Lsi02G025690 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi02G025690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCarotenoid cleavage dioxygenase 1
Locationchr02 : 32158962 .. 32159270 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGGAGAAGCAGAAGCTCAACGGCGGAGTCGCCGGACGATCCTTGGTGGAGGTGAATCCGAAGCCGAGTAAAGGGCTCACATCGAAGGCCACCGATTTGTTGGAGAAGCTGTTTGTCAAGCTTATGTATGATTCTTCAAGGCCTCAGCATTATCTTTCCGGTAATTTCGCTCCGGTTCACGATGAGACTCCTCCCATTACCGATCTTCCTGTTAAAGGTTATCTTCCGGTGAGTTGTAATCTGCTTTCTGATCTGGTGTTTGTTTATTCAGAACTGTTGCTTAATGAATTCAACTGGGTTTAG

mRNA sequence

ATGGCGGAGGAGAAGCAGAAGCTCAACGGCGGAGTCGCCGGACGATCCTTGGTGGAGGTGAATCCGAAGCCGAGTAAAGGGCTCACATCGAAGGCCACCGATTTGTTGGAGAAGCTGTTTGTCAAGCTTATGTATGATTCTTCAAGGCCTCAGCATTATCTTTCCGGTAATTTCGCTCCGGTTCACGATGAGACTCCTCCCATTACCGATCTTCCTGTTAAAGGTTATCTTCCGGTGAGTTGTAATCTGCTTTCTGATCTGGTGTTTGTTTATTCAGAACTGTTGCTTAATGAATTCAACTGGGTTTAG

Coding sequence (CDS)

ATGGCGGAGGAGAAGCAGAAGCTCAACGGCGGAGTCGCCGGACGATCCTTGGTGGAGGTGAATCCGAAGCCGAGTAAAGGGCTCACATCGAAGGCCACCGATTTGTTGGAGAAGCTGTTTGTCAAGCTTATGTATGATTCTTCAAGGCCTCAGCATTATCTTTCCGGTAATTTCGCTCCGGTTCACGATGAGACTCCTCCCATTACCGATCTTCCTGTTAAAGGTTATCTTCCGGTGAGTTGTAATCTGCTTTCTGATCTGGTGTTTGTTTATTCAGAACTGTTGCTTAATGAATTCAACTGGGTTTAG

Protein sequence

MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGYLPVSCNLLSDLVFVYSELLLNEFNWV
BLAST of Lsi02G025690 vs. Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1

Query: 14 GRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPV 73
          G S++ V+P+PSKG +SK  DLLE+L VKLM+D+S P HYLSGNFAP+ DETPP+ DLPV
Sbjct: 8  GSSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPV 67

Query: 74 KGYLPVSCN 83
           G+LP   N
Sbjct: 68 HGFLPECLN 76

BLAST of Lsi02G025690 vs. Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.2e-20
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1

Query: 17 LVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVKGY 76
          ++EV PKPS G TSKA DLLEK+ VKL YDSS P H+LSGNFAPV DETPP+ DL V+G+
Sbjct: 11 ILEVEPKPSNGFTSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGH 70

Query: 77 LPVSCN 83
          LP   N
Sbjct: 71 LPDCLN 76

BLAST of Lsi02G025690 vs. Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-19
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 1

Query: 15 RSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPVK 74
          RS+V VNP+PSKGL S A DL+EK  V L +D S+P HYLSGNFAPV DETPP  DLPV+
Sbjct: 13 RSIVAVNPQPSKGLVSSAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVR 72

Query: 75 GYLPVSCN 83
          G+LP   N
Sbjct: 73 GHLPECLN 80

BLAST of Lsi02G025690 vs. Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-18
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1

Query: 7  KLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETP 66
          K NG   G  LV+V+PKP+ G +SK  DLLEKL VK +YDSS P HYL+GNF PV  ETP
Sbjct: 6  KKNGAEGG--LVKVDPKPTNGFSSKVIDLLEKLLVKFLYDSSLPHHYLTGNFGPV-TETP 65

Query: 67 PITDLPVKGYLPVSCN 83
          P  DLPVKG+LP   N
Sbjct: 66 PTKDLPVKGHLPDCLN 78

BLAST of Lsi02G025690 vs. Swiss-Prot
Match: CCD1_ONCHC (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar GN=CCD1 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.7e-17
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1

Query: 4  EKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHD 63
          E++  +G  + RS+V V PKP KG+ S   DL+EK+ V   +DSS+P HYL+GNFAPV D
Sbjct: 19 EEEAADGKKSHRSVVAVQPKPRKGILSSTIDLIEKVIVYFAHDSSKPLHYLTGNFAPVRD 78

Query: 64 ETPPITDLPVKGYLPVSCN 83
          ETPP   L V G LPV  N
Sbjct: 79 ETPPFAALTVHGSLPVCLN 97

BLAST of Lsi02G025690 vs. TrEMBL
Match: K4K0F3_MOMCH (Carotenoid cleavage dioxygenase 1 OS=Momordica charantia GN=CCD1 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.3e-33
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 1

