Lsi02G023150 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G023150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Signal peptidase complex subunit, putative
Location	chr02 : 29748976 .. 29751239 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCTTCTCTCAGTTTTCAAATTCCTTCTACTTTCATTTGTATATTTCTAAATCTTTGTTCGCAGCGCCTACGATTTTCATTATACTTGAATCTTCCTAATCTTTCTTCATTGGGTTGGATCATACGATTTATCTTCTTGTTTTCCATGTTTAAGATGGACTGGCTAGGGCAAAAGCTAGCGGAGCAGCTGATGCAGATTATGTTGGTTGCATTTGCCGTTGTGGGCTTTTCGACTGGCTATGTTATGGGATCATTTCAAATGATGATCTTGGTTTACGCTGCTGCTGTGTTTCTCACCACATTAATCACTGTTCCGAATTGGCCTTTCTTCAATCGCCACCCGCTCAATTGGTTGGATCCTTGTGTGGCTGATAAATACCCTAAGCCGCAACCGCAGGAGCCTGTGGTTTTGAAGAAGAAACCTGCTAAGAAGTAGGTCAGTTTGATTTTTGTTGTTCTTGTATTTAACAACATACAGTTTGAACCATTGAATTTCTAATGTCCCCAAAATGATTTTACATACATACACTTGTTATATGGATTATAATCTTGAAGTTTTAGAGAAATGCAGATCTTTTTTATTGATGCTCTTAGCTATTGCTTTACTTTGGTTTCGACTTGTGGGTTCTGTGGAAAGAGAACCCTTGTGTTTTTTCTGTTCTATGGTTAAAAATAGATTAAATCATAGTAAACATGTCTATATTGTCATAATTATAAGTTATTACTTGCTTGCTGCTGTTCCCGGGTTATCCAGGCTTCTTTTGGTAGCCATTTGGTTTTTTATTTTTGAAAATTAAGTCTATTTTCTATCAATTTCTTACAATGATTTTGTTGAATTCTTGGCTAAATTCCAAAGACAAAAACTACTTTTTTTAGTTATCAAAACTTGGACTGATTTTTAAAAACATTGGTAAAAAGTAGATAACAAAGCAAGAAATTTGGAGGTGGAAGGGGTGTTCATAGGCTTAATTTTCAAAAACTACAAACTAAACAGTTACCAAACGAAGCCTTGATTTTTTGTTTTTGAAAATTAAGCCTATTTCCTCTCAATTTCTTACAAAGCTTTGCATCGATCTTACATAAAATGGCTGAATTCATAGCCAAATACCAAAAACAAAAACAAGTTTTTAAAAACTACTTCAAAATTTGGTTTGGTTTTTTTTATACATTGGTAAAAGTAGATAATAATGAAGAAATTTAGAGCAAGTATTTATAGGCTTAATTTTTAAAAGCTAAAAATCAAAAACTAAATTGTTACCAAGGGGCCTAAATGTTTTTTTATTACTATAATATACATTTGAAGAGCATTTTGAAAGTAAACTGAATTAATTCATACATAGGATGAATATTGCCTCTACAGATTGTCATCTGCACACCATAATATCTAGGAAGGCATTTCAAGTTACATTTTTCGTACACTCTATGCTATTTCTAAAGATTACTTATTATGGGTTAGTGTTGTCAAAGCATTACTTTTGGAGATTTGGATGGAAAGAAACCATCGTACATTTCAGAGTGCTTCTCAATGTTCTTACTCTATTTATGACTCGGCTTGTCTAAAGCCTTATTCATGTTGCTTCCTCTAAAAAAAAGTTTGAAGGTTTCTGGATTCAAGATATCTCTTGCAATTAGTTGGCTTTCATTTCTCCTTCATAATTGTGTTATCCTTTTAAGTTTTGTTGATGTTCTGAGTTTCTTGTTTTGTTTTAAGTACTTTTTGTATCTCTGAGCACCTTATTGGAAAGTTTTGTATCCTTTCCTTTAAAATTTGATTAGGAATTCAAGTATTCGATTGAGTTTTTGTAGAATAGTAGAGTGGTTAGGACAACGTCGTTTTGTAGTAGTGTTATGATAGTTAAGTTTGATATTGGCAGATTGAGATAATTGTCCCCCTTTTTTTTTTAATGGAAGAGGAAATATTTCATAAACCAACAACAGGACGAGAGACCACAACCTCAGAAATAACTGAGGAAAATCACCTTGGCACAAAAGGAAACTGCCCTCCATCTTCTTTAGAGAGGTCGTCGAATGAGGCTGCTCATCGCCTTGCTCCAGGCGACAATGGAGTTTGAGAATTTTGTGTTTGATTTTGGTTGTAATGGTTTTTTTTCCCTTGGTTTTCAATGTAGGCTAAAAGAAAACATTTCAATTGATTCTAGAGCATGAAATTAGACTATAGATCCTTTCCTTTTGATTAGTTAATCCTTACCAATGATGGGATTCATTCTTCTTTTATATATATATATGTGCGCGCGCTTCAC

