Lsi02G024240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G024240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr02 : 30839598 .. 30840029 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCTTCGCAATATTATTGTGTGAAGGTGGGTGCCACATTCAACGATGTCACCGGCATATTCGGTCTCGGTTTCAATCGTCGCTTTTCTTTTCGCCATACCACTGGATCCAGTGGTATCACGACGCTTTCAAACACCGGTGGTAGGAGCGTCGTAGACATTGAGAGCCCTGCACAAGCACCAACAACACCTGAAATTACCCCTGTTGGAGTTGAAACTGATCCAATAGTAAAGATGCGTGAGATGGATGCTTTTGTTTCTAAGGATCATGATACTCATTGGAAGAATGGTGGTGATATTGCTTTTTCTCATGGTGGAATAATTACTCGAAAGACTATAGGTACTAAAACTGATGTAAACAACAATAACAATATTGTTATTATTTCTCGTAGTCTTAAGGTGCCAAGGGCACGTGACCCTCAGCTTTAA

mRNA sequence

ATGCTTGCTTCGCAATATTATTGTGTGAAGGTGGGTGCCACATTCAACGATGTCACCGGCATATTCGGTCTCGGTTTCAATCGTCGCTTTTCTTTTCGCCATACCACTGGATCCAGTGGTATCACGACGCTTTCAAACACCGGTGGTAGGAGCGTCGTAGACATTGAGAGCCCTGCACAAGCACCAACAACACCTGAAATTACCCCTGTTGGAGTTGAAACTGATCCAATAGTAAAGATGCGTGAGATGGATGCTTTTGTTTCTAAGGATCATGATACTCATTGGAAGAATGGTGGTGATATTGCTTTTTCTCATGGTGGAATAATTACTCGAAAGACTATAGGTACTAAAACTGATGTAAACAACAATAACAATATTGTTATTATTTCTCGTAGTCTTAAGGTGCCAAGGGCACGTGACCCTCAGCTTTAA

Coding sequence (CDS)

ATGCTTGCTTCGCAATATTATTGTGTGAAGGTGGGTGCCACATTCAACGATGTCACCGGCATATTCGGTCTCGGTTTCAATCGTCGCTTTTCTTTTCGCCATACCACTGGATCCAGTGGTATCACGACGCTTTCAAACACCGGTGGTAGGAGCGTCGTAGACATTGAGAGCCCTGCACAAGCACCAACAACACCTGAAATTACCCCTGTTGGAGTTGAAACTGATCCAATAGTAAAGATGCGTGAGATGGATGCTTTTGTTTCTAAGGATCATGATACTCATTGGAAGAATGGTGGTGATATTGCTTTTTCTCATGGTGGAATAATTACTCGAAAGACTATAGGTACTAAAACTGATGTAAACAACAATAACAATATTGTTATTATTTCTCGTAGTCTTAAGGTGCCAAGGGCACGTGACCCTCAGCTTTAA

Protein sequence

MLASQYYCVKVGATFNDVTGIFGLGFNRRFSFRHTTGSSGITTLSNTGGRSVVDIESPAQAPTTPEITPVGVETDPIVKMREMDAFVSKDHDTHWKNGGDIAFSHGGIITRKTIGTKTDVNNNNNIVIISRSLKVPRARDPQL

Homology

[Close]

BLAST of Lsi02G024240 vs. TrEMBL
Match: A0A0A0KB06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404790 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 69/125 (55.20%), Postives = 87/125 (69.60%), Query Frame = 1


Query: 8   CVKVGATFNDVTGIFGLGFNRRFSFRHTTGSSGITTLSNTGG---RSVVDIESPAQAPTT 67
           CV VGATF+DVTGI GLG + R+SF +T GS G+   SNTGG    SVVDIESPAQAPT+
Sbjct: 22  CVNVGATFHDVTGILGLGIHHRYSFHNTIGSGGVGLFSNTGGSTASSVVDIESPAQAPTS 81

Query: 68  PEITPVGVETDPIV-KMREMDAFVSKDHDTHWKNGGDIAFSHGGIITRKTIGTKTDVNNN 127
            EI P G+ETDP +    + + F+SKDHD HWK+G +IA SHGG+I   + G K  V + 
Sbjct: 82  -EIAPAGLETDPAINNSHDFEGFISKDHDIHWKSGSNIALSHGGVI---STGGKIGVKSY 141