Query: 1  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAP 60
          MAEEKQKLNGGV  RSLVEVNPKPSKGL SKATDLLEKLFVKLMYD+S PQHYLSGNFAP
Sbjct: 1  MAEEKQKLNGGVVDRSLVEVNPKPSKGLASKATDLLEKLFVKLMYDASNPQHYLSGNFAP 60

Query: 61 VHDETPPITDLPVKGYLPVSCN 83
          V DETPPITDLPVKGYLP   N
Sbjct: 61 VRDETPPITDLPVKGYLPECLN 82

BLAST of Lsi02G025690 vs. TrEMBL
Match: A0A0A0K8B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428120 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-32
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1

Query: 1  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAP 60
          MA++KQKLNGG+AGRSLVEV P PS GL SKATDLLEKLFVKLM+DSS+PQHYLSGNFAP
Sbjct: 1  MADQKQKLNGGLAGRSLVEVTPNPSNGLLSKATDLLEKLFVKLMFDSSKPQHYLSGNFAP 60

Query: 61 VHDETPPITDLPVKGYLPVSCN 83
          VHDETPPITDLPVKGYLP   N
Sbjct: 61 VHDETPPITDLPVKGYLPECLN 82

BLAST of Lsi02G025690 vs. TrEMBL
Match: Q0H394_CUCME (Carotenoid cleavage dioxygenase (Fragment) OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-32
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 1

Query: 5  KQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDE 64
          KQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDE
Sbjct: 1  KQKLNGGLPGRSLVEVSPKPSKGLVSKATDLLEKLFVKLMYDSSKPQHYLSGNFAPVHDE 60

Query: 65 TPPITDLPVKGYLPVSCN 83
          TPPITDLPVKGYLP   N
Sbjct: 61 TPPITDLPVKGYLPECLN 78

BLAST of Lsi02G025690 vs. TrEMBL
Match: A4URT6_9ROSI (9-cis-epoxycarotenoid dioxygenase OS=Castanea mollissima GN=NCED PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 1

Query: 1  MAEEKQKLNGGV-AGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFA 60
          MAEEKQKL+GG  AG  +V V+PKP+ GLTSK  D +EKL VKLMYDSS P HYLSGNFA
Sbjct: 1  MAEEKQKLSGGGGAGGGIVAVDPKPNNGLTSKVIDFVEKLIVKLMYDSSLPHHYLSGNFA 60

Query: 61 PVHDETPPITDLPVKGYLPVSCN 83
          PV +ETPP TDL VKG+LP   N
Sbjct: 61 PVREETPPTTDLLVKGHLPDCLN 83

BLAST of Lsi02G025690 vs. TrEMBL
Match: U5G3N5_POPTR (Carotenoid cleavage dioxygenase 1 family protein OS=Populus trichocarpa GN=POPTR_0009s06530g PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1

Query: 3  EEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVH 62
          E+KQ++  G AG ++VEVNPKP KGLTSK  D LEKL VKLMYD+S+  HYLSGNFAPV 
Sbjct: 8  EKKQEIGVG-AGSTVVEVNPKPQKGLTSKLIDYLEKLIVKLMYDTSQSHHYLSGNFAPVP 67

Query: 63 DETPPITDLPVKGYLPVSCN 83
          DETPP+ DLPVKGYLP   N
Sbjct: 68 DETPPVKDLPVKGYLPDCLN 86

BLAST of Lsi02G025690 vs. TAIR10
Match: AT3G63520.1 (AT3G63520.1 carotenoid cleavage dioxygenase 1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-21
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1

Query: 14 GRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDETPPITDLPV 73
          G S++ V+P+PSKG +SK  DLLE+L VKLM+D+S P HYLSGNFAP+ DETPP+ DLPV
Sbjct: 8  GSSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPV 67

Query: 74 KGYLPVSCN 83
           G+LP   N
Sbjct: 68 HGFLPECLN 76

BLAST of Lsi02G025690 vs. NCBI nr
Match: gi|659122741|ref|XP_008461300.1| (PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-34
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 1

Query: 1  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAP 60
          MA+EKQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAP
Sbjct: 1  MADEKQKLNGGLPGRSLVEVSPKPSKGLVSKATDLLEKLFVKLMYDSSKPQHYLSGNFAP 60

Query: 61 VHDETPPITDLPVKGYLPVSCN 83
          VHDETPPITDLPVKGYLP   N
Sbjct: 61 VHDETPPITDLPVKGYLPECLN 82

BLAST of Lsi02G025690 vs. NCBI nr
Match: gi|408794951|gb|AFU91489.1| (carotenoid cleavage dioxygenase 1 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 3.3e-33
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 1

Query: 1  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAP 60
          MAEEKQKLNGGV  RSLVEVNPKPSKGL SKATDLLEKLFVKLMYD+S PQHYLSGNFAP
Sbjct: 1  MAEEKQKLNGGVVDRSLVEVNPKPSKGLASKATDLLEKLFVKLMYDASNPQHYLSGNFAP 60

