Lsi02G026850 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G026850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Plant protein of unknown function (DUF247)
Location	chr02 : 33296415 .. 33297098 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTCTCGAATGCCTATTTTCACTAAGAAAGGGTGAAGAAGAAAATGATCTAGAAAAGGGGAGTTCAAGGAAAGTAAAAGTTAAGCCTCCTTTGTTGGAGGAAATAACAATTCCTTCAGTGTCCGAGCTGACAAAATCAGGTGTTTGTTTCTTGCCCATCGATGGAGGCGTCTCAGCCGTTGCCTTTGACTCAAAGGCAGTGATATTTTACCTTCCCATCGTTAATCTGGATGTGAACTCTGAAGTAGTATTGAGAAACTTAGTCGCATATGAAGCTTCAAAACCATCGGGGCCTTTGGTTTTCACCCGTTTCATTGAACTAATGAACGGCATCATCGATTCTGAGGAGGATGTGAAATTGCTGAAGAAAAAAGGAATCATTCTGAACCATTTGGATAGCGATGCAGAAGTTGCCAAGCTCTGGAACGGGATGAGCAAATCCATCAAGTTGACGAAGGTGCCATTCTTGGATAAGGTAATTGAAGATGTAAATAAGCATTACAGTAGTAGATGGAAGGTTAAAGCTGCAAAATTTGTAGAAAAGTATGTGTTTGGTTCATGGCCATTGCTTGCACTTCTGGCTACCATTTTGCTCTTGGCCATGACTGCATTGCAAGCATTTTGCTCAGTTTATAGCTGCTCTCGGTTCTTCCATGATCTCAACACAGACGGGACCTAG

mRNA sequence

ATGAAGCCTCTCGAATGCCTATTTTCACTAAGAAAGGGTGAAGAAGAAAATGATCTAGAAAAGGGGAGTTCAAGGAAAGTAAAAGTTAAGCCTCCTTTGTTGGAGGAAATAACAATTCCTTCAGTGTCCGAGCTGACAAAATCAGGTGTTTGTTTCTTGCCCATCGATGGAGGCGTCTCAGCCGTTGCCTTTGACTCAAAGGCAGTGATATTTTACCTTCCCATCGTTAATCTGGATGTGAACTCTGAAGTAGTATTGAGAAACTTAGTCGCATATGAAGCTTCAAAACCATCGGGGCCTTTGGTTTTCACCCGTTTCATTGAACTAATGAACGGCATCATCGATTCTGAGGAGGATGTGAAATTGCTGAAGAAAAAAGGAATCATTCTGAACCATTTGGATAGCGATGCAGAAGTTGCCAAGCTCTGGAACGGGATGAGCAAATCCATCAAGTTGACGAAGGTGCCATTCTTGGATAAGGTAATTGAAGATGTAAATAAGCATTACAGTAGTAGATGGAAGGTTAAAGCTGCAAAATTTGTAGAAAAGTATGTGTTTGGTTCATGGCCATTGCTTGCACTTCTGGCTACCATTTTGCTCTTGGCCATGACTGCATTGCAAGCATTTTGCTCAGTTTATAGCTGCTCTCGGTTCTTCCATGATCTCAACACAGACGGGACCTAG

Coding sequence (CDS)

ATGAAGCCTCTCGAATGCCTATTTTCACTAAGAAAGGGTGAAGAAGAAAATGATCTAGAAAAGGGGAGTTCAAGGAAAGTAAAAGTTAAGCCTCCTTTGTTGGAGGAAATAACAATTCCTTCAGTGTCCGAGCTGACAAAATCAGGTGTTTGTTTCTTGCCCATCGATGGAGGCGTCTCAGCCGTTGCCTTTGACTCAAAGGCAGTGATATTTTACCTTCCCATCGTTAATCTGGATGTGAACTCTGAAGTAGTATTGAGAAACTTAGTCGCATATGAAGCTTCAAAACCATCGGGGCCTTTGGTTTTCACCCGTTTCATTGAACTAATGAACGGCATCATCGATTCTGAGGAGGATGTGAAATTGCTGAAGAAAAAAGGAATCATTCTGAACCATTTGGATAGCGATGCAGAAGTTGCCAAGCTCTGGAACGGGATGAGCAAATCCATCAAGTTGACGAAGGTGCCATTCTTGGATAAGGTAATTGAAGATGTAAATAAGCATTACAGTAGTAGATGGAAGGTTAAAGCTGCAAAATTTGTAGAAAAGTATGTGTTTGGTTCATGGCCATTGCTTGCACTTCTGGCTACCATTTTGCTCTTGGCCATGACTGCATTGCAAGCATTTTGCTCAGTTTATAGCTGCTCTCGGTTCTTCCATGATCTCAACACAGACGGGACCTAG