Query: 128 NNIVI 129
           +N  +
Sbjct: 142 SNFAV 142

[Close]

BLAST of Lsi02G024240 vs. TrEMBL
Match: A0A0A0K5J0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-11
Identity = 53/121 (43.80%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 7   YCVKVGATFNDVTGIFGLGFNRRFSFRHTTGSSGITTLSNTGGRSVVDIESPAQAPTTPE 66
           +CVKV ATFNDVTG+  L  N  FSFR   G   I T  NT G     + + A+APT   
Sbjct: 19  HCVKVDATFNDVTGVVNLDLNHHFSFR-GFGWPRIGT-PNTDGSLASTVNNHAEAPT--G 78

Query: 67  ITPVGVETD------------PIVKMREMDAFVSKDHDTHWKNGGDIAFSHGGIITRKTI 116
           I PVG++T              I+K  E    VSKDH+ + K+GG+IA SHGG I+ K  
Sbjct: 79  IAPVGLDTPINKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGK 135

[Close]

BLAST of Lsi02G024240 vs. TrEMBL
Match: A0A0A0K7W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1


Query: 1   MLASQYYCVKVGATFNDVTGIFGLGFNRRFSFRHTTGSSGITTLSNTGG-RSVVDIESPA 60
           + A +Y C +VGATF+D TG+   G N +FSFR   G   I T    G   S V  +  A
Sbjct: 16  VFAWKYCCAQVGATFSDATGVVNAGLNHQFSFR-AFGWPHIGTPDVDGSITSTVKKQIHA 75

Query: 61  QAPTTPEITPVGVET-------------DPIVKMREMDAFVSKDHDTHWKNGGDIAFSHG 117
           +AP    I PVG+ET             D I +++   A VS DH+++  +G +IAFSHG
Sbjct: 76  EAPA--GIAPVGLETMINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHG 135

[Close]

BLAST of Lsi02G024240 vs. NCBI nr
Match: gi|700189738|gb|KGN44971.1| (hypothetical protein Csa_7G404790 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 3.8e-27
Identity = 69/125 (55.20%), Postives = 87/125 (69.60%), Query Frame = 1


Query: 8   CVKVGATFNDVTGIFGLGFNRRFSFRHTTGSSGITTLSNTGG---RSVVDIESPAQAPTT 67
           CV VGATF+DVTGI GLG + R+SF +T GS G+   SNTGG    SVVDIESPAQAPT+
Sbjct: 22  CVNVGATFHDVTGILGLGIHHRYSFHNTIGSGGVGLFSNTGGSTASSVVDIESPAQAPTS 81

Query: 68  PEITPVGVETDPIV-KMREMDAFVSKDHDTHWKNGGDIAFSHGGIITRKTIGTKTDVNNN 127
            EI P G+ETDP +    + + F+SKDHD HWK+G +IA SHGG+I   + G K  V + 
Sbjct: 82  -EIAPAGLETDPAINNSHDFEGFISKDHDIHWKSGSNIALSHGGVI---STGGKIGVKSY 141

Query: 128 NNIVI 129
           +N  +
Sbjct: 142 SNFAV 142

[Close]

BLAST of Lsi02G024240 vs. NCBI nr
Match: gi|700189732|gb|KGN44965.1| (hypothetical protein Csa_7G398750 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11
Identity = 53/121 (43.80%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 7   YCVKVGATFNDVTGIFGLGFNRRFSFRHTTGSSGITTLSNTGGRSVVDIESPAQAPTTPE 66
           +CVKV ATFNDVTG+  L  N  FSFR   G   I T  NT G     + + A+APT   
Sbjct: 19  HCVKVDATFNDVTGVVNLDLNHHFSFR-GFGWPRIGT-PNTDGSLASTVNNHAEAPT--G 78

Query: 67  ITPVGVETD------------PIVKMREMDAFVSKDHDTHWKNGGDIAFSHGGIITRKTI 116
           I PVG++T              I+K  E    VSKDH+ + K+GG+IA SHGG I+ K  
Sbjct: 79  IAPVGLDTPINKGDKVSTFGLEIIKQIESGVVVSKDHEINLKSGGNIALSHGGKISLKGK 135