mRNA sequence

CTCTCCTTCTCTCAGTTTTCAAATTCCTTCTACTTTCATTTGTATATTTCTAAATCTTTGTTCGCAGCGCCTACGATTTTCATTATACTTGAATCTTCCTAATCTTTCTTCATTGGGTTGGATCATACGATTTATCTTCTTGTTTTCCATGTTTAAGATGGACTGGCTAGGGCAAAAGCTAGCGGAGCAGCTGATGCAGATTATGTTGGTTGCATTTGCCGTTGTGGGCTTTTCGACTGGCTATGTTATGGGATCATTTCAAATGATGATCTTGGTTTACGCTGCTGCTGTGTTTCTCACCACATTAATCACTGTTCCGAATTGGCCTTTCTTCAATCGCCACCCGCTCAATTGGTTGGATCCTTGTGTGGCTGATAAATACCCTAAGCCGCAACCGCAGGAGCCTGTGGTTTTGAAGAAGAAACCTGCTAAGAAGTAGATTGAGATAATTGTCCCCCTTTTTTTTTTAATGGAAGAGGAAATATTTCATAAACCAACAACAGGACGAGAGACCACAACCTCAGAAATAACTGAGGAAAATCACCTTGGCACAAAAGGAAACTGCCCTCCATCTTCTTTAGAGAGGTCGTCGAATGAGGCTGCTCATCGCCTTGCTCCAGGCGACAATGGAGTTTGAGAATTTTGTGTTTGATTTTGGTTGTAATGGTTTTTTTTCCCTTGGTTTTCAATGTAGGCTAAAAGAAAACATTTCAATTGATTCTAGAGCATGAAATTAGACTATAGATCCTTTCCTTTTGATTAGTTAATCCTTACCAATGATGGGATTCATTCTTCTTTTATATATATATATGTGCGCGCGCTTCAC

Coding sequence (CDS)

ATGTTTAAGATGGACTGGCTAGGGCAAAAGCTAGCGGAGCAGCTGATGCAGATTATGTTGGTTGCATTTGCCGTTGTGGGCTTTTCGACTGGCTATGTTATGGGATCATTTCAAATGATGATCTTGGTTTACGCTGCTGCTGTGTTTCTCACCACATTAATCACTGTTCCGAATTGGCCTTTCTTCAATCGCCACCCGCTCAATTGGTTGGATCCTTGTGTGGCTGATAAATACCCTAAGCCGCAACCGCAGGAGCCTGTGGTTTTGAAGAAGAAACCTGCTAAGAAGTAG

Protein sequence

MFKMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFNRHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK

Homology

[Close]