Protein sequence

MKPLECLFSLRKGEEENDLEKGSSRKVKVKPPLLEEITIPSVSELTKSGVCFLPIDGGVSAVAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAKFVEKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNTDGT

Homology

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BLAST of Lsi02G026850 vs. Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 7.5e-62
Identity = 120/209 (57.42%), Postives = 160/209 (76.56%), Query Frame = 1


Query: 7   LFSLRKGEEENDLEKGSSRKVKVKPPLLEEITIPSVSELTKSGVCFLPI-DGGVSAVAFD 66
           LF+ ++ E     ++  S     KPPL+EE+TIPSVS+L K+GV F P   G +S V FD
Sbjct: 313 LFTRQENEATTTRQESVSILDIEKPPLVEELTIPSVSDLHKAGVRFKPTAHGNISTVTFD 372

Query: 67  SKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVKLLKK 126
           S +  FYLP++NLD+N+E VLRNLVAYEA+  SGPLVFTR+ EL+NGIIDSEEDV+LL++
Sbjct: 373 SNSGQFYLPVINLDINTETVLRNLVAYEATNTSGPLVFTRYTELINGIIDSEEDVRLLRE 432

Query: 127 KGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAKFVEKYV 186
           +G++++ L SD E A++WNGMSKS++LTKV FLDK IEDVN++Y+ RWKVK  + VE YV
Sbjct: 433 QGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFLDKTIEDVNRYYTGRWKVKIGRLVEVYV 492

Query: 187 FGSWPLLALLATILLLAMTALQAFCSVYS 215
           +GSW +LA LA +LLL + +LQ F  V+S
Sbjct: 493 YGSWQILAFLAAVLLLMLVSLQLFSLVFS 521

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BLAST of Lsi02G026850 vs. TrEMBL
Match: A0A0A0K8N9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432200 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.8e-102
Identity = 201/228 (88.16%), Postives = 208/228 (91.23%), Query Frame = 1


Query: 1   MKPLECLFSLRKGEEENDLEKGSSRKV-KVKPPLLEEITIPSVSELTKSGVCFLPIDGGV 60
           MKPL  L SLRKGEEENDLEKGSS KV K+K PL EEI IPSVS+LTKSGV F  IDGGV
Sbjct: 346 MKPLNHLCSLRKGEEENDLEKGSSWKVGKIKLPLSEEIAIPSVSQLTKSGVHFSAIDGGV 405

Query: 61  SAVAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEED 120
           SAVAFD KAVIFYLP +NLDVNSEVVLRNLVAYEASK SGPLVFTRFIELMNGIIDSEED
Sbjct: 406 SAVAFDPKAVIFYLPTINLDVNSEVVLRNLVAYEASKASGPLVFTRFIELMNGIIDSEED 465

Query: 121 VKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAK 180
           VKLLK+KGIILNHL SDAEVA LWNGMSKSIKLTKVPFLDKVIEDVNK+YS RWKVKA+K
Sbjct: 466 VKLLKEKGIILNHLKSDAEVADLWNGMSKSIKLTKVPFLDKVIEDVNKYYSGRWKVKASK 525

Query: 181 FVEKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNTDGT 228
           FV+KYVFGSWPLLA LATILLLAMTALQAFCSVYSCSRFFH LN DGT
Sbjct: 526 FVKKYVFGSWPLLAFLATILLLAMTALQAFCSVYSCSRFFHHLNADGT 573

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BLAST of Lsi02G026850 vs. TrEMBL
Match: M5WZH6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026580mg PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 4.6e-74
Identity = 146/223 (65.47%), Postives = 174/223 (78.03%), Query Frame = 1


Query: 2   KPLECLFSLRKGEEENDLEKGSSRKVKVKPPLLEEITIPSVSELTKSGVCFLPIDGGVSA 61
           +P+  LFS +  EE     + SS  +  KPPL+EEITIPSVS+L KSGV F+  +G +S 
Sbjct: 338 QPVSYLFSTQDKEETKPENENSSNSIS-KPPLIEEITIPSVSDLVKSGVRFVKTNGSLST 397

Query: 62  VAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVK 121
           ++FD K V FYLP  +LDVN+EV+LRNLVAYE S  SGPLV TR+ ELMNGIID+EEDVK
Sbjct: 398 ISFDPKTVTFYLPATSLDVNTEVILRNLVAYEVSNASGPLVLTRYTELMNGIIDTEEDVK 457