Query: 61 VHDETPPITDLPVKGYLPVSCN 83
          V DETPPITDLPVKGYLP   N
Sbjct: 61 VRDETPPITDLPVKGYLPECLN 82

BLAST of Lsi02G025690 vs. NCBI nr
Match: gi|449436307|ref|XP_004135934.1| (PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.6e-32
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1

Query: 1  MAEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAP 60
          MA++KQKLNGG+AGRSLVEV P PS GL SKATDLLEKLFVKLM+DSS+PQHYLSGNFAP
Sbjct: 1  MADQKQKLNGGLAGRSLVEVTPNPSNGLLSKATDLLEKLFVKLMFDSSKPQHYLSGNFAP 60

Query: 61 VHDETPPITDLPVKGYLPVSCN 83
          VHDETPPITDLPVKGYLP   N
Sbjct: 61 VHDETPPITDLPVKGYLPECLN 82

BLAST of Lsi02G025690 vs. NCBI nr
Match: gi|82548252|gb|ABB82946.1| (carotenoid cleavage dioxygenase [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 1

Query: 5  KQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPVHDE 64
          KQKLNGG+ GRSLVEV+PKPSKGL SKATDLLEKLFVKLMYDSS+PQHYLSGNFAPVHDE
Sbjct: 1  KQKLNGGLPGRSLVEVSPKPSKGLVSKATDLLEKLFVKLMYDSSKPQHYLSGNFAPVHDE 60

Query: 65 TPPITDLPVKGYLPVSCN 83
          TPPITDLPVKGYLP   N
Sbjct: 61 TPPITDLPVKGYLPECLN 78

BLAST of Lsi02G025690 vs. NCBI nr
Match: gi|743837238|ref|XP_011025444.1| (PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Populus euphratica])

HSP 1 Score: 114.8 bits (286), Expect = 9.0e-23
Identity = 57/81 (70.37%), Postives = 65/81 (80.25%), Query Frame = 1

Query: 2  AEEKQKLNGGVAGRSLVEVNPKPSKGLTSKATDLLEKLFVKLMYDSSRPQHYLSGNFAPV 61
          AE+KQ++  G AG ++VEVNPKP KGLTSK  D LEKL VKLMYD+S+  HYLSGNFAPV
Sbjct: 7  AEKKQEIGVG-AGSTVVEVNPKPQKGLTSKLIDYLEKLIVKLMYDTSQSHHYLSGNFAPV 66

Query: 62 HDETPPITDLPVKGYLPVSCN 83
           DETPP+ DLPVKGYLP   N
Sbjct: 67 PDETPPVKDLPVKGYLPDCLN 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CCD1_ARATH2.5e-2063.77Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 P... [more]
CCD1_PEA7.2e-2068.18Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=... [more]
CCD_CROSA2.7e-1966.18Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1[more]
CCD1_PHAVU6.7e-1861.84Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=... [more]
CCD1_ONCHC9.7e-1753.16Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar GN=CC... [more]
Match NameE-valueIdentityDescription
K4K0F3_MOMCH2.3e-3389.02Carotenoid cleavage dioxygenase 1 OS=Momordica charantia GN=CCD1 PE=2 SV=1[more]
A0A0A0K8B3_CUCSA1.1e-3285.37Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428120 PE=4 SV=1[more]
Q0H394_CUCME2.0e-3289.74Carotenoid cleavage dioxygenase (Fragment) OS=Cucumis melo PE=2 SV=1[more]
A4URT6_9ROSI1.1e-2269.889-cis-epoxycarotenoid dioxygenase OS=Castanea mollissima GN=NCED PE=2 SV=1[more]
U5G3N5_POPTR1.8e-2270.00Carotenoid cleavage dioxygenase 1 family protein OS=Populus trichocarpa GN=POPTR... [more]
Match NameE-valueIdentityDescription
AT3G63520.11.4e-2163.77 carotenoid cleavage dioxygenase 1[more]
Match NameE-valueIdentityDescription
gi|659122741|ref|XP_008461300.1|3.9e-3489.02PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Cucumis melo][more]
gi|408794951|gb|AFU91489.1|3.3e-3389.02carotenoid cleavage dioxygenase 1 [Momordica charantia][more]
gi|449436307|ref|XP_004135934.1|1.6e-3285.37PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 isoform X1 [Cucumis sa... [more]
gi|82548252|gb|ABB82946.1|2.8e-3289.74carotenoid cleavage dioxygenase [Cucumis melo][more]
gi|743837238|ref|XP_011025444.1|9.0e-2370.37PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Populus euphrati... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Vocabulary: INTERPRO
TermDefinition
IPR004294Carotenoid_Oase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016118 carotenoid catabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016020 membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0005575 cellular_component
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G025690.1Lsi02G025690.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004294Carotenoid oxygenasePANTHERPTHR10543BETA-CAROTENE DIOXYGENASEcoord: 8..78
score: 4.4
NoneNo IPR availablePANTHERPTHR10543:SF37CAROTENOID 9,10(9',10')-CLEAVAGE DIOXYGENASE 1coord: 8..78
score: 4.4

The following gene(s) are paralogous to this gene:

None