BLAST of Lsi02G023150 vs. Swiss-Prot
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-23
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKL EQLMQI+LV   VV    GY   SF+ M+L+YA  V LTTL+TVPNWPF+N
Sbjct: 1  MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
           HPL WLDP  A+K+PKP+    V  KKK +KK
Sbjct: 61 LHPLKWLDPSEAEKHPKPEVVS-VASKKKFSKK 92

[Close]

BLAST of Lsi02G023150 vs. Swiss-Prot
Match: SPCS1_PIG (Signal peptidase complex subunit 1 OS=Sus scrofa GN=SPCS1 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-10
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 3  KMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFF 62
          +MD+ GQKLAEQ+ Q +++  A+VGF  GYV   F   + +  A    + L+T+P WP +
Sbjct: 11 QMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIY 70

Query: 63 NRHPLNWL---DPCVADKYP 80
           RHPL WL   D    DK P
Sbjct: 71 RRHPLKWLPVQDSGTEDKKP 90

[Close]

BLAST of Lsi02G023150 vs. Swiss-Prot
Match: SPCS1_BOVIN (Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-10
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 3  KMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFF 62
          +MD+ GQKLAEQ+ Q +++  A+VGF  GY+   F   + +  A    + L+T+P WP +
Sbjct: 11 QMDYKGQKLAEQMFQGIILFSAIVGFIYGYLAEQFGWTVYIVMAGFAFSCLLTLPPWPIY 70

Query: 63 NRHPLNWL---DPCVADKYP 80
           RHPL WL   D    DK P
Sbjct: 71 RRHPLKWLPVQDSSTEDKKP 90

[Close]

BLAST of Lsi02G023150 vs. Swiss-Prot
Match: SPCS1_HUMAN (Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4)

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-10
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 3  KMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFF 62
          +MD+ GQKLAEQ+ Q +++  A+VGF  GYV   F   + +  A    + L+T+P WP +
Sbjct: 11 QMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIY 70

Query: 63 NRHPLNWL 71
           RHPL WL
Sbjct: 71 RRHPLKWL 78

[Close]

BLAST of Lsi02G023150 vs. Swiss-Prot
Match: SPCS1_MOUSE (Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-10
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1


Query: 3   KMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFF 62
           +MD+ GQKLAEQ+ Q +++  A+VGF  GYV   F   + +  A    + L+T+P WP +
Sbjct: 70  QMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIY 129

Query: 63  NRHPLNWL 71
            RHPL WL
Sbjct: 130 RRHPLKWL 137

[Close]

BLAST of Lsi02G023150 vs. TrEMBL
Match: A0A0A0KS09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589960 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.8e-38
Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 4   MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
           MDW GQKLAEQLMQ+MLVAFAVV F TGYVMGSF++MILVYA  VFLTTLITVPNWPFFN
Sbjct: 111 MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 170

Query: 64  RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
           RHPL WLDP +A+KYPKPQPQEPVVLKKKPAKK
Sbjct: 171 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 203

[Close]

BLAST of Lsi02G023150 vs. TrEMBL
Match: W9S0F4_9ROSA (60S ribosomal protein L17-2 OS=Morus notabilis GN=L484_005471 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1


Query: 3   KMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFF 62
           KMDW GQKLAEQLMQIML+AFAVVGF+TGYV+GSFQ M+L+YA  V LTTLIT+PNWPFF
Sbjct: 221 KMDWQGQKLAEQLMQIMLLAFAVVGFATGYVLGSFQTMVLIYAGGVVLTTLITIPNWPFF 280

Query: 63  NRHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
           NRHPL WLDP  A+K+PKPQ Q+PV  KKK +KK
Sbjct: 281 NRHPLKWLDPSEAEKHPKPQRQQPVTSKKKSSKK 314

[Close]