Query: 122 LLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAKFV 181
           LL++KGIILN L SD EVAK+WNGMSKSI+LTKVPFLDK IEDVNK+Y+ RWKVK  KF+
Sbjct: 458 LLREKGIILNRLKSDEEVAKVWNGMSKSIRLTKVPFLDKAIEDVNKYYNGRWKVKMTKFM 517

Query: 182 EKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNT 225
           + YVFGSW  LA+LA +LLL +  LQAFCSVYSCSR FH   T
Sbjct: 518 KVYVFGSWQFLAVLAGLLLLLLMTLQAFCSVYSCSRVFHITTT 559

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BLAST of Lsi02G026850 vs. TrEMBL
Match: F6HNY3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01170 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.9e-73
Identity = 143/221 (64.71%), Postives = 177/221 (80.09%), Query Frame = 1


Query: 2   KPLECLFSLRKGEEENDLEKGSSRKVK--VKPPLLEEITIPSVSELTKSGVCFLPIDGGV 61
           +P+E  F   + +EEN  E G+S+     VKPPL+EEITIPSVSEL+KSGV FLP +GG+
Sbjct: 229 QPVEYFF-FSQDKEENKPENGNSKSNSSIVKPPLIEEITIPSVSELSKSGVRFLPTNGGI 288

Query: 62  SAVAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEED 121
           S++ FD+K V  YLP V+LDVN+EV LRNLVAYE+S  SGPLV TR+ ELMNGIID++ED
Sbjct: 289 SSITFDAKMVTLYLPTVSLDVNTEVTLRNLVAYESSNASGPLVITRYTELMNGIIDTKED 348

Query: 122 VKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAK 181
            K L+++GI+LN L SD EVA LWNGMS+SI+LTKVPFLDKVIEDVNK++S RWKVKA K
Sbjct: 349 AKFLRERGIVLNRLKSDEEVANLWNGMSRSIRLTKVPFLDKVIEDVNKYHSGRWKVKAGK 408

Query: 182 FVEKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFH 221
           F+++YVFGSW  L  LA IL++ +  LQAFCSVYSC R F+
Sbjct: 409 FMKRYVFGSWQFLTFLAAILIVLLMTLQAFCSVYSCPRIFN 448

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BLAST of Lsi02G026850 vs. TrEMBL
Match: W9RBW3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025683 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 142/224 (63.39%), Postives = 174/224 (77.68%), Query Frame = 1


Query: 3   PLECLFSLRKGEEENDLEKGSSRKVKV-KPPLLEEITIPSVSELTKSGVCFLPIDGGVSA 62
           P E  FS    EE       SS K  + KPPL+EEITIPSV+EL+KSGV F P +G +S 
Sbjct: 340 PTEMFFSQANKEEAKPENDNSSNKTTINKPPLIEEITIPSVTELSKSGVRFSPTNGSLST 399

Query: 63  VAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVK 122
           + FD K VIFYLP ++LDVN+E +LRNL+AYEAS   GPLVFTR+ ELMNGIID+E+DVK
Sbjct: 400 ITFDPKTVIFYLPTISLDVNTEAILRNLIAYEASNAYGPLVFTRYTELMNGIIDTEDDVK 459

Query: 123 LLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAKFV 182
           LL+++G+ILN L SD EVA LWNGMSKSI+LTKVPFLDKVIEDVN +++ RWKVK  KF+
Sbjct: 460 LLRERGVILNRLKSDEEVANLWNGMSKSIRLTKVPFLDKVIEDVNTYHNGRWKVKFGKFM 519

Query: 183 EKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNTD 226
           + YVFGSW  L LLA +L+L +  LQAFCSVY+C+R FH ++TD
Sbjct: 520 KLYVFGSWRFLTLLAAVLMLLLMGLQAFCSVYTCARIFH-VSTD 562

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BLAST of Lsi02G026850 vs. TrEMBL
Match: B9HN24_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08870g PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.5e-72
Identity = 141/219 (64.38%), Postives = 170/219 (77.63%), Query Frame = 1


Query: 2   KPLECLFSLRKGEEENDLEKGSSRKVKVKPPLLEEITIPSVSELTKSGVCFLPIDGGVSA 61
           +PL+ LF  +  EE     + S  +V  +PPL+EEITIP V+EL+KSGVCF P  G + +
Sbjct: 337 QPLQHLFFSQDQEEIKPENENSDNEVN-RPPLVEEITIPCVTELSKSGVCFAPTTGNILS 396

