAVVFVHHAAAQKVHVVGETTGWTIPSTETFYS 44

[Close]
BLAST of Lsi02G027110 vs. TrEMBL
Match: A0A0A0K8S5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432510 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-09
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGNTFYS 45
          MAGG+GFVL FIA VFVHHA AQ VHVVG+ TGWTI    TFYS
Sbjct: 1  MAGGIGFVLSFIALVFVHHAAAQKVHVVGDATGWTIPPDTTFYS 44

[Close]
BLAST of Lsi02G027110 vs. TrEMBL
Match: D1MWY8_CITLA (Blue copper protein OS=Citrullus lanatus subsp. vulgaris GN=CitBC PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-07
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILL-GNTFYS 45
          MA G+GFVLGF+A VF+ HATAQTVHVVG+ TGWT+   G  FYS
Sbjct: 1  MAAGLGFVLGFLAVVFLQHATAQTVHVVGDNTGWTVPQDGPAFYS 45

[Close]
BLAST of Lsi02G027110 vs. TrEMBL
Match: A0A0A0KBU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432480 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGN-TFYS 45
          M+G VG VLG IA VFVHHATAQT+HVVG++ GWT+  G   FYS
Sbjct: 1  MSGEVGIVLGLIAVVFVHHATAQTIHVVGDSDGWTVPQGGAAFYS 45

[Close]
BLAST of Lsi02G027110 vs. NCBI nr
Match: gi|700190035|gb|KGN45268.1| (hypothetical protein Csa_7G432500 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 35/44 (79.55%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGNTFYS 45
          MAG VGFVLGFIA VFVHHA AQ VHVVG TTGWTI    TFYS
Sbjct: 1  MAGRVGFVLGFIAVVFVHHAAAQKVHVVGETTGWTIPSTETFYS 44

[Close]
BLAST of Lsi02G027110 vs. NCBI nr
Match: gi|659122393|ref|XP_008461120.1| (PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGNTFYS 45
          MAGG+GFVL FIA VFVHHA AQ VHVVG+ TGWTI    TFYS
Sbjct: 1  MAGGIGFVLSFIAVVFVHHAAAQKVHVVGDATGWTIPPATTFYS 44

[Close]
BLAST of Lsi02G027110 vs. NCBI nr
Match: gi|659122395|ref|XP_008461121.1| (PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-08
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGNTFYS 45
          MAG VGFVLGFIA VFVHH  AQ VHVVG+TTGWT+   +TFYS
Sbjct: 1  MAGQVGFVLGFIAVVFVHHVAAQKVHVVGDTTGWTVPSTDTFYS 44

[Close]
BLAST of Lsi02G027110 vs. NCBI nr
Match: gi|449436611|ref|XP_004136086.1| (PREDICTED: cucumber peeling cupredoxin-like isoform X2 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILLGNTFYS 45
          MAGG+GFVL FIA VFVHHA AQ VHVVG+ TGWTI    TFYS
Sbjct: 1  MAGGIGFVLSFIALVFVHHAAAQKVHVVGDATGWTIPPDTTFYS 44

[Close]
BLAST of Lsi02G027110 vs. NCBI nr
Match: gi|270308990|dbj|BAI52948.1| (blue copper protein precursor [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-07
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 1  MAGGVGFVLGFIAAVFVHHATAQTVHVVGNTTGWTILL-GNTFYS 45
          MA G+GFVLGF+A VF+ HATAQTVHVVG+ TGWT+   G  FYS
Sbjct: 1  MAAGLGFVLGFLAVVFLQHATAQTVHVVGDNTGWTVPQDGPAFYS 45