BLAST of Lsi02G023150 vs. TrEMBL
Match: A0A151SDV7_CAJCA (Putative signal peptidase complex subunit 1 OS=Cajanus cajan GN=KK1_025156 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-31
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKLAEQLMQIML++FAV+ F++GYVM SFQMMIL+YAA V LTTL+TVPNWPFFN
Sbjct: 1  MDWQGQKLAEQLMQIMLLSFAVIAFASGYVMASFQMMILIYAAGVVLTTLLTVPNWPFFN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
          RHPL WLDP   +K+PKPQP   V  KKKP KK
Sbjct: 61 RHPLTWLDPSEVEKHPKPQPSANVTQKKKPVKK 93

[Close]

BLAST of Lsi02G023150 vs. TrEMBL
Match: A0A0S3R184_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G202900 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.5e-31
Identity = 68/93 (73.12%), Postives = 77/93 (82.80%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKLAEQ+MQIML+AFAV+ F++GYVM SFQMMIL+YA  V  TTL+TVPNWPFFN
Sbjct: 1  MDWQGQKLAEQMMQIMLLAFAVIAFASGYVMASFQMMILIYAGGVVFTTLLTVPNWPFFN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
          RHPL WLDP  A+K+PKPQP   V  KKKP KK
Sbjct: 61 RHPLIWLDPSAAEKHPKPQPSANVTQKKKPVKK 93

[Close]

BLAST of Lsi02G023150 vs. TrEMBL
Match: A0A166E6S7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007008 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-30
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKLAEQLMQI+LVAFAVV F TGYV+GSFQMM+L+YA  V LTTLITVPNWPFFN
Sbjct: 1  MDWQGQKLAEQLMQIILVAFAVVAFFTGYVLGSFQMMLLIYAGGVVLTTLITVPNWPFFN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAK 96
          RHPL WLDP VA+K+PKPQ       KKK +K
Sbjct: 61 RHPLKWLDPSVAEKHPKPQAAAATTSKKKGSK 92

[Close]

BLAST of Lsi02G023150 vs. TAIR10
Match: AT4G40042.1 (AT4G40042.1 Microsomal signal peptidase 12 kDa subunit (SPC12))

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-25
Identity = 58/93 (62.37%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKLAEQLMQI+L+  AVV F  GY   SF+MM+L+YA  V LTTLIT+PNWP FN
Sbjct: 1  MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
          RH L WLDP  A+K+PKPQ       KK  +KK
Sbjct: 61 RHHLKWLDPSEAEKHPKPQVVVVSSKKKSSSKK 93

[Close]

BLAST of Lsi02G023150 vs. TAIR10
Match: AT2G22425.1 (AT2G22425.1 Microsomal signal peptidase 12 kDa subunit (SPC12))

HSP 1 Score: 107.5 bits (267), Expect = 4.8e-24
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKL EQLMQI+LV   VV    GY   SF+ M+L+YA  V LTTL+TVPNWPF+N
Sbjct: 1  MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
           HPL WLDP  A+K+PKP+    V  KKK +KK
Sbjct: 61 LHPLKWLDPSEAEKHPKPEVVS-VASKKKFSKK 92

[Close]

BLAST of Lsi02G023150 vs. NCBI nr
Match: gi|449435059|ref|XP_004135313.1| (PREDICTED: probable signal peptidase complex subunit 1 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-38
Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKLAEQLMQ+MLVAFAVV F TGYVMGSF++MILVYA  VFLTTLITVPNWPFFN
Sbjct: 1  MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
          RHPL WLDP +A+KYPKPQPQEPVVLKKKPAKK
Sbjct: 61 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 93

[Close]

BLAST of Lsi02G023150 vs. NCBI nr
Match: gi|700196502|gb|KGN51679.1| (hypothetical protein Csa_5G589960 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-38
Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = 1


Query: 4   MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
           MDW GQKLAEQLMQ+MLVAFAVV F TGYVMGSF++MILVYA  VFLTTLITVPNWPFFN
Sbjct: 111 MDWQGQKLAEQLMQLMLVAFAVVAFLTGYVMGSFRLMILVYAGGVFLTTLITVPNWPFFN 170