Query: 62  VAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVK 121
           + FD KAV  YLP+++ DVN+EVVLRNLVA+EAS  SGPLVFTR+ ELMNGIID+EEDVK
Sbjct: 397 ITFDIKAVTLYLPVISFDVNTEVVLRNLVAFEASNASGPLVFTRYTELMNGIIDTEEDVK 456

Query: 122 LLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAKFV 181
            L++KGIILN L SD EVA LWNGMSKSI+LTKVPFLDKVIEDVNK+Y+ RW VK  KF+
Sbjct: 457 FLREKGIILNRLKSDGEVANLWNGMSKSIRLTKVPFLDKVIEDVNKYYNQRWTVKVGKFM 516

Query: 182 EKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFH 221
           ++YVFGSW  L LLA + LL +  LQAFCSVY CSR  H
Sbjct: 517 KRYVFGSWQFLTLLAAVFLLLLMTLQAFCSVYRCSRVLH 554

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BLAST of Lsi02G026850 vs. TAIR10
Match: AT3G02645.1 (AT3G02645.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 238.4 bits (607), Expect = 4.3e-63
Identity = 120/209 (57.42%), Postives = 160/209 (76.56%), Query Frame = 1


Query: 7   LFSLRKGEEENDLEKGSSRKVKVKPPLLEEITIPSVSELTKSGVCFLPI-DGGVSAVAFD 66
           LF+ ++ E     ++  S     KPPL+EE+TIPSVS+L K+GV F P   G +S V FD
Sbjct: 313 LFTRQENEATTTRQESVSILDIEKPPLVEELTIPSVSDLHKAGVRFKPTAHGNISTVTFD 372

Query: 67  SKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVKLLKK 126
           S +  FYLP++NLD+N+E VLRNLVAYEA+  SGPLVFTR+ EL+NGIIDSEEDV+LL++
Sbjct: 373 SNSGQFYLPVINLDINTETVLRNLVAYEATNTSGPLVFTRYTELINGIIDSEEDVRLLRE 432

Query: 127 KGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAKFVEKYV 186
           +G++++ L SD E A++WNGMSKS++LTKV FLDK IEDVN++Y+ RWKVK  + VE YV
Sbjct: 433 QGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFLDKTIEDVNRYYTGRWKVKIGRLVEVYV 492

Query: 187 FGSWPLLALLATILLLAMTALQAFCSVYS 215
           +GSW +LA LA +LLL + +LQ F  V+S
Sbjct: 493 YGSWQILAFLAAVLLLMLVSLQLFSLVFS 521

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BLAST of Lsi02G026850 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 78.2 bits (191), Expect = 7.4e-15
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 1


Query: 39  IPSVSELTKSGVCFLPIDGGVSAVAFDSKAVIFYLPIVNLDVN--SEVVLRNLVAYEASK 98
           I  V+EL  +GV F+  + G     +D +    YL I  L ++  ++ +  NL+A+E   
Sbjct: 328 IHCVTELRGAGVNFMRKETGQ---LWDIEFKNGYLKIPKLLIHDGTKSLFSNLIAFEQCH 387

Query: 99  PSGPLVFTRFIELMNGIIDSEEDVKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKL-TKV 158
                  T +I  M+ +I+S +DV  L   GII + L SD+EVA L+N + K +    K 
Sbjct: 388 TQSSNNITSYIIFMDNLINSSQDVSYLHHDGIIEHWLGSDSEVADLFNRLCKEVIFDPKD 447

Query: 159 PFLDKVIEDVNKHYSSRWKVKAAKFVEKYVFGSWPLLALLATILLLAMTALQAFCSVYS 215
            +L ++  +VN++YS +W    A   +KY    W   +  A ++LL +T  Q+F +VY+
Sbjct: 448 GYLSQLSREVNRYYSRKWNSLKATLRQKYFNNPWAYFSFSAAVILLFLTFFQSFFAVYA 503

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BLAST of Lsi02G026850 vs. TAIR10
Match: AT3G50120.1 (AT3G50120.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 72  YLPIVNLDVN--SEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVKLLKKKGII 131
           YL I  L ++  ++ +  NL+A+E          T +I  M+ +IDS EDV  L   GII
Sbjct: 380 YLEIPRLLIHDGTKSLFLNLIAFEQCHIDSSNDITSYIIFMDNLIDSHEDVSYLHYCGII 439