The following BLAST results are available for this feature:
BLAST of Lsi02G027110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi02G027110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6Y7_CUCSA3.2e-0979.55Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432500 PE=4 SV=1[more]
A0A0A0K8S5_CUCSA9.3e-0975.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432510 PE=4 SV=1[more]
D1MWY8_CITLA5.1e-0768.89Blue copper protein OS=Citrullus lanatus subsp. vulgaris GN=CitBC PE=2 SV=1[more]
A0A0A0KBU0_CUCSA1.9e-0666.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432480 PE=4 SV=1[more]
BLAST of Lsi02G027110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi02G027110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190035|gb|KGN45268.1|4.6e-0979.55hypothetical protein Csa_7G432500 [Cucumis sativus][more]
gi|659122393|ref|XP_008461120.1|7.8e-0975.00PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo][more]
gi|659122395|ref|XP_008461121.1|1.0e-0875.00PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo][more]
gi|449436611|ref|XP_004136086.1|1.3e-0875.00PREDICTED: cucumber peeling cupredoxin-like isoform X2 [Cucumis sativus][more]
gi|270308990|dbj|BAI52948.1|7.3e-0768.89blue copper protein precursor [Citrullus lanatus subsp. vulgaris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G027110.1Lsi02G027110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G027110Bottle gourd (USVL1VR-Ls)lsilsiB052
Lsi02G027110Bottle gourd (USVL1VR-Ls)lsilsiB115
Lsi02G027110Bottle gourd (USVL1VR-Ls)lsilsiB117
Lsi02G027110Cucumber (Gy14) v1cgylsiB109
Lsi02G027110Cucumber (Gy14) v1cgylsiB133
Lsi02G027110Cucumber (Gy14) v1cgylsiB206
Lsi02G027110Cucurbita maxima (Rimu)cmalsiB051
Lsi02G027110Cucurbita maxima (Rimu)cmalsiB238
Lsi02G027110Cucurbita maxima (Rimu)cmalsiB348
Lsi02G027110Cucurbita maxima (Rimu)cmalsiB418
Lsi02G027110Cucurbita maxima (Rimu)cmalsiB721
Lsi02G027110Cucurbita maxima (Rimu)cmalsiB822
Lsi02G027110Cucurbita moschata (Rifu)cmolsiB037
Lsi02G027110Cucurbita moschata (Rifu)cmolsiB225
Lsi02G027110Cucurbita moschata (Rifu)cmolsiB337
Lsi02G027110Cucurbita moschata (Rifu)cmolsiB405
Lsi02G027110Cucurbita moschata (Rifu)cmolsiB712
Lsi02G027110Cucurbita moschata (Rifu)cmolsiB809
Lsi02G027110Cucurbita pepo (Zucchini)cpelsiB082
Lsi02G027110Cucurbita pepo (Zucchini)cpelsiB113
Lsi02G027110Cucurbita pepo (Zucchini)cpelsiB262
Lsi02G027110Cucurbita pepo (Zucchini)cpelsiB442
Lsi02G027110Cucurbita pepo (Zucchini)cpelsiB499
Lsi02G027110Wild cucumber (PI 183967)cpilsiB111
Lsi02G027110Wild cucumber (PI 183967)cpilsiB268
Lsi02G027110Wild cucumber (PI 183967)cpilsiB517
Lsi02G027110Cucumber (Chinese Long) v2culsiB113
Lsi02G027110Cucumber (Chinese Long) v2culsiB268
Lsi02G027110Cucumber (Chinese Long) v2culsiB503
Lsi02G027110Melon (DHL92) v3.5.1lsimeB185
Lsi02G027110Melon (DHL92) v3.5.1lsimeB219
Lsi02G027110Melon (DHL92) v3.5.1lsimeB223
Lsi02G027110Watermelon (Charleston Gray)lsiwcgB160
Lsi02G027110Watermelon (Charleston Gray)lsiwcgB168
Lsi02G027110Watermelon (Charleston Gray)lsiwcgB196
Lsi02G027110Watermelon (Charleston Gray)lsiwcgB204
Lsi02G027110Watermelon (97103) v1lsiwmB176
Lsi02G027110Watermelon (97103) v1lsiwmB191
Lsi02G027110Watermelon (97103) v1lsiwmB218
Lsi02G027110Cucumber (Gy14) v2cgyblsiB251
Lsi02G027110Cucumber (Gy14) v2cgyblsiB472
Lsi02G027110Melon (DHL92) v3.6.1lsimedB194
Lsi02G027110Melon (DHL92) v3.6.1lsimedB234
Lsi02G027110Silver-seed gourdcarlsiB106
Lsi02G027110Silver-seed gourdcarlsiB130
Lsi02G027110Silver-seed gourdcarlsiB176
Lsi02G027110Silver-seed gourdcarlsiB516
Lsi02G027110Silver-seed gourdcarlsiB937
Lsi02G027110Cucumber (Chinese Long) v3cuclsiB289
Lsi02G027110Cucumber (Chinese Long) v3cuclsiB538
Lsi02G027110Watermelon (97103) v2lsiwmbB189
Lsi02G027110Watermelon (97103) v2lsiwmbB199
Lsi02G027110Watermelon (97103) v2lsiwmbB213
Lsi02G027110Wax gourdlsiwgoB220
Lsi02G027110Wax gourdlsiwgoB270