Query: 64  RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
           RHPL WLDP +A+KYPKPQPQEPVVLKKKPAKK
Sbjct: 171 RHPLKWLDPSLAEKYPKPQPQEPVVLKKKPAKK 203

[Close]

BLAST of Lsi02G023150 vs. NCBI nr
Match: gi|659090490|ref|XP_008446044.1| (PREDICTED: probable signal peptidase complex subunit 1 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 7.2e-38
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 1


Query: 4  MDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFFN 63
          MDW GQKLAEQLMQIMLVAFAVV F TGYVMGSF+MMILVYA  VFLTTLITVPNWPFFN
Sbjct: 1  MDWQGQKLAEQLMQIMLVAFAVVAFLTGYVMGSFRMMILVYAGGVFLTTLITVPNWPFFN 60

Query: 64 RHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
          RHPL WLDP +A+KYPKPQPQEPVV KKKPAKK
Sbjct: 61 RHPLKWLDPSLAEKYPKPQPQEPVVSKKKPAKK 93

[Close]

BLAST of Lsi02G023150 vs. NCBI nr
Match: gi|703135090|ref|XP_010105796.1| (60S ribosomal protein L17-2 [Morus notabilis])

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1


Query: 3   KMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPFF 62
           KMDW GQKLAEQLMQIML+AFAVVGF+TGYV+GSFQ M+L+YA  V LTTLIT+PNWPFF
Sbjct: 221 KMDWQGQKLAEQLMQIMLLAFAVVGFATGYVLGSFQTMVLIYAGGVVLTTLITIPNWPFF 280

Query: 63  NRHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
           NRHPL WLDP  A+K+PKPQ Q+PV  KKK +KK
Sbjct: 281 NRHPLKWLDPSEAEKHPKPQRQQPVTSKKKSSKK 314

[Close]

BLAST of Lsi02G023150 vs. NCBI nr
Match: gi|694419053|ref|XP_009337496.1| (PREDICTED: probable signal peptidase complex subunit 1 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 1


Query: 2   FKMDWLGQKLAEQLMQIMLVAFAVVGFSTGYVMGSFQMMILVYAAAVFLTTLITVPNWPF 61
           FKMDW GQ+LAEQLMQI+L+ FAVVGF+ GY+ GSFQ M L YA  V LTTL+TVPNWPF
Sbjct: 26  FKMDWQGQRLAEQLMQILLLVFAVVGFAAGYITGSFQTMFLTYAGGVVLTTLVTVPNWPF 85

Query: 62  FNRHPLNWLDPCVADKYPKPQPQEPVVLKKKPAKK 97
           FNRHPL WLDP  A+K+PKPQPQ+PV  KKK +KK
Sbjct: 86  FNRHPLKWLDPSEAEKHPKPQPQQPVSSKKKASKK 120

The following BLAST results are available for this feature:

BLAST of Lsi02G023150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SPCS1_ARATH	8.5e-23	60.22	Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425...	[more]
SPCS1_PIG	4.8e-10	42.50	Signal peptidase complex subunit 1 OS=Sus scrofa GN=SPCS1 PE=3 SV=1	[more]
SPCS1_BOVIN	6.3e-10	41.25	Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1	[more]
SPCS1_HUMAN	8.3e-10	44.12	Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4	[more]
SPCS1_MOUSE	8.3e-10	44.12	Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=3	[more]

BLAST of Lsi02G023150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS09_CUCSA	3.8e-38	87.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589960 PE=4 SV=1	[more]
W9S0F4_9ROSA	1.7e-33	76.60	60S ribosomal protein L17-2 OS=Morus notabilis GN=L484_005471 PE=3 SV=1	[more]
A0A151SDV7_CAJCA	1.6e-31	74.19	Putative signal peptidase complex subunit 1 OS=Cajanus cajan GN=KK1_025156 PE=4 ...	[more]
A0A0S3R184_PHAAN	4.5e-31	73.12	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G202900 PE=...	[more]
A0A166E6S7_DAUCA	2.2e-30	75.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007008 PE=4 SV=1	[more]