Query: 132 LNHLDSDAEVAKLWNGMSKSIKL-TKVPFLDKVIEDVNKHYSSRWKVKAAKFVEKYVFGS 191
            + L SD+EVA L+N + + +   T+  +L ++  +VN++Y  +W    A    KY    
Sbjct: 440 EHWLGSDSEVADLFNRLCQEVVFDTEDSYLSRLSIEVNRYYDHKWNAWRATLKHKYFNNP 499

Query: 192 WPLLALLATILLLAMTALQAFCSVYS 215
           W +++  A ++LL +T  Q+F +VY+
Sbjct: 500 WAIVSFCAAVILLVLTFSQSFYAVYA 525

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BLAST of Lsi02G026850 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 63/214 (29.44%), Postives = 102/214 (47.66%), Query Frame = 1


Query: 4   LECLFSLRKGEEENDLEKGSSRKVKVKPPLLEEITIPSVSELTKSGVCFLPIDGGVSAVA 63
           L CL  LR+G  ++         +  K P   +  I  V+EL  +GV F+  + G     
Sbjct: 288 LHCLDVLRRGLLQSSGTSDEDMSMVNKQP---QQLIHCVTELRNAGVEFMRKETGHF--- 347

Query: 64  FDSKAVIFYLPIVNLDVN--SEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVK 123
           +D +    YL I  L ++  ++ +  NL+A+E          T +I  M+ +I+S EDV 
Sbjct: 348 WDIEFKNGYLKIPKLLIHDGTKSLFLNLIAFEQCHIKSSKKITSYIIFMDNLINSSEDVS 407

Query: 124 LLKKKGIILNHLDSDAEVAKLWNGMSKSIKL-TKVPFLDKVIEDVNKHYSSRWKVKAAKF 183
            L   GII N L SD+EV+ L+NG+ K +       +L  +  +VN +Y  +W    A  
Sbjct: 408 YLHHYGIIENWLGSDSEVSDLFNGLGKEVIFDPNDGYLSALTGEVNIYYRRKWNYLKATL 467

Query: 184 VEKYVFGSWPLLALLATILLLAMTALQAFCSVYS 215
             KY    W   + +A + LL  T  Q+F +V++
Sbjct: 468 RHKYFNNPWAYFSFIAAVTLLIFTFCQSFFAVFA 495

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BLAST of Lsi02G026850 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = 1


Query: 72  YLPIVNLDVN--SEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVKLLKKKGII 131
           YL I  L ++  ++ +  NL+A+E          T +I  M+ +I+S EDV  L   GII
Sbjct: 388 YLEIPKLLIHDGTKSLFSNLIAFEQCHIESSNHITSYIIFMDNLINSSEDVSYLHYCGII 447

Query: 132 LNHLDSDAEVAKLWNGMSKSIKLT-KVPFLDKVIEDVNKHYSSRWKVKAAKFVEKYVFGS 191
            + L SD+EVA L+N + + +    K   L ++  DVN++Y+ +W V  A    KY    
Sbjct: 448 EHWLGSDSEVADLFNRLCQEVVFDPKDSHLSRLSGDVNRYYNRKWNVLKATLTHKYFNNP 507

Query: 192 WPLLALLATILLLAMTALQAFCSVYS 215
           W   +  A ++LL +T  Q+F +VY+
Sbjct: 508 WAYFSFSAAVILLLLTLCQSFYAVYA 533

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BLAST of Lsi02G026850 vs. NCBI nr
Match: gi|449436629|ref|XP_004136095.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 2.6e-102
Identity = 201/228 (88.16%), Postives = 208/228 (91.23%), Query Frame = 1


Query: 1   MKPLECLFSLRKGEEENDLEKGSSRKV-KVKPPLLEEITIPSVSELTKSGVCFLPIDGGV 60
           MKPL  L SLRKGEEENDLEKGSS KV K+K PL EEI IPSVS+LTKSGV F  IDGGV
Sbjct: 346 MKPLNHLCSLRKGEEENDLEKGSSWKVGKIKLPLSEEIAIPSVSQLTKSGVHFSAIDGGV 405

Query: 61  SAVAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEED 120
           SAVAFD KAVIFYLP +NLDVNSEVVLRNLVAYEASK SGPLVFTRFIELMNGIIDSEED
Sbjct: 406 SAVAFDPKAVIFYLPTINLDVNSEVVLRNLVAYEASKASGPLVFTRFIELMNGIIDSEED 465