[Close]

BLAST of Lsi02G024240 vs. NCBI nr
Match: gi|700189736|gb|KGN44969.1| (hypothetical protein Csa_7G399280 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1


Query: 1   MLASQYYCVKVGATFNDVTGIFGLGFNRRFSFRHTTGSSGITTLSNTGG-RSVVDIESPA 60
           + A +Y C +VGATF+D TG+   G N +FSFR   G   I T    G   S V  +  A
Sbjct: 16  VFAWKYCCAQVGATFSDATGVVNAGLNHQFSFR-AFGWPHIGTPDVDGSITSTVKKQIHA 75

Query: 61  QAPTTPEITPVGVET-------------DPIVKMREMDAFVSKDHDTHWKNGGDIAFSHG 117
           +AP    I PVG+ET             D I +++   A VS DH+++  +G +IAFSHG
Sbjct: 76  EAPA--GIAPVGLETMINKEDKVQSYDLDIIKQIKGGGAVVSHDHESNLNSGENIAFSHG 135

The following BLAST results are available for this feature:

BLAST of Lsi02G024240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G024240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB06_CUCSA	2.7e-27	55.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404790 PE=4 SV=1	[more]
A0A0A0K5J0_CUCSA	5.9e-11	43.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398750 PE=4 SV=1	[more]
A0A0A0K7W7_CUCSA	2.8e-08	37.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G399280 PE=4 SV=1	[more]

BLAST of Lsi02G024240 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi02G024240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189738\|gb\|KGN44971.1\|	3.8e-27	55.20	hypothetical protein Csa_7G404790 [Cucumis sativus]	[more]
gi\|700189732\|gb\|KGN44965.1\|	8.5e-11	43.80	hypothetical protein Csa_7G398750 [Cucumis sativus]	[more]
gi\|700189736\|gb\|KGN44969.1\|	4.0e-08	37.69	hypothetical protein Csa_7G399280 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G024240.1	Lsi02G024240.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G024240	CSPI07G17750	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G024240	Cla015096	Watermelon (97103) v1	lsiwmB175
Lsi02G024240	Cla97C09G168070	Watermelon (97103) v2	lsiwmbB212
Lsi02G024240	CsGy7G016210	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G024240	CsaV3_7G029550	Cucumber (Chinese Long) v3	cuclsiB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G024240	Bottle gourd (USVL1VR-Ls)	lsilsiB091
Lsi02G024240	Cucumber (Gy14) v1	cgylsiB110
Lsi02G024240	Cucumber (Gy14) v1	cgylsiB351
Lsi02G024240	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G024240	Cucurbita maxima (Rimu)	cmalsiB822
Lsi02G024240	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G024240	Cucurbita moschata (Rifu)	cmolsiB809
Lsi02G024240	Cucurbita pepo (Zucchini)	cpelsiB113
Lsi02G024240	Cucurbita pepo (Zucchini)	cpelsiB262
Lsi02G024240	Wild cucumber (PI 183967)	cpilsiB266
Lsi02G024240	Cucumber (Chinese Long) v2	culsiB267
Lsi02G024240	Cucumber (Chinese Long) v2	culsiB503
Lsi02G024240	Melon (DHL92) v3.5.1	lsimeB192
Lsi02G024240	Melon (DHL92) v3.5.1	lsimeB226
Lsi02G024240	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G024240	Watermelon (Charleston Gray)	lsiwcgB162
Lsi02G024240	Watermelon (97103) v1	lsiwmB178
Lsi02G024240	Melon (DHL92) v3.6.1	lsimedB201
Lsi02G024240	Silver-seed gourd	carlsiB098
Lsi02G024240	Silver-seed gourd	carlsiB511
Lsi02G024240	Cucumber (Chinese Long) v3	cuclsiB287
Lsi02G024240	Watermelon (97103) v2	lsiwmbB162
Lsi02G024240	Watermelon (97103) v2	lsiwmbB188
Lsi02G024240	Watermelon (97103) v2	lsiwmbB211
Lsi02G024240	Wax gourd	lsiwgoB202
Lsi02G024240	Wax gourd	lsiwgoB218
Lsi02G024240	Wax gourd	lsiwgoB271