BLAST of Lsi02G023150 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G40042.1	1.9e-25	62.37	Microsomal signal peptidase 12 kDa subunit (SPC12)	[more]
AT2G22425.1	4.8e-24	60.22	Microsomal signal peptidase 12 kDa subunit (SPC12)	[more]

BLAST of Lsi02G023150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435059\|ref\|XP_004135313.1\|	5.5e-38	87.10	PREDICTED: probable signal peptidase complex subunit 1 [Cucumis sativus]	[more]
gi\|700196502\|gb\|KGN51679.1\|	5.5e-38	87.10	hypothetical protein Csa_5G589960 [Cucumis sativus]	[more]
gi\|659090490\|ref\|XP_008446044.1\|	7.2e-38	88.17	PREDICTED: probable signal peptidase complex subunit 1 [Cucumis melo]	[more]
gi\|703135090\|ref\|XP_010105796.1\|	2.4e-33	76.60	60S ribosomal protein L17-2 [Morus notabilis]	[more]
gi\|694419053\|ref\|XP_009337496.1\|	5.9e-32	72.63	PREDICTED: probable signal peptidase complex subunit 1 isoform X2 [Pyrus x brets...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005787	signal peptidase complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0008233	peptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006465	signal peptide processing

Vocabulary: **INTERPRO**
Term	Definition
IPR009542	SPC12

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045047	protein targeting to ER
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0006412	translation
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005787	signal peptidase complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023150.1	Lsi02G023150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009542	Microsomal signal peptidase 12kDa subunit	PANTHER	PTHR13202	MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT	coord: 2..96 score: 3.5
IPR009542	Microsomal signal peptidase 12kDa subunit	PFAM	PF06645	SPC12	coord: 4..72 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G023150	Cla014738	Watermelon (97103) v1	lsiwmB175
Lsi02G023150	ClCG09G006830	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G023150	Cla97C09G169400	Watermelon (97103) v2	lsiwmbB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G023150	Wax gourd	lsiwgoB282
Lsi02G023150	Cucumber (Gy14) v1	cgylsiB090
Lsi02G023150	Cucumber (Gy14) v1	cgylsiB091
Lsi02G023150	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G023150	Cucurbita maxima (Rimu)	cmalsiB749
Lsi02G023150	Cucurbita maxima (Rimu)	cmalsiB822
Lsi02G023150	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G023150	Cucurbita moschata (Rifu)	cmolsiB742
Lsi02G023150	Cucurbita moschata (Rifu)	cmolsiB809
Lsi02G023150	Cucurbita pepo (Zucchini)	cpelsiB498
Lsi02G023150	Cucurbita pepo (Zucchini)	cpelsiB113
Lsi02G023150	Cucurbita pepo (Zucchini)	cpelsiB262
Lsi02G023150	Cucurbita pepo (Zucchini)	cpelsiB704
Lsi02G023150	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G023150	Wild cucumber (PI 183967)	cpilsiB523
Lsi02G023150	Cucumber (Chinese Long) v2	culsiB503
Lsi02G023150	Cucumber (Chinese Long) v2	culsiB509
Lsi02G023150	Melon (DHL92) v3.5.1	lsimeB186
Lsi02G023150	Melon (DHL92) v3.5.1	lsimeB222
Lsi02G023150	Cucumber (Gy14) v2	cgyblsiB157
Lsi02G023150	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G023150	Cucumber (Gy14) v2	cgyblsiB477
Lsi02G023150	Melon (DHL92) v3.6.1	lsimedB195
Lsi02G023150	Melon (DHL92) v3.6.1	lsimedB232
Lsi02G023150	Silver-seed gourd	carlsiB098
Lsi02G023150	Silver-seed gourd	carlsiB782
Lsi02G023150	Cucumber (Chinese Long) v3	cuclsiB189
Lsi02G023150	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G023150	Cucumber (Chinese Long) v3	cuclsiB543