Query: 121 VKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAK 180
           VKLLK+KGIILNHL SDAEVA LWNGMSKSIKLTKVPFLDKVIEDVNK+YS RWKVKA+K
Sbjct: 466 VKLLKEKGIILNHLKSDAEVADLWNGMSKSIKLTKVPFLDKVIEDVNKYYSGRWKVKASK 525

Query: 181 FVEKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNTDGT 228
           FV+KYVFGSWPLLA LATILLLAMTALQAFCSVYSCSRFFH LN DGT
Sbjct: 526 FVKKYVFGSWPLLAFLATILLLAMTALQAFCSVYSCSRFFHHLNADGT 573

[Close]

BLAST of Lsi02G026850 vs. NCBI nr
Match: gi|778728992|ref|XP_011659516.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 5.7e-102
Identity = 201/229 (87.77%), Postives = 213/229 (93.01%), Query Frame = 1


Query: 1   MKPLECLFSLRKGEEENDLEKG-SSRKV-KVKPPLLEEITIPSVSELTKSGVCFLPIDGG 60
           MKPLE +FSL+KGEEEND EKG SSRK  K++ PLLEEITIPSVSELTKSGV FLPI GG
Sbjct: 347 MKPLEYIFSLKKGEEENDPEKGGSSRKDGKIRLPLLEEITIPSVSELTKSGVLFLPIGGG 406

Query: 61  VSAVAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEE 120
           VSA+AFDSKAVIF LP + LDVNSEVVLRNLVAYEASK SGPLVFTRFIELMNGIIDSEE
Sbjct: 407 VSAIAFDSKAVIFNLPTIKLDVNSEVVLRNLVAYEASKSSGPLVFTRFIELMNGIIDSEE 466

Query: 121 DVKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAA 180
           DVKLL++KGIILNHL SDAEVA+LWNGMSKSIKLTKVPFLDKVIEDVNKHYS+RWKVKAA
Sbjct: 467 DVKLLREKGIILNHLKSDAEVAELWNGMSKSIKLTKVPFLDKVIEDVNKHYSNRWKVKAA 526

Query: 181 KFVEKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNTDGT 228
           KFVEKYVFGSWPLLALLATILLLAM ALQAFCSVYSCSRFF+ L+T GT
Sbjct: 527 KFVEKYVFGSWPLLALLATILLLAMNALQAFCSVYSCSRFFNHLSTAGT 575

[Close]

BLAST of Lsi02G026850 vs. NCBI nr
Match: gi|659122461|ref|XP_008461157.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 374.0 bits (959), Expect = 1.8e-100
Identity = 197/228 (86.40%), Postives = 206/228 (90.35%), Query Frame = 1


Query: 1   MKPLECLFSLRKGEEENDLEKGSSRKV-KVKPPLLEEITIPSVSELTKSGVCFLPIDGGV 60
           MKPL  L SLRKGEEEND+EKGSS KV K+K PL EEI IPSVS+LTKSGV F  IDGGV
Sbjct: 347 MKPLSHLCSLRKGEEENDIEKGSSWKVGKIKLPLSEEIAIPSVSQLTKSGVHFSSIDGGV 406

Query: 61  SAVAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEED 120
           SAVAFD  AVIFYLP +NLDVNSEVVLRNLVAYEASK SGPLVFTRFIELMNGIIDSEED
Sbjct: 407 SAVAFDPNAVIFYLPTINLDVNSEVVLRNLVAYEASKASGPLVFTRFIELMNGIIDSEED 466

Query: 121 VKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAK 180
           V+LLK+KGIILNHL SDAEVA LWNGMSKSIKLTKVPFLDKVIEDVNK+YS RWKVKAAK
Sbjct: 467 VRLLKEKGIILNHLKSDAEVADLWNGMSKSIKLTKVPFLDKVIEDVNKYYSGRWKVKAAK 526

Query: 181 FVEKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNTDGT 228
           FV+KYVFGSWPLLA LATILLLA+TALQAFCSVYSCSRF H LN DGT
Sbjct: 527 FVKKYVFGSWPLLAFLATILLLALTALQAFCSVYSCSRFIHHLNADGT 574

[Close]

BLAST of Lsi02G026850 vs. NCBI nr
Match: gi|659122455|ref|XP_008461154.1| (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 373.2 bits (957), Expect = 3.1e-100
Identity = 201/229 (87.77%), Postives = 210/229 (91.70%), Query Frame = 1


Query: 1   MKPLECLFSLRKGEEENDLEKG-SSRKVKV-KPPLLEEITIPSVSELTKSGVCFLPIDGG 60
           MKPLE +FSLRK EEE D EKG SSRK  + K PLLEEITIPSVSELTKSGV FLPI+GG
Sbjct: 347 MKPLEYIFSLRKVEEEKDPEKGGSSRKDGITKLPLLEEITIPSVSELTKSGVHFLPINGG 406

Query: 61  VSAVAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEE 120
           VSA+AFDSKAVIF LP + LDVNSEVVLRNLVAYEASK SGPLVFTRFIELMNGIIDSEE
Sbjct: 407 VSAIAFDSKAVIFNLPTIKLDVNSEVVLRNLVAYEASKSSGPLVFTRFIELMNGIIDSEE 466

Query: 121 DVKLLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAA 180
           DVKLLK+KGIILNHL SDAEVA++WNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAA
Sbjct: 467 DVKLLKEKGIILNHLKSDAEVAEVWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAA 526

Query: 181 KFVEKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNTDGT 228
           KFVEKYVFGSWPLLALLATILLLAM ALQAFCSVYSCSRFF  L+T GT
Sbjct: 527 KFVEKYVFGSWPLLALLATILLLAMNALQAFCSVYSCSRFFDHLSTAGT 575

[Close]

BLAST of Lsi02G026850 vs. NCBI nr
Match: gi|645245147|ref|XP_008228743.1| (PREDICTED: putative UPF0481 protein At3g02645 isoform X1 [Prunus mume])

HSP 1 Score: 295.0 bits (754), Expect = 1.1e-76
Identity = 148/223 (66.37%), Postives = 176/223 (78.92%), Query Frame = 1


Query: 2   KPLECLFSLRKGEEENDLEKGSSRKVKVKPPLLEEITIPSVSELTKSGVCFLPIDGGVSA 61
           +P+  LFS +  EE N   + SS  +  KPPL+EEITIPSVS+L KSGVCF+   G +S 
Sbjct: 339 QPVSYLFSTQDKEETNPENENSSNSIS-KPPLIEEITIPSVSDLVKSGVCFVKTKGSLST 398

Query: 62  VAFDSKAVIFYLPIVNLDVNSEVVLRNLVAYEASKPSGPLVFTRFIELMNGIIDSEEDVK 121
           ++FD K V FYLP  +LDVN+EV+LRNLVAYE S  SGPLVFTR+ ELMNGIID+EEDVK
Sbjct: 399 ISFDPKTVTFYLPATSLDVNTEVILRNLVAYEVSNASGPLVFTRYTELMNGIIDTEEDVK 458

Query: 122 LLKKKGIILNHLDSDAEVAKLWNGMSKSIKLTKVPFLDKVIEDVNKHYSSRWKVKAAKFV 181
           LL++KGIILNHL SD EVA +WNGMSKSI+LTKVPFLDK IEDVNK+Y+ RWK+K  KF+
Sbjct: 459 LLREKGIILNHLKSDEEVANVWNGMSKSIRLTKVPFLDKTIEDVNKYYNGRWKIKMTKFM 518

Query: 182 EKYVFGSWPLLALLATILLLAMTALQAFCSVYSCSRFFHDLNT 225
           + YVFGSW  LA+LA +LLL +  LQAFCSVYSCSR FH   T
Sbjct: 519 KVYVFGSWQFLAVLAGLLLLLLMTLQAFCSVYSCSRVFHITTT 560

The following BLAST results are available for this feature:

BLAST of Lsi02G026850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3264_ARATH	7.5e-62	57.42	Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=...	[more]

BLAST of Lsi02G026850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8N9_CUCSA	1.8e-102	88.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432200 PE=4 SV=1	[more]
M5WZH6_PRUPE	4.6e-74	65.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026580mg PE=4 SV=1	[more]
F6HNY3_VITVI	3.9e-73	64.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01170 PE=4 SV=...	[more]
W9RBW3_9ROSA	1.1e-72	63.39	Uncharacterized protein OS=Morus notabilis GN=L484_025683 PE=4 SV=1	[more]
B9HN24_POPTR	1.5e-72	64.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08870g PE=4 SV=1	[more]

BLAST of Lsi02G026850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02645.1	4.3e-63	57.42	Plant protein of unknown function (DUF247)	[more]
AT3G50150.1	7.4e-15	31.28	Plant protein of unknown function (DUF247)	[more]
AT3G50120.1	2.8e-14	32.19	Plant protein of unknown function (DUF247)	[more]
AT3G50160.1	2.8e-14	29.44	Plant protein of unknown function (DUF247)	[more]
AT3G50170.1	3.7e-14	32.88	Plant protein of unknown function (DUF247)	[more]

BLAST of Lsi02G026850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436629\|ref\|XP_004136095.1\|	2.6e-102	88.16	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis sativus]	[more]
gi\|778728992\|ref\|XP_011659516.1\|	5.7e-102	87.77	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis sativus]	[more]
gi\|659122461\|ref\|XP_008461157.1\|	1.8e-100	86.40	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]	[more]
gi\|659122455\|ref\|XP_008461154.1\|	3.1e-100	87.77	PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]	[more]
gi\|645245147\|ref\|XP_008228743.1\|	1.1e-76	66.37	PREDICTED: putative UPF0481 protein At3g02645 isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026850.1	Lsi02G026850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 37..203 score: 7.3
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 4..224 score: 1.4E
None	No IPR available	PANTHER	PTHR31549:SF23	SUBFAMILY NOT NAMED	coord: 4..224 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G026850	CmaCh08G006040	Cucurbita maxima (Rimu)	cmalsiB822
Lsi02G026850	Cla97C08G156510	Watermelon (97103) v2	lsiwmbB207
Lsi02G026850	Cp4.1LG11g03470	Cucurbita pepo (Zucchini)	cpelsiB083

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G026850	Bottle gourd (USVL1VR-Ls)	lsilsiB052
Lsi02G026850	Bottle gourd (USVL1VR-Ls)	lsilsiB117
Lsi02G026850	Bottle gourd (USVL1VR-Ls)	lsilsiB123
Lsi02G026850	Cucumber (Gy14) v1	cgylsiB109
Lsi02G026850	Cucumber (Gy14) v1	cgylsiB133
Lsi02G026850	Cucumber (Gy14) v1	cgylsiB206
Lsi02G026850	Cucurbita maxima (Rimu)	cmalsiB238
Lsi02G026850	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G026850	Cucurbita maxima (Rimu)	cmalsiB418
Lsi02G026850	Cucurbita maxima (Rimu)	cmalsiB721
Lsi02G026850	Cucurbita moschata (Rifu)	cmolsiB225
Lsi02G026850	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G026850	Cucurbita moschata (Rifu)	cmolsiB712
Lsi02G026850	Cucurbita moschata (Rifu)	cmolsiB809
Lsi02G026850	Cucurbita pepo (Zucchini)	cpelsiB082
Lsi02G026850	Cucurbita pepo (Zucchini)	cpelsiB113
Lsi02G026850	Cucurbita pepo (Zucchini)	cpelsiB262
Lsi02G026850	Cucurbita pepo (Zucchini)	cpelsiB442
Lsi02G026850	Cucurbita pepo (Zucchini)	cpelsiB499
Lsi02G026850	Wild cucumber (PI 183967)	cpilsiB111
Lsi02G026850	Wild cucumber (PI 183967)	cpilsiB268
Lsi02G026850	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G026850	Cucumber (Chinese Long) v2	culsiB113
Lsi02G026850	Cucumber (Chinese Long) v2	culsiB268
Lsi02G026850	Cucumber (Chinese Long) v2	culsiB503
Lsi02G026850	Melon (DHL92) v3.5.1	lsimeB185
Lsi02G026850	Melon (DHL92) v3.5.1	lsimeB223
Lsi02G026850	Watermelon (Charleston Gray)	lsiwcgB160
Lsi02G026850	Watermelon (Charleston Gray)	lsiwcgB168
Lsi02G026850	Watermelon (Charleston Gray)	lsiwcgB196
Lsi02G026850	Watermelon (97103) v1	lsiwmB176
Lsi02G026850	Watermelon (97103) v1	lsiwmB191
Lsi02G026850	Watermelon (97103) v1	lsiwmB218
Lsi02G026850	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G026850	Melon (DHL92) v3.6.1	lsimedB194
Lsi02G026850	Melon (DHL92) v3.6.1	lsimedB219
Lsi02G026850	Melon (DHL92) v3.6.1	lsimedB234
Lsi02G026850	Silver-seed gourd	carlsiB106
Lsi02G026850	Silver-seed gourd	carlsiB130
Lsi02G026850	Silver-seed gourd	carlsiB516
Lsi02G026850	Silver-seed gourd	carlsiB937
Lsi02G026850	Cucumber (Chinese Long) v3	cuclsiB288
Lsi02G026850	Cucumber (Chinese Long) v3	cuclsiB289
Lsi02G026850	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G026850	Watermelon (97103) v2	lsiwmbB189
Lsi02G026850	Watermelon (97103) v2	lsiwmbB213
Lsi02G026850	Wax gourd	lsiwgoB279